Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,004,984 |
+CG |
coding (1516/1833 nt) |
recQ → |
ATP‑dependent DNA helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,004,983 | 1 | . | G | 99.5%
| 569.2
/ NA
| 188 | A505A (GCG→GCA) | recQ | ATP‑dependent DNA helicase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base G (93/93); minor base A (0/1); total (93/95) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
| * | NC_000913 | 4,004,983 | 2 | . | C | 99.5%
| 575.8
/ ‑4.0
| 189 | coding (1515/1833 nt) | recQ | ATP‑dependent DNA helicase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (93/95); total (93/96) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 |
Only 100 of 210 total aligned reads displayed.
CCGCCAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑T‑CG‑C‑‑G‑‑GAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAA > NC_000913/4004893‑4005060
||
ccGCCAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑g‑‑g < 1:2720483/93‑1 (MQ=255)
ccGCCAGATGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑g‑‑g < 1:2898594/93‑1 (MQ=255)
ccAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑g‑‑gcga > 2:311149/1‑90 (MQ=255)
ccAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑g‑‑gcga > 1:3649080/1‑90 (MQ=255)
cAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑g‑‑gcgaa > 2:2888600/1‑89 (MQ=255)
cAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑g‑‑gcgaa > 1:985558/1‑89 (MQ=255)
aTTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCctct < 1:2685500/93‑1 (MQ=255)
ttCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCtt > 1:2153598/1‑93 (MQ=255)
aCCTCGGCCTGGTGTCGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTCC‑TGCC‑C‑‑GGCGAATCCTCTTTGc > 2:3555238/1‑93 (MQ=255)
aCCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGc > 1:2538633/1‑93 (MQ=255)
ccTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCa < 1:603750/93‑1 (MQ=255)
cTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCaa < 1:1874533/93‑1 (MQ=255)
cTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCA‑C‑‑GGCGAATCCTCTTTGCaa < 2:4578636/93‑1 (MQ=255)
tCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑CGGG‑‑GAATCCTCTTTGCAAc > 2:4110046/1‑93 (MQ=255)
tCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAAc > 1:3274908/1‑93 (MQ=255)
tCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAAc < 1:3807126/93‑1 (MQ=255)
ggCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACtt < 2:2665299/93‑1 (MQ=255)
gCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtg > 2:2054614/1‑93 (MQ=255)
gCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtg > 1:1516186/1‑93 (MQ=255)
ccTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtgc < 2:2250776/93‑1 (MQ=255)
cTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtgcc > 1:2314699/1‑93 (MQ=255)
cTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtgcc < 2:4337371/93‑1 (MQ=255)
tGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtgccg > 1:1732575/1‑93 (MQ=255)
tGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtgccg < 2:2899863/93‑1 (MQ=255)
tGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtgccg > 1:3066609/1‑93 (MQ=255)
ggTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtgccgt > 1:44171/1‑93 (MQ=255)
gTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTtgccgtg > 2:917263/1‑93 (MQ=255)
cGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCcgc > 2:11/1‑93 (MQ=255)
gCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCcgcg > 2:3206024/1‑93 (MQ=255)
gCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCcgcg > 1:397388/1‑93 (MQ=255)
cAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGt < 1:1556481/93‑1 (MQ=255)
aaaaTATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTa > 1:1622143/1‑93 (MQ=255)
aaaTATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTAt > 2:3777329/1‑93 (MQ=255)
aaTATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATc < 2:2576013/93‑1 (MQ=255)
aaTATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATc > 2:1577305/1‑93 (MQ=255)
atTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTg > 2:1794647/1‑93 (MQ=255)
atTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTg < 1:636805/93‑1 (MQ=255)
ttGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTgg > 2:2520985/1‑93 (MQ=255)
ttGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGAG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTgg < 1:2512785/93‑1 (MQ=255)
cccAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGgcgc > 1:2101561/1‑93 (MQ=255)
ccAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCt > 1:1090251/1‑93 (MQ=255)
cAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTc > 1:4667810/1‑93 (MQ=255)
cAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTc > 2:3447522/1‑93 (MQ=255)
cATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCaaa < 2:804879/93‑1 (MQ=255)
aTTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAAc < 2:3650070/93‑1 (MQ=255)
aTTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAAc > 1:2308255/1‑93 (MQ=255)
ttCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAAcc < 2:3179396/93‑1 (MQ=255)
tCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCGCC‑‑GC‑GAATCCTCTGTGCAACTTGCCGTGCCGCGTATCGTGACGCTCAAAcca > 2:38655/1‑92 (MQ=255)
tCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCg > 2:1983702/1‑93 (MQ=255)
cTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGa > 2:3072394/1‑93 (MQ=255)
cTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGa > 2:3083271/1‑93 (MQ=255)
cTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGa > 1:2492350/1‑93 (MQ=255)
tGCCCTACACCGGACAGAGGCCGCGCTCCCGGTGC‑TGCG‑C‑‑GACGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGaa < 2:2501729/93‑1 (MQ=255)
tGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGaa > 2:1446960/1‑93 (MQ=255)
gCCCTACAACTGACAGAGGCCGCGCGCCCGGTGCTT‑CG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGaaa > 1:4301599/1‑93 (MQ=255)
gCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGaaa > 2:2801709/1‑93 (MQ=255)
cccTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAg < 1:3536085/93‑1 (MQ=255)
ccTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGc < 2:1603966/93‑1 (MQ=255)
ccTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGc < 2:3710452/93‑1 (MQ=255)
ccTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGc < 1:1112549/93‑1 (MQ=255)
ccTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGc > 1:3410768/1‑93 (MQ=255)
ccTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGc > 1:293277/1‑93 (MQ=255)
cTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCg > 2:1352725/1‑93 (MQ=255)
cTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCg > 2:2100698/1‑93 (MQ=255)
cTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCg < 2:238665/93‑1 (MQ=255)
tACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGa > 1:705105/1‑93 (MQ=255)
tACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGa < 1:1931694/93‑1 (MQ=255)
acacCTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGAt < 2:4231789/93‑1 (MQ=255)
aCAACTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGAt < 2:3896383/93‑1 (MQ=255)
cAACTGACAGAGGCCGCGCGCCCGGTGC‑TGAG‑C‑‑GGCGAATACTCTTTGCAACTTGACGTGCCGCGCATCGTGGCGCTCAAACCGAAAGCGATg > 2:2872550/1‑93 (MQ=255)
aaCTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GACGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTAAAACCGAAAGCGATGc < 2:2036718/93‑1 (MQ=255)
aCTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCGGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCa > 2:561852/1‑93 (MQ=255)
aCTGACAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCa > 1:3468117/1‑93 (MQ=255)
aCAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGaaa < 1:2762237/93‑1 (MQ=255)
aCAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGaaa > 2:1505923/1‑93 (MQ=255)
aCAGAGGCCGCGCGCCCGGTCC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGaaa < 2:1242535/93‑1 (MQ=255)
cAGAGGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAAt < 1:3322027/93‑1 (MQ=255)
agagGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATc > 1:4230880/1‑93 (MQ=255)
gagGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATGGTGGCGCTCAAACCGAAAGCGATGCAGAAATCg < 1:868770/93‑1 (MQ=255)
gagGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCg < 2:2200322/93‑1 (MQ=255)
gagGCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCg < 2:761356/93‑1 (MQ=255)
ggCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGtt < 2:4529505/93‑1 (MQ=255)
ggCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGtt > 1:1461741/1‑93 (MQ=255)
ggCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGtt > 1:2592817/1‑93 (MQ=255)
gCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTc < 2:1167481/93‑1 (MQ=255)
gCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTc < 1:2360333/93‑1 (MQ=255)
gCCGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTc > 2:4069755/1‑93 (MQ=255)
ccGCGCGCCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTcg < 1:3009913/93‑1 (MQ=255)
gggcgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTcggc < 1:2302815/91‑1 (MQ=255)
gcgcgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTcggc < 2:3006694/93‑1 (MQ=255)
gcgcgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTcggc < 2:634105/93‑1 (MQ=255)
gcgcgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTcggc < 2:1436857/93‑1 (MQ=255)
gcgcgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTcggc > 1:4187246/1‑93 (MQ=255)
gcgcgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTcggc > 2:467985/1‑93 (MQ=255)
cgcgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTcggcg < 1:1020940/93‑1 (MQ=255)
cgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCggcggc > 2:3520779/1‑93 (MQ=255)
cgcCCGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCggcggc < 1:3839777/93‑1 (MQ=255)
ccccGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCa < 1:3318750/92‑1 (MQ=255)
cccGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCaa > 1:4052102/1‑93 (MQ=255)
cccGGTGC‑TGCG‑C‑‑GGCGAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCaa > 1:4500301/1‑93 (MQ=255)
||
CCGCCAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑T‑CG‑C‑‑G‑‑GAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAA > NC_000913/4004893‑4005060
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGCCAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑T‑‑‑CGCG‑‑G‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAACTGT > NC_000913/4004893‑4005077
|
CCGCCAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCG‑‑G‑‑A < SRR4302535.3335101/94‑1 (MQ=60)
CTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCT < SRR4302535.1376601/94‑1 (MQ=60)
TATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCT < SRR4302535.3998720/94‑1 (MQ=60)
GATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCT < SRR4302535.4370362/94‑1 (MQ=60)
ATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTT > SRR4302535.2169075/1‑94 (MQ=60)
ATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTT < SRR4302535.2704702/94‑1 (MQ=60)
TCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTG < SRR4302535.1845053/94‑1 (MQ=60)
CACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGC > SRR4302535.2556921/1‑94 (MQ=60)
ACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCA > SRR4302535.632779/1‑94 (MQ=60)
CCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAA < SRR4302535.607974/94‑1 (MQ=60)
CTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAAC > SRR4302535.3798572/1‑94 (MQ=60)
CTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAAC > SRR4302535.3297653/1‑94 (MQ=60)
CTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAAC < SRR4302535.1888038/94‑1 (MQ=60)
CTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAAC < SRR4302535.2751499/94‑1 (MQ=60)
TCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACT < SRR4302535.3833381/94‑1 (MQ=60)
GGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTG > SRR4302535.1527107/1‑94 (MQ=60)
GGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTG > SRR4302535.1913196/1‑94 (MQ=60)
CCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCC > SRR4302535.2331260/1‑94 (MQ=60)
CCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCC > SRR4302535.4468816/1‑94 (MQ=60)
CCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCC < SRR4302535.1559629/94‑1 (MQ=60)
CCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCC > SRR4302535.3855143/1‑94 (MQ=60)
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCG > SRR4302535.1745097/1‑94 (MQ=60)
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCG > SRR4302535.2983430/1‑94 (MQ=60)
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCG > SRR4302535.3088037/1‑94 (MQ=60)
TGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGT > SRR4302535.44504/1‑94 (MQ=60)
TGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGT < SRR4302535.337830/94‑1 (MQ=60)
ACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGC < SRR4302535.2325127/94‑1 (MQ=60)
CGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCG > SRR4302535.400174/1‑94 (MQ=60)
CAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTA > SRR4302535.1633853/1‑94 (MQ=60)
CAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTA < SRR4302535.1567701/94‑1 (MQ=60)
AAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTAT > SRR4302535.1077493/1‑94 (MQ=60)
AAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGTCGCGTATC < SRR4302535.2335349/94‑1 (MQ=60)
AAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATC > SRR4302535.3083900/1‑94 (MQ=60)
ATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGT > SRR4302535.804141/1‑94 (MQ=60)
ATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGG < SRR4302535.1463548/94‑1 (MQ=60)
ATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGG < SRR4302535.641245/94‑1 (MQ=60)
TTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TGAGCGGC‑‑G‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGC < SRR4302535.2530902/94‑1 (MQ=60)
TTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGC < SRR4302535.4131639/94‑1 (MQ=60)
TGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCG < SRR4302535.2003256/94‑1 (MQ=60)
TGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCG > SRR4302535.2292711/1‑94 (MQ=60)
GCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGC > SRR4302535.2116717/1‑94 (MQ=60)
CCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCT > SRR4302535.927924/1‑94 (MQ=60)
CCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCT > SRR4302535.1098021/1‑94 (MQ=60)
CCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCT < SRR4302535.2541041/94‑1 (MQ=60)
CCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTC < SRR4302535.1484656/94‑1 (MQ=60)
CCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTC > SRR4302535.4699353/1‑94 (MQ=60)
AGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAA > SRR4302535.270469/1‑94 (MQ=60)
CATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAAC > SRR4302535.2324770/1‑94 (MQ=60)
CATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAAC > SRR4302535.287455/1‑94 (MQ=60)
CATTCTGCCATACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAAC < SRR4302535.4286573/94‑1 (MQ=60)
ATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACC < SRR4302535.1100201/94‑1 (MQ=60)
TTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAcatcg > SRR4302535.4353927/1‑89 (MQ=60)
TCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGA > SRR4302535.2510336/1‑94 (MQ=60)
TGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGCTT‑‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAA > SRR4302535.4331030/1‑94 (MQ=60)
TGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAA > SRR4302535.3452773/1‑94 (MQ=60)
TGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAA > SRR4302535.3534640/1‑94 (MQ=60)
GCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAG < SRR4302535.3200640/94‑1 (MQ=60)
CCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGC > SRR4302535.3434499/1‑94 (MQ=60)
CCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGC > SRR4302535.295328/1‑94 (MQ=60)
CCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGC < SRR4302535.3560632/94‑1 (MQ=60)
CCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCG > SRR4302535.3423461/1‑94 (MQ=60)
CCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCG < SRR4302535.1120486/94‑1 (MQ=60)
CTACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGA > SRR4302535.710054/1‑94 (MQ=60)
TACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGAT < SRR4302535.1945614/94‑1 (MQ=60)
TACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGAG > SRR4302535.2569074/1‑94 (MQ=60)
ACAACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATG < SRR4302535.2377504/94‑1 (MQ=60)
AACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCA > SRR4302535.3492218/1‑94 (MQ=60)
AACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCA < SRR4302535.1603655/94‑1 (MQ=60)
AACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCA < SRR4302535.2676630/94‑1 (MQ=60)
AACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCA > SRR4302535.3935430/1‑94 (MQ=60)
AACTGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCG‑‑GCTAATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCA < SRR4302535.2321738/94‑1 (MQ=60)
TGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAA < SRR4302535.2150675/94‑1 (MQ=60)
TGACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAA < SRR4302535.3344403/94‑1 (MQ=60)
ACAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAAT < SRR4302535.2781920/94‑1 (MQ=60)
CAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATC < SRR4302535.3345139/94‑1 (MQ=60)
CAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATC > SRR4302535.3605938/1‑94 (MQ=60)
CAGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATC > SRR4302535.4259833/1‑94 (MQ=60)
AGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCG < SRR4302535.4387196/94‑1 (MQ=60)
AGAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCG > SRR4302535.4241097/1‑94 (MQ=60)
GAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATGGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGT < SRR4302535.874917/94‑1 (MQ=60)
GAGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGT < SRR4302535.1987128/94‑1 (MQ=60)
AGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTT > SRR4302535.1472215/1‑94 (MQ=60)
AGGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTT > SRR4302535.2611444/1‑94 (MQ=60)
GGCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTC < SRR4302535.268507/94‑1 (MQ=60)
GCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCG > SRR4302535.2515869/1‑94 (MQ=60)
GCCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCG < SRR4302535.2377273/94‑1 (MQ=60)
GCCCCGCGCACGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCG < SRR4302535.1648312/94‑1 (MQ=60)
CCGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGG < SRR4302535.3030996/94‑1 (MQ=60)
CGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGC > SRR4302535.4215902/1‑94 (MQ=60)
CGCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGC > SRR4302535.2920946/1‑94 (MQ=60)
GGGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCG < SRR4302535.2319292/94‑1 (MQ=60)
GCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCG < SRR4302535.705761/94‑1 (MQ=60)
GCGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCG < SRR4302535.4262252/94‑1 (MQ=60)
CGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGG < SRR4302535.1028195/94‑1 (MQ=60)
CGCGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCACTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGG < SRR4302535.604091/94‑1 (MQ=60)
CGCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCA < SRR4302535.3866240/94‑1 (MQ=60)
GCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAA > SRR4302535.4531209/1‑94 (MQ=60)
GCCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAA > SRR4302535.4079843/1‑94 (MQ=60)
CCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAAC > SRR4302535.1159565/1‑94 (MQ=60)
CCCGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAAA > SRR4302535.1096636/1‑94 (MQ=60)
ccccggtgctgcgcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAA < SRR4302535.3341841/77‑1 (MQ=60)
CGGTGC‑TG‑‑CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTA > SRR4302535.1275382/1‑94 (MQ=60)
ggtgctgcgcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTAT < SRR4302535.44202/81‑1 (MQ=60)
ggtgctgcgcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTAT < SRR4302535.3808569/81‑1 (MQ=60)
gtgctgcgcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATG > SRR4302535.2680604/13‑94 (MQ=60)
tgctgcgcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGA > SRR4302535.4633515/12‑94 (MQ=60)
ctgcgcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATC > SRR4302535.4339666/10‑94 (MQ=60)
ctgcgcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATC < SRR4302535.3673709/85‑1 (MQ=60)
ctgcgcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATC > SRR4302535.292711/10‑94 (MQ=60)
CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA < SRR4302535.2446073/94‑1 (MQ=60)
CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA > SRR4302535.1164153/1‑94 (MQ=60)
CGCGGCG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA < SRR4302535.940442/94‑1 (MQ=60)
gcggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAA > SRR4302535.834361/6‑94 (MQ=60)
ggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAAC < SRR4302535.503855/91‑1 (MQ=60)
ggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAAC < SRR4302535.139299/91‑1 (MQ=60)
ggcG‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAAC < SRR4302535.3167289/91‑1 (MQ=60)
C‑‑G‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAACTG > SRR4302535.4245172/1‑94 (MQ=60)
G‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCACACTGT > SRR4302535.3364067/1‑94 (MQ=60)
G‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAACTGT < SRR4302535.51597/94‑1 (MQ=60)
G‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAACTGT > SRR4302535.1930306/1‑94 (MQ=60)
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CCGCCAGCTGATTCACCTCGGCCTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGC‑T‑‑‑CGCG‑‑G‑‑AATCCTCTTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCAAACTGT > NC_000913/4004893‑4005077
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
