Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,987,935 |
G→A |
R156C (CGC→TGC) |
hemC ← |
porphobilinogen deaminase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,987,935 | 0 | G | A | 99.6%
| 825.0
/ ‑5.7
| 230 | R156C (CGC→TGC) | hemC | porphobilinogen deaminase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (116/113); total (117/113) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
Only 100 of 247 total aligned reads displayed.
GACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCGCAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGT > NC_000913/3987845‑3988023
|
gACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGcaca > 1:1317882/1‑93 (MQ=255)
gACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGcaca > 2:3053119/1‑93 (MQ=255)
gACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGcaca > 1:94322/1‑93 (MQ=255)
aCCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAg < 1:994715/93‑1 (MQ=255)
ccTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAgg > 2:3295561/1‑93 (MQ=255)
ccTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAgg > 1:1490565/1‑93 (MQ=255)
cTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAggg > 2:3171635/1‑93 (MQ=255)
cTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAggg < 1:4111444/93‑1 (MQ=255)
aaCGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGc > 1:1574036/1‑93 (MQ=255)
aaCGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGc < 1:397714/93‑1 (MQ=255)
gTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGa > 2:206132/1‑93 (MQ=255)
ttttAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGAt > 1:2644512/1‑93 (MQ=255)
ttttAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGAt > 1:649428/1‑93 (MQ=255)
ttttAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGAt > 1:1592189/1‑93 (MQ=255)
ttAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATaa < 2:2191909/93‑1 (MQ=255)
ttAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATaa > 1:2821332/1‑93 (MQ=255)
ttAGTCCGGCTACGGAAAGAATGATGGCTCCGTATTCTCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTTCCGCACAGGGAGCGGATaa < 2:1265361/93‑1 (MQ=255)
gTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCa < 2:1315385/93‑1 (MQ=255)
gTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCa > 2:3124675/1‑93 (MQ=255)
ccGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGa < 1:1846716/93‑1 (MQ=255)
cGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGAt > 2:600709/1‑93 (MQ=255)
gCTACAGCACGAATGAAGGCATCGTATGAGGCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGACGCCGCACAGGGAGCGGATAATCAGAttt > 2:1520101/1‑91 (MQ=255)
cgtcAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGAc < 1:3907350/90‑1 (MQ=255)
cAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCAGGACGGc > 2:4144307/1‑93 (MQ=255)
aaGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGTCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCg > 1:781066/1‑93 (MQ=255)
aGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGt < 1:1896487/93‑1 (MQ=255)
aaTGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTc < 2:2534848/93‑1 (MQ=255)
atgatgGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCa > 2:48744/1‑93 (MQ=255)
atgatgGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCa > 1:2788660/1‑93 (MQ=255)
atgatgGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGCAGCGGATAATCAGATCCGGACGGCGTTCa > 1:2737795/1‑93 (MQ=255)
tgatgGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAg > 1:753396/1‑93 (MQ=255)
gatgGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGc < 2:2286245/93‑1 (MQ=255)
atgGCATCTTATTCTCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGcc < 1:4441831/93‑1 (MQ=255)
tgGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCa < 2:701974/93‑1 (MQ=255)
tgGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCa < 1:102369/93‑1 (MQ=255)
tgGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCa < 2:1877212/93‑1 (MQ=255)
ggCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAg < 1:520199/93‑1 (MQ=255)
ggCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAg > 1:2325921/1‑93 (MQ=255)
gCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGt < 1:2278795/93‑1 (MQ=255)
gCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGt < 1:3657324/93‑1 (MQ=255)
cATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGtt > 1:827259/1‑93 (MQ=255)
aTCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTg < 2:2647546/93‑1 (MQ=255)
aTCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTg > 1:3042205/1‑93 (MQ=255)
aTCGTATTAGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTg > 2:4554773/1‑93 (MQ=255)
gTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCa > 2:1164176/1‑93 (MQ=255)
tATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCAc > 1:4147365/1‑93 (MQ=255)
tCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTgg < 1:401209/93‑1 (MQ=255)
cGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGc < 2:2590404/93‑1 (MQ=255)
gCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCg > 2:3801074/1‑93 (MQ=255)
gCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCg > 2:2452365/1‑93 (MQ=255)
ccGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGa < 1:905858/93‑1 (MQ=255)
ccGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGa > 1:1467920/1‑93 (MQ=255)
ccGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGa < 2:1587865/93‑1 (MQ=255)
ttATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGt > 2:428090/1‑93 (MQ=255)
ttATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGt < 2:229037/93‑1 (MQ=255)
tATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTa > 2:4420663/1‑93 (MQ=255)
aTCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTaa > 1:2182773/1‑93 (MQ=255)
tCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTaaa > 1:199122/1‑93 (MQ=255)
tCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTaaa > 1:4210807/1‑93 (MQ=255)
tCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTaaa < 2:3421832/93‑1 (MQ=255)
tCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGGTCAGCCAGTTGGTACGGGCGACGTgaa > 2:1366482/1‑93 (MQ=255)
ccAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAAc < 1:583295/93‑1 (MQ=255)
ccAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAAc < 2:79164/93‑1 (MQ=255)
ccAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAAc < 1:3418672/93‑1 (MQ=255)
cAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACt < 1:2599289/93‑1 (MQ=255)
cAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACt < 2:535816/93‑1 (MQ=255)
cAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACt < 1:391932/93‑1 (MQ=255)
gTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTgg < 2:2334092/93‑1 (MQ=255)
tttGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGa < 2:2925281/93‑1 (MQ=255)
tttGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGa < 2:1665371/93‑1 (MQ=255)
gCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGt > 2:3702850/1‑93 (MQ=255)
cTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTc < 2:4369936/93‑1 (MQ=255)
tCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTcc > 1:1664174/1‑93 (MQ=255)
tCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTcc < 1:433653/93‑1 (MQ=255)
cAGCCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTccc < 2:868050/93‑1 (MQ=255)
ggCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCcga > 1:3178690/1‑93 (MQ=255)
ggCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTCCAGCCAGTTGGCACTGGCGACGTAAACTGGCGCTCCcga > 1:1188833/1‑93 (MQ=255)
aGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCCGCCAGTTGGCACTGGCGCAGTAAACTGGACGTCCCGAAGAt > 2:1226187/1‑93 (MQ=255)
gTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATa < 1:4603985/93‑1 (MQ=255)
gTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATa < 2:2079195/93‑1 (MQ=255)
tGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATAc < 2:584302/93‑1 (MQ=255)
tGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATAc < 2:3566438/93‑1 (MQ=255)
tGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATAc < 1:4494088/93‑1 (MQ=255)
tGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATAc < 2:1846310/93‑1 (MQ=255)
gCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATAct > 1:3725963/1‑93 (MQ=255)
ccGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActg > 1:1105186/1‑93 (MQ=255)
cGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgc < 2:3522714/93‑1 (MQ=255)
gACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcc < 2:3615735/93‑1 (MQ=255)
aCGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcct > 2:3824764/1‑93 (MQ=255)
aCGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcct < 2:2172306/93‑1 (MQ=255)
aCGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcct > 2:3764094/1‑93 (MQ=255)
aCGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcct < 1:1367958/93‑1 (MQ=255)
cGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcctg > 2:3610686/1‑93 (MQ=255)
gTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcctgc > 1:3292637/1‑93 (MQ=255)
gTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcctgc > 1:1825711/1‑93 (MQ=255)
gTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATActgcctgc < 2:742307/93‑1 (MQ=255)
ttGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACtgcctgcc < 2:1967635/93‑1 (MQ=255)
ttGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACtgcctgcc > 2:1030644/1‑93 (MQ=255)
gCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCgg > 2:2849335/1‑93 (MQ=255)
gCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCgg > 2:2898493/1‑93 (MQ=255)
|
GACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCGCAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGT > NC_000913/3987845‑3988023
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCGCAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAACGC > NC_000913/3987842‑3988028
|
CCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATTATGGCATCGTATTCGCCGTTATCCAGTCTGCTCAGGCGAGTGCCGAGGTTGCCGCA > SRR4302535.863367/1‑94 (MQ=60)
CCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCA > SRR4302535.3322311/1‑94 (MQ=60)
AGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACA > SRR4302535.94995/1‑94 (MQ=60)
AGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACA < SRR4302535.3223839/94‑1 (MQ=60)
AGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACA < SRR4302535.2584476/94‑1 (MQ=60)
AGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACA > SRR4302535.4218390/1‑94 (MQ=60)
AGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACA > SRR4302535.1327296/1‑94 (MQ=60)
GACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAG < SRR4302535.64709/94‑1 (MQ=60)
ACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCTCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGG < SRR4302535.1740020/94‑1 (MQ=60)
ACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGG > SRR4302535.1501268/1‑94 (MQ=60)
ACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGG < SRR4302535.1001779/94‑1 (MQ=60)
ACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGG > SRR4302535.2663096/1‑94 (MQ=60)
ACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGG > SRR4302535.683736/1‑94 (MQ=60)
CCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGG > SRR4302535.2739379/1‑94 (MQ=60)
CCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGG < SRR4302535.424918/94‑1 (MQ=60)
CCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGG < SRR4302535.927771/94‑1 (MQ=60)
CTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCNTCGTATTCGCCGTNATCCAGTTTGCNCAGGCGAGTGNCGACGNTNCCNCNCNGNGA > SRR4302535.382509/1‑94 (MQ=60)
CTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGA < SRR4302535.4139586/94‑1 (MQ=60)
CTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGA > SRR4302535.1005124/1‑94 (MQ=60)
TAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAG > SRR4302535.1495436/1‑94 (MQ=60)
AAACGTTTTAGTCCGGCTACGGTAAGAATGATGGCATCTTATTCGACGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGC < SRR4302535.2772448/94‑1 (MQ=60)
AAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGG > SRR4302535.3980031/1‑94 (MQ=60)
AAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGC > SRR4302535.3797072/1‑94 (MQ=60)
AAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGC > SRR4302535.1585400/1‑94 (MQ=60)
AAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGC > SRR4302535.643741/1‑94 (MQ=60)
AAACGTTTTAGTCCGGCGACGTCAAGAATGATGGCATCGTATTCGTCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGC < SRR4302535.3127623/94‑1 (MQ=60)
AACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCG < SRR4302535.400501/94‑1 (MQ=60)
CGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGA > SRR4302535.2477820/1‑94 (MQ=60)
CGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGA > SRR4302535.1989229/1‑94 (MQ=60)
GTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGAT > SRR4302535.1603677/1‑94 (MQ=60)
GTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGAT > SRR4302535.2663452/1‑94 (MQ=60)
GTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGAT > SRR4302535.653956/1‑94 (MQ=60)
GTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGAT > SRR4302535.2313267/1‑94 (MQ=60)
GTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGAT > SRR4302535.2072508/1‑94 (MQ=60)
TTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATA > SRR4302535.1586336/1‑94 (MQ=60)
TTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAA > SRR4302535.2841368/1‑94 (MQ=60)
GTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAG > SRR4302535.905863/1‑94 (MQ=60)
CCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGAT < SRR4302535.1860025/94‑1 (MQ=60)
GGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCC > SRR4302535.1843118/1‑94 (MQ=60)
GGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCC > SRR4302535.774073/1‑94 (MQ=60)
ACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGAC < SRR4302535.1521816/94‑1 (MQ=60)
CGTCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACG < SRR4302535.3934119/94‑1 (MQ=60)
CGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACG < SRR4302535.816191/94‑1 (MQ=60)
GGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGG > SRR4302535.3282213/1‑94 (MQ=60)
GTAAGAATGATGGCATCGTATTCTCCGTTATCCAGTTTGCTCAGTCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGC < SRR4302535.880681/94‑1 (MQ=60)
CAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGTCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCG > SRR4302535.786549/1‑94 (MQ=60)
AAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGT > SRR4302535.1320971/1‑94 (MQ=60)
AGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTT < SRR4302535.1910132/94‑1 (MQ=60)
AGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTT > SRR4302535.4255602/1‑94 (MQ=60)
AATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCA < SRR4302535.4667325/94‑1 (MQ=60)
AATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCA > SRR4302535.2808505/1‑94 (MQ=60)
AATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGCAGCGGATAATCAGATCCGGACGGCGTTCA > SRR4302535.2757323/1‑94 (MQ=60)
ATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAG > SRR4302535.758700/1‑94 (MQ=60)
ATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAG > SRR4302535.1901115/1‑94 (MQ=60)
GATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCC < SRR4302535.1975911/94‑1 (MQ=60)
GATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCC > SRR4302535.2812776/1‑94 (MQ=60)
ATGGCATCTTATTCTCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCA < SRR4302535.4472289/94‑1 (MQ=60)
ATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCA > SRR4302535.50946/1‑94 (MQ=60)
TGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAG > SRR4302535.2342563/1‑94 (MQ=60)
TGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAG < SRR4302535.103091/94‑1 (MQ=60)
GGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGT < SRR4302535.523836/94‑1 (MQ=60)
GCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTT < SRR4302535.2295071/94‑1 (MQ=60)
GCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTT > SRR4302535.833050/1‑94 (MQ=60)
GCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTT < SRR4302535.3256298/94‑1 (MQ=60)
GCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTT < SRR4302535.3682640/94‑1 (MQ=60)
CATCGTATTCTCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTG < SRR4302535.1565328/94‑1 (MQ=60)
CATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTG > SRR4302535.3063521/1‑94 (MQ=60)
ATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCGCAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGG > SRR4302535.346722/1‑94 (MQ=60)
ATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGG < SRR4302535.2959586/94‑1 (MQ=60)
GTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCAC > SRR4302535.98866/1‑94 (MQ=60)
GTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCAC > SRR4302535.3916235/1‑94 (MQ=60)
GTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCAC > SRR4302535.4175764/1‑94 (MQ=60)
TCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGC < SRR4302535.404022/94‑1 (MQ=60)
CGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCG > SRR4302535.3735768/1‑94 (MQ=60)
GCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGA > SRR4302535.1478435/1‑94 (MQ=60)
CCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGTATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGAC < SRR4302535.3323183/94‑1 (MQ=60)
CCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGAC < SRR4302535.912285/94‑1 (MQ=60)
GTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGT > SRR4302535.4373812/1‑94 (MQ=60)
GTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGT > SRR4302535.4164725/1‑94 (MQ=60)
GTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGT < SRR4302535.402157/94‑1 (MQ=60)
TTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTA > SRR4302535.1098884/1‑94 (MQ=60)
TTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTA < SRR4302535.4487951/94‑1 (MQ=60)
TATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAA > SRR4302535.2198336/1‑94 (MQ=60)
ATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAA > SRR4302535.4239626/1‑94 (MQ=60)
ATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAA > SRR4302535.200486/1‑94 (MQ=60)
TCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAAC > SRR4302535.447703/1‑94 (MQ=60)
TCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAAC < SRR4302535.1673134/94‑1 (MQ=60)
TCCACTTTGCTCAGGCGAGCTCCGACGTTGCCCCACAGAGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAAC < SRR4302535.4082691/94‑1 (MQ=60)
CCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACT > SRR4302535.3483879/1‑94 (MQ=60)
CCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACT < SRR4302535.3442452/94‑1 (MQ=60)
CCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACT < SRR4302535.587386/94‑1 (MQ=60)
CCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGACAGTTGGCACTGGCGACGTAAACT > SRR4302535.781917/1‑94 (MQ=60)
CAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTG < SRR4302535.394666/94‑1 (MQ=60)
CAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTG < SRR4302535.2617950/94‑1 (MQ=60)
CAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTG > SRR4302535.2623038/1‑94 (MQ=60)
AGTTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGG > SRR4302535.2207439/1‑94 (MQ=60)
TTTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGAC < SRR4302535.1477941/94‑1 (MQ=60)
TTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGTACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACG < SRR4302535.4066628/94‑1 (MQ=60)
TTGCTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGCCGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACG < SRR4302535.1140291/94‑1 (MQ=60)
CTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCC > SRR4302535.1676200/1‑94 (MQ=60)
CTCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCC < SRR4302535.530807/94‑1 (MQ=60)
TCAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCC < SRR4302535.436673/94‑1 (MQ=60)
CAGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCG > SRR4302535.2917762/1‑94 (MQ=60)
AGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGA > SRR4302535.1858419/1‑94 (MQ=60)
AGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGA > SRR4302535.3200672/1‑94 (MQ=60)
AGGCGAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTCCAGCCAGTTGGCACTGGCGACGTAAACTGGcgctcccga > SRR4302535.1197347/1‑85 (MQ=60)
GAGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGAT < SRR4302535.3984584/94‑1 (MQ=60)
AGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATA < SRR4302535.4527899/94‑1 (MQ=60)
AGTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATA > SRR4302535.3934170/1‑94 (MQ=60)
GTGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATAC < SRR4302535.4635286/94‑1 (MQ=60)
TGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACT < SRR4302535.4524936/94‑1 (MQ=60)
TGCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACT > SRR4302535.3751777/1‑94 (MQ=60)
GCCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTG > SRR4302535.1113083/1‑94 (MQ=60)
CCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGC > SRR4302535.98652/1‑94 (MQ=60)
CCGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGC < SRR4302535.2769985/94‑1 (MQ=60)
CGACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCC < SRR4302535.1650092/94‑1 (MQ=60)
GACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCT < SRR4302535.1295143/94‑1 (MQ=60)
ACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTG < SRR4302535.1377733/94‑1 (MQ=60)
ACGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTG < SRR4302535.1340928/94‑1 (MQ=60)
CGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGC > SRR4302535.3315530/1‑94 (MQ=60)
CGTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGC > SRR4302535.1838892/1‑94 (MQ=60)
GTTGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCC > SRR4302535.2219926/1‑94 (MQ=60)
TGCCGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGG < SRR4302535.1438121/94‑1 (MQ=60)
CGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAA > SRR4302535.4605479/1‑94 (MQ=60)
CGCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAA > SRR4302535.3051741/1‑94 (MQ=60)
GCACAGGTAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAAC < SRR4302535.1819412/94‑1 (MQ=60)
GCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAACCTGGACGTCCCGACGATACTGCCTGCCGGTAAC < SRR4302535.2760877/94‑1 (MQ=60)
GCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAAC < SRR4302535.1206920/94‑1 (MQ=60)
GCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAAC < SRR4302535.2118526/94‑1 (MQ=60)
GCACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAAC > SRR4302535.3109077/1‑94 (MQ=60)
CACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAACG > SRR4302535.2288012/1‑94 (MQ=60)
ACAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAACGC > SRR4302535.1667112/1‑94 (MQ=60)
|
CCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTTATCCAGTTTGCTCAGGCGAGTGCCGACGTTGCCGCGCAGGGAGCGGATAATCAGATCCGGACGGCGTTCAGCCAGTTGGCACTGGCGACGTAAACTGGACGTCCCGACGATACTGCCTGCCGGTAACGC > NC_000913/3987842‑3988028
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
