Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,980,297 |
(C)8→9 |
noncoding (79/87 nt) |
leuT → |
tRNA‑Leu |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,980,289 | 1 | . | C | 89.1%
| 429.8
/ 49.0
| 156 | noncoding (71/87 nt) | leuT | tRNA‑Leu |
| Reads supporting (aligned to +/- strand): ref base . (4/13); new base C (42/97); total (46/110) |
| Fisher's exact test for biased strand distribution p-value = 7.79e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 202 total aligned reads displayed.
CATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > NC_000913/3980197‑3980376
|
cATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑t < 2:4393461/93‑1 (MQ=255)
cATTATTAAAAGTTGTGACAATACGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑t < 2:2882033/93‑1 (MQ=255)
attattAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c > 1:1134376/1‑93 (MQ=255)
attattAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c > 1:3640039/1‑93 (MQ=255)
ttattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGGTCAAG‑T‑‑c‑c > 2:4306035/1‑93 (MQ=255)
tattaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c‑cc > 2:3054562/1‑93 (MQ=255)
ttaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c‑ccc‑c > 2:2052006/1‑93 (MQ=255)
ttaGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c‑ccc‑c > 1:2215973/1‑93 (MQ=255)
aGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c‑ccc‑ccc > 2:1040558/1‑93 (MQ=255)
gAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGGTCAAG‑C‑‑c‑ccc‑cccc > 2:3663035/1‑93 (MQ=255)
aaGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c‑gcc‑ccccc > 1:188325/1‑92 (MQ=255)
aaGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c‑ccc‑ccccc < 1:633616/93‑2 (MQ=255)
aGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAA‑T‑‑c‑ccc‑ccccct > 1:3391415/1‑91 (MQ=255)
gTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c‑ccc‑ccccctc > 1:4158779/1‑90 (MQ=255)
gTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGGTTCAG‑T‑‑c‑gcc‑ccccccc > 2:866720/1‑90 (MQ=14)
attGTGACAATGCGAAGGTGCCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑c‑ccc‑ccccctc < 1:3920314/92‑4 (MQ=255)
cAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCCcaccac > 2:1849711/1‑93 (MQ=255)
cAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGGTCAAG‑TC‑C‑CCC‑CCCCTCGcaccac > 1:4023163/1‑93 (MQ=255)
aTGCGAAGGTGGCGGAATTGGTAGACGCTCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGa < 1:442183/93‑1 (MQ=255)
aTGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCCCACCACgc > 1:1542513/1‑92 (MQ=11)
tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGAc < 1:1585515/93‑1 (MQ=255)
tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGAc < 2:3412818/93‑1 (MQ=255)
tGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGAc < 2:1783512/93‑1 (MQ=255)
aaGGTGGCGGAATGGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTa < 2:4043615/93‑1 (MQ=255)
aGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTaa > 2:3618974/1‑93 (MQ=255)
ggcggCGGAATGGGTAGGCGCGCCAGGTTCCGGTGTTTGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTaaa < 2:78021/90‑1 (MQ=14)
ggTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTaaa < 2:4270468/93‑1 (MQ=255)
ggTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTaaa < 1:2155763/93‑1 (MQ=255)
ggTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTaaa < 2:2557725/93‑1 (MQ=255)
ggTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTaaa < 1:4199348/93‑1 (MQ=255)
ggCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑aa < 1:4114913/93‑1 (MQ=255)
gCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AAt > 2:3520810/1‑93 (MQ=255)
cGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AAtt < 1:224311/93‑1 (MQ=255)
cGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AAtt < 1:3663882/93‑1 (MQ=255)
cGGAATTGGTAGACGCGCTAGCTTCAGGAGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AAtt < 1:4510495/93‑1 (MQ=255)
gAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGa < 2:621531/93‑1 (MQ=255)
aaTTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGaa > 2:3853407/1‑93 (MQ=255)
aaTTGGTAGACGCGCTAGCTTCAGGCGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAGTT‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTCaa > 1:4398586/1‑93 (MQ=17)
aTTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAAc > 2:2737507/1‑93 (MQ=255)
ttGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACt < 2:2592402/93‑1 (MQ=255)
tGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTa < 1:2890702/93‑1 (MQ=255)
tgTAGACGCGCTAGCTTCATGTGTTAGTGTCC‑TGACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTaa < 1:510797/92‑1 (MQ=18)
ggTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTaa < 1:2788687/93‑1 (MQ=255)
ggTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTaa < 2:3940360/93‑1 (MQ=255)
tAGACGCGCTAGTTTCAGGTGTTAGTGTCC‑TTATGGAAGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTaaaa < 1:709464/93‑1 (MQ=18)
tAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TCCC‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTaaa < 1:2364274/93‑1 (MQ=18)
aCGCGCTTGGCTCCGGTGTTTGTGGCCTTTCCGGCCGTGGGGTTCCAGGCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAAt < 1:1616677/93‑1 (MQ=255)
gcTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCaaa > 2:711837/1‑93 (MQ=255)
cTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAGCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCaaaa < 2:3487762/93‑1 (MQ=255)
cTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCaaaa > 2:3771187/1‑93 (MQ=255)
cTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCaaaa < 2:647225/93‑1 (MQ=255)
tAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGCATTTAAAG‑AATTGAACTAAAAATTCaaaaa > 1:1938878/1‑93 (MQ=18)
tAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCaaaaa < 1:618812/93‑1 (MQ=255)
tAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCaaaaa < 2:3448405/93‑1 (MQ=255)
tAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCaaaaa < 2:3703904/93‑1 (MQ=255)
tAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCaaaaa < 2:2141392/93‑1 (MQ=255)
tAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGGTCAAGAC‑‑C‑CCC‑CCCCTCGCCCCACGACCTTAAAA‑AAATGAAAGAAAAAATaaaaaa > 2:1190695/1‑93 (MQ=9)
gCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGc < 2:2623251/93‑1 (MQ=255)
gCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGc < 1:1749733/93‑1 (MQ=255)
cTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCa < 1:2740465/93‑1 (MQ=255)
cTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCa < 1:1006900/93‑1 (MQ=255)
ttCAGGTGTTAGTGTAC‑TTACGGACGTGGGGGTTCAAGTT‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAg > 2:1579911/1‑93 (MQ=255)
tCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGt < 1:1992194/93‑1 (MQ=255)
tCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGt > 2:2874284/1‑93 (MQ=255)
tCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCCCACCACGACCTTAAAGAAATTAAACAAAAAATTaaaaaacagt > 2:3355572/1‑89 (MQ=17)
cAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTa < 2:4176875/93‑1 (MQ=255)
cAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTa < 1:2949359/93‑1 (MQ=255)
cAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTa < 1:4633058/93‑1 (MQ=255)
aGGTGTTAGTGTCC‑TTACTGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTAt < 2:243608/93‑1 (MQ=255)
ggTGTTAGTTTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTAtt < 2:3289878/93‑1 (MQ=255)
ggTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTAtt > 1:4335298/1‑93 (MQ=255)
ggTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTAtt < 1:837898/93‑1 (MQ=255)
gtgtTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTAttt < 2:250238/93‑1 (MQ=255)
gtgtTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCCCGCACCCCGACTTTAAAA‑AATTGAACTAAAAATTCAAAAAACAGTAttt > 2:4099013/1‑93 (MQ=21)
tgtTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTc < 1:3188882/93‑1 (MQ=255)
tgtTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTc < 2:2028932/93‑1 (MQ=255)
tgtTAGGGTCC‑TTACGGACGTGGGGGTTCAAGCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTc < 2:4451718/93‑1 (MQ=37)
gtTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCg < 1:3493806/93‑1 (MQ=255)
ttAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCgg > 1:2101058/1‑93 (MQ=255)
tCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTa < 2:2226140/93‑1 (MQ=255)
tCC‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTa > 2:1265822/1‑93 (MQ=255)
c‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgc < 2:4241163/93‑1 (MQ=255)
c‑TTACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgc < 2:496947/93‑1 (MQ=255)
tACGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAgcgc > 1:4542933/1‑93 (MQ=255)
cGGACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAg < 2:1521722/93‑1 (MQ=255)
ggACGTAGGGGTAAAAG‑T‑‑C‑CCCTCCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGc < 1:2167368/93‑1 (MQ=255)
ggACGGGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGc < 1:349720/93‑1 (MQ=255)
gACGTGGGGGTTCAAGCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCt < 1:2471170/93‑1 (MQ=255)
gACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCt > 2:1999677/1‑93 (MQ=255)
gACGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCt > 2:2313599/1‑93 (MQ=255)
gACGTGGGGAGTCAAG‑C‑‑CACCC‑CCCCTCGCACCACGACTATAAAG‑AATTGAACTAAAAATTCAAAAAGCACTATTTCGGCGAGTAGCGCAGCt < 2:1974481/93‑1 (MQ=255)
aCGTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCtt > 1:4663774/1‑93 (MQ=255)
gTGGGGGTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTgg < 1:3042561/93‑1 (MQ=255)
gggTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAgc < 2:270553/93‑1 (MQ=255)
gTTCAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAgcgc < 2:1736983/93‑1 (MQ=255)
ttCAAG‑T‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCaa > 2:3167783/1‑93 (MQ=255)
ttCAAG‑T‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGGAGCGCaa > 1:4265354/1‑93 (MQ=255)
cAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAc < 2:1460657/93‑1 (MQ=255)
cAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAc < 1:2987813/93‑1 (MQ=255)
cAAG‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAc < 1:2592241/93‑1 (MQ=255)
|
CATTATTAGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCC‑TTACGGACGTGGGGGTTCAAG‑T‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG‑AATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > NC_000913/3980197‑3980376
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG > NC_000913/3980204‑3980390
|
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑T‑‑C‑CCC‑CCCC > SRR4302535.3636284/1‑94 (MQ=33)
GAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑‑CGCCC‑CCCC > SRR4302535.189628/1‑94 (MQ=30)
AAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑‑C‑CCC‑CCCCct < SRR4302535.638032/94‑3 (MQ=29)
AAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑A‑T‑‑C‑CCC‑CCCCct > SRR4302535.3415009/1‑92 (MQ=28)
AGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑‑C‑CCC‑CCCCctc > SRR4302535.4187244/1‑91 (MQ=27)
ATTGTGACAATGCGAAGGTGCCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCG < SRR4302535.3947121/94‑1 (MQ=19)
TTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑‑C‑CCC‑CCCCctcct < SRR4302535.4533465/94‑6 (MQ=22)
GTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCAC < SRR4302535.4170457/94‑1 (MQ=10)
ACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCAC > SRR4302535.4050686/1‑94 (MQ=4)
AATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑‑C‑CCC‑CCCCctcccaccacgc > SRR4302535.1553632/1‑82 (MQ=0)
ATGCGAAGGTGGCGGAATTGGTAGACGCTCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGAC < SRR4302535.445279/94‑1 (MQ=4)
TGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACT < SRR4302535.1596955/94‑1 (MQ=7)
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTT < SRR4302535.522229/94‑1 (MQ=10)
CGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTGCGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTT < SRR4302535.1187411/94‑1 (MQ=11)
GAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTA > SRR4302535.1576182/1‑94 (MQ=20)
AAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAA < SRR4302535.4685517/94‑1 (MQ=22)
AAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAA > SRR4302535.4628107/1‑94 (MQ=22)
AAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAA > SRR4302535.2375120/1‑94 (MQ=21)
AGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAA < SRR4302535.296191/94‑1 (MQ=25)
GGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG < SRR4302535.4228085/94‑1 (MQ=27)
GGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG < SRR4302535.2171254/94‑1 (MQ=27)
GGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG < SRR4302535.789514/94‑1 (MQ=27)
GGGGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAAGG‑C‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAG < SRR4302535.3014424/94‑1 (MQ=25)
TGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAA < SRR4302535.3394208/94‑1 (MQ=32)
GGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAAT < SRR4302535.4143080/94‑1 (MQ=34)
GGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAAT > SRR4302535.625766/1‑94 (MQ=34)
GGGAATTGGTAGACGCGCTAGCTGCAGGGGTTAGTGTCGTTACGGACGTGGGGGTTCAA‑GCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTG < SRR4302535.4303936/94‑1 (MQ=33)
CGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTG < SRR4302535.225857/94‑1 (MQ=39)
CGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTG < SRR4302535.2905109/94‑1 (MQ=39)
CGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTG < SRR4302535.3689246/94‑1 (MQ=39)
CGGAATTGGTAGACGCGCTAGCTTCAGGAGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTG < SRR4302535.4541437/94‑1 (MQ=38)
GGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑GCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGA < SRR4302535.3151395/94‑1 (MQ=40)
GGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGA < SRR4302535.2160670/94‑1 (MQ=42)
GAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAA > SRR4302535.4551608/1‑94 (MQ=44)
GAATTGGTAGACGCGCTAGCTTCAGGCGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑GTT‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTCAA > SRR4302535.4428692/1‑94 (MQ=34)
ATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACT > SRR4302535.1924681/1‑94 (MQ=49)
ATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACA > SRR4302535.1599963/1‑94 (MQ=46)
TGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAA < SRR4302535.2911153/94‑1 (MQ=54)
TGTAGACGCGCTAGCTTCATGTGTTAGTGTCCTGACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAA < SRR4302535.514369/94‑1 (MQ=51)
GGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAA < SRR4302535.1882817/94‑1 (MQ=56)
GGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAA < SRR4302535.2808532/94‑1 (MQ=56)
GGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAA < SRR4302535.199160/94‑1 (MQ=56)
GGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAA < SRR4302535.1722708/94‑1 (MQ=56)
GTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑GCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAA < SRR4302535.4277253/94‑1 (MQ=56)
TAGACGCGCTAGTTTCAGGTGTTAGTGTCCTTATGGAAGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAA < SRR4302535.714443/94‑1 (MQ=54)
TAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TCCC‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAA < SRR4302535.2381250/94‑1 (MQ=58)
AGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAAT < SRR4302535.2782749/94‑1 (MQ=60)
GACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATT < SRR4302535.4349483/94‑1 (MQ=60)
CGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCA < SRR4302535.3665668/94‑1 (MQ=60)
acgcgcttggctccggtgtttgtggcctttccggccgtggggttccaggccC‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATT < SRR4302535.1628326/43‑1 (MQ=60)
GCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAGG‑T‑‑C‑CCC‑CCCCcgccccccacattttttttttcttttttttttttttct > SRR4302535.826381/1‑56 (MQ=0)
CGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAA > SRR4302535.4439986/1‑94 (MQ=60)
CTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGCATTTAAAGAATTGAACTAAAAATTCAAAAA > SRR4302535.1952839/1‑94 (MQ=52)
CTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAA > SRR4302535.2224943/1‑94 (MQ=60)
TAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAG < SRR4302535.623112/94‑1 (MQ=60)
GCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCA < SRR4302535.1762389/94‑1 (MQ=60)
GCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCA < SRR4302535.341557/94‑1 (MQ=60)
CTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAG < SRR4302535.2759999/94‑1 (MQ=60)
CTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAG < SRR4302535.225113/94‑1 (MQ=60)
CTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAG < SRR4302535.1014057/94‑1 (MQ=60)
CTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGGTCAAGG‑C‑‑C‑CCC‑CCCCTCCCCCCACGAGTTTTAAGAAATGAACTAAAAAATCAAAAAGAAG > SRR4302535.2562229/1‑94 (MQ=3)
TCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTA < SRR4302535.2006537/94‑1 (MQ=60)
CAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAT < SRR4302535.1533269/94‑1 (MQ=60)
CAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAT < SRR4302535.2970078/94‑1 (MQ=60)
CAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTAT < SRR4302535.4664490/94‑1 (MQ=60)
AGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATT > SRR4302535.4364950/1‑94 (MQ=60)
AGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATT < SRR4302535.4418314/94‑1 (MQ=60)
GGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTT < SRR4302535.843781/94‑1 (MQ=60)
TGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCG < SRR4302535.4097828/94‑1 (MQ=60)
TGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCG < SRR4302535.3210933/94‑1 (MQ=60)
GTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGG > SRR4302535.2116209/1‑94 (MQ=60)
GTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGG < SRR4302535.3518084/94‑1 (MQ=60)
TGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑‑C‑CCC‑CCCCctccccccccggattttaagaatttaacataaaaatcaaaaaacaggttttcggggacg > SRR4302535.1207365/1‑35 (MQ=0)
GTCCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTA > SRR4302535.659058/1‑94 (MQ=60)
CCTTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGC > SRR4302535.2174823/1‑94 (MQ=60)
TTACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGC > SRR4302535.4574004/1‑94 (MQ=60)
ACGGACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAG < SRR4302535.2604304/94‑1 (MQ=60)
GGACGTAGGGGTAAAA‑G‑T‑‑C‑CCCTCCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCT < SRR4302535.2182902/94‑1 (MQ=60)
GGACGGGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCT < SRR4302535.352128/94‑1 (MQ=60)
GACGTGGGGGTTCAA‑GCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTT < SRR4302535.2488985/94‑1 (MQ=60)
GACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTT < SRR4302535.2055448/94‑1 (MQ=60)
GACGTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTT > SRR4302535.4695308/1‑94 (MQ=60)
GTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGT < SRR4302535.3063880/94‑1 (MQ=60)
GTGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGT > SRR4302535.2971111/1‑94 (MQ=60)
GTGGGGGTGCAA‑G‑TC‑C‑CCC‑CCCCTCGCTCCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGT < SRR4302535.2384164/94‑1 (MQ=60)
TGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTA < SRR4302535.4018428/94‑1 (MQ=60)
TGGGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTA < SRR4302535.2691533/94‑1 (MQ=60)
GGGGTTCAA‑GCC‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGC < SRR4302535.482352/94‑1 (MQ=60)
GGGGTTCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGC < SRR4302535.3518901/94‑1 (MQ=60)
GTTCAA‑G‑T‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGGAGCGCAA > SRR4302535.4294563/1‑94 (MQ=60)
TCAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAAC > SRR4302535.4218515/1‑94 (MQ=60)
CAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTTGGCGAGTAGCGCAGCCTGGTAGCGCAACT > SRR4302535.4164500/1‑94 (MQ=60)
CAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACT < SRR4302535.3008765/94‑1 (MQ=60)
CAA‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACT < SRR4302535.2610862/94‑1 (MQ=60)
A‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGG < SRR4302535.3389630/94‑1 (MQ=60)
A‑G‑TC‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAACAGTATTTCGGCGAGTAGCGCAGCTTGGGAGCGCAACTGG > SRR4302535.3303347/1‑94 (MQ=60)
gtcC‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGT > SRR4302535.3605235/4‑94 (MQ=60)
C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTG < SRR4302535.1646810/94‑1 (MQ=60)
CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGG < SRR4302535.3481988/94‑1 (MQ=60)
CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGG > SRR4302535.836655/1‑94 (MQ=60)
CC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGG > SRR4302535.2370794/1‑94 (MQ=60)
C‑CCCCTCGCACCACGCCTTTAAAGAATTGAACTAAAAATTAAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGAA > SRR4302535.3622431/1‑94 (MQ=60)
C‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGTGA > SRR4302535.4436407/1‑94 (MQ=60)
C‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGA > SRR4302535.3622432/1‑94 (MQ=60)
CCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACC > SRR4302535.611118/1‑94 (MQ=60)
CCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCA > SRR4302535.1411629/1‑94 (MQ=60)
CCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCA > SRR4302535.581485/1‑94 (MQ=60)
CCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCA > SRR4302535.3938457/1‑94 (MQ=60)
CTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG < SRR4302535.280619/94‑1 (MQ=60)
|
AGAAGTTGTGACAATGCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTGGGGGTTCAA‑G‑T‑‑C‑CCC‑CCCCTCGCACCACGACTTTAAAGAATTGAACTAAAAATTCAAAAAGCAGTATTTCGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAG > NC_000913/3980204‑3980390
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
