Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,548 |
1 bp→GG |
intergenic (‑117/‑744) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,547 | 1 | . | G | 93.4%
| 448.7
/ 25.1
| 151 | intergenic (‑116/‑745) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (7/3); new base G (68/73); total (75/76) |
| Fisher's exact test for biased strand distribution p-value = 2.09e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.64e-01 |
| * | NC_000913 | 3,957,548 | 0 | T | G | 100.0%
| 476.5
/ NA
| 151 | intergenic (‑117/‑744) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (75/76); total (75/76) |
Only 100 of 163 total aligned reads displayed.
TTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑T‑G‑‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957469‑3957626
|||
aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑T‑ccc < 1:1707689/93‑2 (MQ=255)
gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑T‑ccct > 2:4653394/1‑91 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑T‑ccctca > 2:3178309/1‑89 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAgg < 2:4503788/93‑1 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAgg < 1:4443476/93‑1 (MQ=255)
ttcGCAGATGCTAACGTAAGTGTCAGTCAGGCAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAggg < 1:3731099/91‑1 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAggg > 2:4453096/1‑93 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGCGCATATATGGCAAAAGCCC‑GGGAAAT‑C‑C‑‑G‑GGCC‑TAGCAGG‑TCCCTCAAggg > 1:761578/1‑93 (MQ=255)
ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAgggg < 2:1534196/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGga > 2:2369905/1‑93 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAgggggg > 1:1666371/1‑91 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACAGATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgag > 1:3295042/1‑93 (MQ=255)
gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgag > 1:2855760/1‑93 (MQ=255)
cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTTCCTATATCGCAAAAGCCCGGGAAAAA‑C‑G‑‑G‑G‑‑CGTCGCAGG‑TCCCTCAAAGGgaga > 1:4587355/1‑93 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgagga > 1:3216590/1‑91 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACCTATATGGCAAAAGCCCGGGAAAAT‑CGG‑‑G‑G‑‑T‑TCGCAGG‑TCCCTCAAGGGGGGaaa > 2:2847323/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaaa > 2:3502267/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaaa > 1:296912/1‑93 (MQ=255)
tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAAc < 1:309468/93‑1 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACt > 1:366775/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGGAC‑CCTCAAGGGGAGAAAACtt > 1:1284556/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt > 2:381637/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt > 1:4197072/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt < 1:1873936/93‑1 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt > 2:2663876/1‑93 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTa < 2:2275360/93‑1 (MQ=255)
tAACGTAATGGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTa < 1:850636/93‑1 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg < 2:1949860/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg < 1:2895069/93‑1 (MQ=255)
cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAggg > 2:4257265/1‑93 (MQ=255)
tAATTGTCNGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 2:3986503/93‑1 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CGGG‑G‑‑T‑TCGCAGG‑TCCCCCAAGGGGAGAAAACTTAggggc > 2:2508064/1‑91 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 1:2078765/93‑1 (MQ=255)
atggtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 2:677083/90‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 2:3892165/93‑1 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 1:1020261/93‑1 (MQ=255)
ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctct > 2:3941193/1‑93 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:4150698/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:3208865/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:1273965/93‑1 (MQ=255)
gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt < 1:3544901/93‑1 (MQ=255)
gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:130383/93‑1 (MQ=255)
gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt > 1:4657640/1‑93 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGGCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCCATg > 2:1630245/1‑93 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg < 1:538367/93‑1 (MQ=255)
catacagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAC‑C‑C‑‑G‑GGTT‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 2:4000893/89‑1 (MQ=255)
gtcagGGAGTGGCTGGTACGTATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 2:480700/93‑1 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 2:2999988/93‑1 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAATCC‑C‑‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGGAAACTTAGGGCCTCTATGGGCt > 2:2409313/1‑93 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt < 1:1350816/93‑1 (MQ=255)
cagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:409295/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc < 1:3931279/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:3007812/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGAAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 2:1212677/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:1766907/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:241424/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 1:1499344/1‑93 (MQ=255)
gAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:3307295/93‑1 (MQ=255)
gAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 1:36160/93‑1 (MQ=255)
aGTGGCTTGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg < 2:1418735/93‑1 (MQ=255)
gTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 2:4116896/93‑1 (MQ=255)
gTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt > 2:956580/1‑93 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 1:2242147/1‑93 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 1:98210/1‑93 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 2:3399515/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa > 2:3068860/1‑93 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:1675130/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:2609307/93‑1 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa > 2:4242645/1‑93 (MQ=255)
ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:395835/93‑1 (MQ=255)
gCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt > 2:4421348/1‑93 (MQ=255)
tGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 2:1197357/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:705295/93‑1 (MQ=255)
gTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc > 1:3286258/1‑93 (MQ=255)
aCATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg > 2:3427336/1‑93 (MQ=255)
aCATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 1:1031198/93‑1 (MQ=255)
aCATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg > 2:180963/1‑93 (MQ=255)
cATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 2:1485055/1‑93 (MQ=255)
cATATATGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:3476472/93‑1 (MQ=255)
atatatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 2:375972/93‑1 (MQ=255)
atatatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 1:4603493/1‑93 (MQ=255)
atatatGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 1:476473/1‑93 (MQ=255)
atatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:265810/93‑1 (MQ=255)
tatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 1:1297822/1‑93 (MQ=255)
tatGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 2:510672/1‑93 (MQ=255)
atGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg > 2:36648/1‑93 (MQ=255)
tGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:3827508/1‑93 (MQ=255)
tGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:3797286/1‑93 (MQ=255)
tGGCAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:3142560/1‑93 (MQ=255)
cAAAAGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 1:4016532/1‑93 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGCTGGttatt > 1:2239000/1‑93 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:4373075/1‑93 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:3342342/1‑93 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt < 1:1949039/93‑1 (MQ=255)
aaaaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 2:3647666/1‑93 (MQ=255)
aaGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt > 1:1421316/1‑93 (MQ=255)
aGCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:1014414/93‑1 (MQ=255)
gCCC‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 1:4028533/1‑93 (MQ=255)
ccc‑GGAAAAT‑C‑CG‑G‑G‑‑CGTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:3258482/93‑1 (MQ=255)
cc‑GGAAAAT‑C‑CG‑G‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:3605119/1‑93 (MQ=255)
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TTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑C‑C‑‑T‑G‑‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957469‑3957626
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
