Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,998,290 |
+G |
coding (379/486 nt) |
b4566 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,998,289 | 1 | . | G | 99.5%
| 571.5
/ ‑4.1
| 182 | coding (380/486 nt) | b4566 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (84/97); total (85/97) |
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 192 total aligned reads displayed.
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT > NC_000913/3998197‑3998376
|
gACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCa > 2:3962381/1‑93 (MQ=255)
gACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCa < 2:3019748/93‑1 (MQ=255)
aCTGCACCGCAAACTGATTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑g < 1:311260/93‑1 (MQ=255)
aCTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑g < 1:120936/93‑1 (MQ=255)
aCTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑g < 2:3547498/93‑1 (MQ=255)
cTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑gg > 2:2261890/1‑92 (MQ=255)
gCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑ggac < 1:145480/93‑4 (MQ=255)
ccGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGCCTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGa < 2:712814/93‑1 (MQ=255)
cGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGAt < 1:3601633/93‑1 (MQ=255)
cAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATaa < 2:631804/93‑1 (MQ=255)
aaaCTGTATATCTTTACTGGTTTTGAACGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATaaa < 1:2283961/93‑1 (MQ=255)
aaaCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATaaa < 1:4009176/93‑1 (MQ=255)
aaCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAg > 1:3851356/1‑93 (MQ=255)
aaTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAAtt < 1:4090541/93‑1 (MQ=255)
aaTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAAtt > 2:2757600/1‑93 (MQ=255)
aTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGATGGATAAAGAAATTc < 1:2635254/93‑1 (MQ=255)
aTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTc < 2:2197279/93‑1 (MQ=255)
aTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTc > 2:2054102/1‑93 (MQ=255)
aTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTc > 1:4424702/1‑93 (MQ=255)
tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCt > 2:891495/1‑93 (MQ=255)
tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCt < 1:1008998/93‑1 (MQ=255)
tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCt > 1:3685902/1‑93 (MQ=255)
tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCt < 1:3607737/93‑1 (MQ=255)
tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCt > 2:4667870/1‑93 (MQ=255)
tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTGTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCt < 2:2154123/93‑1 (MQ=255)
ctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCtt < 1:318208/93‑1 (MQ=255)
tttACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTc < 2:2575952/93‑1 (MQ=255)
tttACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTc > 2:3496212/1‑93 (MQ=255)
ttACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCa < 1:2964490/93‑1 (MQ=255)
tACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCAc > 2:1812522/1‑93 (MQ=255)
aCTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCAcc < 2:156954/93‑1 (MQ=255)
aCTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCAcc > 1:4341066/1‑93 (MQ=255)
cTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCt > 1:52046/1‑93 (MQ=255)
tGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTg > 1:2980817/1‑93 (MQ=255)
ggTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGa < 2:4383264/93‑1 (MQ=255)
gTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGaa < 2:3378239/93‑1 (MQ=255)
gTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGaa < 1:119494/93‑1 (MQ=255)
ttttGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAg < 2:548797/93‑1 (MQ=255)
ttttGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAg > 2:13988/1‑93 (MQ=255)
ttttGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAg > 1:221343/1‑93 (MQ=255)
gAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCgag > 1:3823759/1‑93 (MQ=255)
aaGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGATGGATAAAGAAATTCCCTTCACCTGAAGCgaga < 2:2096111/93‑1 (MQ=255)
aGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAt < 2:2694147/93‑1 (MQ=255)
aGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAt > 1:3495865/1‑93 (MQ=255)
cATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTa < 1:1422379/93‑1 (MQ=255)
aTCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTaa < 1:1026056/93‑1 (MQ=255)
tCCAGACGAACGATGCCGACTTTATCTCCCGCGTCATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAc > 1:4415150/1‑93 (MQ=255)
tCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAc > 1:2802970/1‑93 (MQ=255)
tCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAc < 2:1496087/93‑1 (MQ=255)
tCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAc > 1:992378/1‑93 (MQ=255)
cAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGc < 1:2417345/93‑1 (MQ=255)
aGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGcc > 1:825826/1‑93 (MQ=255)
gACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCa > 2:3866408/1‑93 (MQ=255)
gACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCa > 2:1582452/1‑93 (MQ=255)
gACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCa > 1:1152396/1‑93 (MQ=255)
gaacgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCt < 1:1908116/93‑1 (MQ=255)
aacgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCtt < 1:2038876/93‑1 (MQ=255)
aacgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCtt < 2:1843474/93‑1 (MQ=255)
aacgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCtt < 1:3201564/93‑1 (MQ=255)
gaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctg > 1:2003583/1‑93 (MQ=255)
aTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgc > 1:1469284/1‑93 (MQ=255)
aTGCCGACTTTAGCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgc < 2:3887901/93‑1 (MQ=255)
gCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgctg < 1:1951284/93‑1 (MQ=255)
ccGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGa < 1:4399938/93‑1 (MQ=255)
cGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAc > 2:3117587/1‑93 (MQ=255)
cGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAc > 2:1668224/1‑93 (MQ=255)
cGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAc > 2:2867970/1‑93 (MQ=255)
gACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAcc > 1:1732328/1‑93 (MQ=255)
cTTTATCTCCCGCGACATAAAACGCGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGt < 2:2362538/93‑1 (MQ=255)
cTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGt > 1:899667/1‑93 (MQ=255)
tttATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtt > 2:2274180/1‑93 (MQ=255)
tttATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtt > 2:4559558/1‑93 (MQ=255)
tttATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtt < 2:3158794/93‑1 (MQ=255)
tttATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtt > 1:3007190/1‑93 (MQ=255)
tATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtttt < 2:2675736/93‑1 (MQ=255)
tATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtttt > 2:4150561/1‑93 (MQ=255)
aTCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTc > 1:4246150/1‑93 (MQ=255)
tctcCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCg > 2:1285853/1‑93 (MQ=255)
ccccGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGAt < 2:4030186/92‑1 (MQ=255)
ccGCGACATAAAACACGCCGCCAGGACGAATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGt < 2:171055/93‑1 (MQ=255)
gcgACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTAc > 2:3200212/1‑93 (MQ=255)
gACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACaa > 1:2381859/1‑93 (MQ=255)
aCATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACaaa < 1:1943488/93‑1 (MQ=255)
aCATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACaaa > 2:1136939/1‑93 (MQ=255)
cATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAc < 2:804655/93‑1 (MQ=255)
aTAAAACACGCCGCCAGGACGGATACAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAcc > 2:2989587/1‑93 (MQ=255)
aTAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAcc > 1:1999539/1‑93 (MQ=255)
aTAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAcc > 1:563266/1‑93 (MQ=255)
tAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCg > 1:4467280/1‑93 (MQ=255)
tAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCg > 2:51409/1‑93 (MQ=255)
aaaaCACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGa < 1:4597255/93‑1 (MQ=255)
aaaCACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAg < 2:2646421/93‑1 (MQ=255)
aaCACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgc < 2:3680760/93‑1 (MQ=255)
acGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcggc > 2:3913892/1‑93 (MQ=255)
cgccgcCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcggcg > 2:3657177/1‑93 (MQ=255)
ccgccAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCa < 2:1401434/93‑1 (MQ=255)
ccgccAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCa < 1:3757821/93‑1 (MQ=255)
ccgccAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCa > 2:3221859/1‑93 (MQ=255)
ccgccAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCa < 2:2462652/93‑1 (MQ=255)
cgccAGGACGGATAAAGAAATTTCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAt > 2:2187290/1‑93 (MQ=255)
|
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT > NC_000913/3998197‑3998376
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCA‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTC > NC_000913/3998198‑3998383
|
ACTGCACCGCAAACTGATTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCA‑GG < SRR4302535.313416/94‑1 (MQ=60)
ACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCA‑GG < SRR4302535.4188483/94‑1 (MQ=60)
ACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCA‑GG < SRR4302535.121784/94‑1 (MQ=60)
GCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACG < SRR4302535.146494/94‑1 (MQ=60)
CCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGAT < SRR4302535.3557008/94‑1 (MQ=60)
CGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATA < SRR4302535.3626625/94‑1 (MQ=60)
GCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAA < SRR4302535.4646513/94‑1 (MQ=60)
CAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAA > SRR4302535.2989492/1‑94 (MQ=60)
CAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAA > SRR4302535.1171859/1‑94 (MQ=60)
AAACTGTATATCTTTACTGGTTTTGAACGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAG < SRR4302535.2300280/94‑1 (MQ=60)
AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAG < SRR4302535.3020028/94‑1 (MQ=60)
AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAG > SRR4302535.3877858/1‑94 (MQ=60)
AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAG < SRR4302535.4036601/94‑1 (MQ=60)
AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAG < SRR4302535.2300279/94‑1 (MQ=60)
AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAG > SRR4302535.2373717/1‑94 (MQ=60)
CTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAA < SRR4302535.1476090/94‑1 (MQ=60)
TGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAAT > SRR4302535.558126/1‑94 (MQ=60)
TGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAAT < SRR4302535.2830916/94‑1 (MQ=60)
TGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAAT > SRR4302535.1042597/1‑94 (MQ=60)
GAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATT > SRR4302535.4448472/1‑94 (MQ=60)
GAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATT < SRR4302535.1942999/94‑1 (MQ=60)
AATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTC > SRR4302535.4455008/1‑94 (MQ=60)
AATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTC < SRR4302535.4118530/94‑1 (MQ=60)
ATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGATGGATAAAGAAATTCC < SRR4302535.2654137/94‑1 (MQ=60)
CTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCT > SRR4302535.3711402/1‑94 (MQ=60)
TCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGGCTTTAGCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTT < SRR4302535.965187/94‑1 (MQ=60)
TCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTT < SRR4302535.3632757/94‑1 (MQ=60)
TCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTT < SRR4302535.1016168/94‑1 (MQ=60)
CTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTC < SRR4302535.320413/94‑1 (MQ=60)
TTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCAC < SRR4302535.2985294/94‑1 (MQ=60)
TACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACC > SRR4302535.4370758/1‑94 (MQ=60)
ACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCT > SRR4302535.52424/1‑94 (MQ=60)
CTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTG > SRR4302535.3001726/1‑94 (MQ=60)
TGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGA < SRR4302535.2026107/94‑1 (MQ=60)
GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAA > SRR4302535.2410528/1‑94 (MQ=60)
GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAG < SRR4302535.2556576/94‑1 (MQ=60)
GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAG < SRR4302535.3070883/94‑1 (MQ=60)
GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAG < SRR4302535.120331/94‑1 (MQ=60)
GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAG < SRR4302535.1350225/94‑1 (MQ=60)
GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAG < SRR4302535.849709/94‑1 (MQ=60)
GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAG > SRR4302535.222869/1‑94 (MQ=60)
TGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAG > SRR4302535.3850134/1‑94 (MQ=60)
AAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAT > SRR4302535.3520156/1‑94 (MQ=60)
AAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAT > SRR4302535.4077776/1‑94 (MQ=60)
GGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTT < SRR4302535.362793/94‑1 (MQ=60)
GCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTA > SRR4302535.3357042/1‑94 (MQ=60)
GCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTA < SRR4302535.1576632/94‑1 (MQ=60)
CATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAA < SRR4302535.1432535/94‑1 (MQ=60)
CATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAA < SRR4302535.3177837/94‑1 (MQ=60)
ATCCAGACGAACGATGCCGACTTTATCTCCCGCGTCATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC > SRR4302535.4445367/1‑94 (MQ=60)
ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC > SRR4302535.999425/1‑94 (MQ=60)
ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC < SRR4302535.1033343/94‑1 (MQ=60)
ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC > SRR4302535.2822904/1‑94 (MQ=60)
ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC > SRR4302535.2687220/1‑94 (MQ=60)
CAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCCG‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCC > SRR4302535.4444008/1‑94 (MQ=60)
CAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCC > SRR4302535.831610/1‑94 (MQ=60)
CAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCC < SRR4302535.2434745/94‑1 (MQ=60)
AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA > SRR4302535.1160627/1‑94 (MQ=60)
AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA > SRR4302535.4517311/1‑94 (MQ=60)
GAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTT < SRR4302535.1921873/94‑1 (MQ=60)
AACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTC < SRR4302535.3223730/94‑1 (MQ=60)
AACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTC < SRR4302535.2053556/94‑1 (MQ=60)
CGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTG > SRR4302535.2018018/1‑94 (MQ=60)
GATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGC > SRR4302535.1479809/1‑94 (MQ=60)
GCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGA < SRR4302535.1965328/94‑1 (MQ=60)
CCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAC < SRR4302535.2131420/94‑1 (MQ=60)
CCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAC < SRR4302535.4430052/94‑1 (MQ=60)
CGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACC > SRR4302535.1744849/1‑94 (MQ=60)
CGACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACC > SRR4302535.1959500/1‑94 (MQ=60)
ACTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGT > SRR4302535.906037/1‑94 (MQ=60)
CTTTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTT > SRR4302535.3028256/1‑94 (MQ=60)
TTATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTT < SRR4302535.2763152/94‑1 (MQ=60)
TATCTCCCGCGACATAAAACACGCCG‑CCAGGACGTATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTC < SRR4302535.427594/94‑1 (MQ=60)
TATCTCCCGCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTC > SRR4302535.4275219/1‑94 (MQ=60)
GCGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACA < SRR4302535.3661254/94‑1 (MQ=60)
CGACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAA > SRR4302535.2398962/1‑94 (MQ=60)
ACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC > SRR4302535.4460449/1‑94 (MQ=60)
ACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC < SRR4302535.786959/94‑1 (MQ=60)
ACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC < SRR4302535.1957485/94‑1 (MQ=60)
ACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC < SRR4302535.1212748/94‑1 (MQ=60)
ACATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGCTTTCGATGTACAAAC > SRR4302535.3773941/1‑94 (MQ=60)
CATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACC > SRR4302535.567210/1‑94 (MQ=60)
CATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACC > SRR4302535.2013943/1‑94 (MQ=60)
ATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTATAAACCG > SRR4302535.3856603/1‑94 (MQ=60)
ATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG < SRR4302535.1753531/94‑1 (MQ=60)
ATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG > SRR4302535.4497930/1‑94 (MQ=60)
ATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG > SRR4302535.1447213/1‑94 (MQ=60)
ATAAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG < SRR4302535.1983524/94‑1 (MQ=60)
AAAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAG < SRR4302535.4628531/94‑1 (MQ=60)
AAACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGC < SRR4302535.3812715/94‑1 (MQ=60)
AACACGCCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCG < SRR4302535.3929668/94‑1 (MQ=60)
CCG‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT < SRR4302535.3783806/94‑1 (MQ=60)
G‑CCAGGACGGATAAATAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG < SRR4302535.542239/94‑1 (MQ=60)
G‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG < SRR4302535.421505/94‑1 (MQ=60)
G‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG < SRR4302535.3061114/94‑1 (MQ=60)
G‑CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG < SRR4302535.3897975/94‑1 (MQ=60)
CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGC > SRR4302535.3914343/1‑94 (MQ=60)
cagGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCT < SRR4302535.2089367/91‑1 (MQ=60)
cagGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCT > SRR4302535.194383/4‑94 (MQ=60)
agGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTT > SRR4302535.1553898/3‑94 (MQ=60)
agGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTT > SRR4302535.327154/3‑94 (MQ=60)
G‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT < SRR4302535.2563634/94‑1 (MQ=60)
G‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT < SRR4302535.2356543/94‑1 (MQ=60)
G‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTT > SRR4302535.4118806/1‑94 (MQ=60)
GACGGATAAAGAAATTCCCTTCACGTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTC < SRR4302535.1542066/94‑1 (MQ=60)
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ACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCG‑CCA‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTC > NC_000913/3998198‑3998383
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
