Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,006,483 |
+C |
coding (183/207 nt) |
b4554 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,006,480 | 1 | . | C | 96.6%
| 618.1
/ 13.9
| 204 | coding (186/207 nt) | b4554 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (3/4); new base C (123/74); total (126/78) |
| Fisher's exact test for biased strand distribution p-value = 4.31e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.26e-01 |
Only 100 of 217 total aligned reads displayed.
GGCGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGG > NC_000913/4006388‑4006567
|
gcgcgcCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c > 1:95659/1‑93 (MQ=255)
cgcCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c‑ccc < 1:2979590/93‑2 (MQ=255)
cgcCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c‑ccc > 2:2217605/1‑92 (MQ=255)
gcCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c‑ccca < 2:2726216/93‑3 (MQ=255)
ccACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c‑cccaa > 2:4515322/1‑90 (MQ=255)
cACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑c‑cccaac > 2:602966/1‑89 (MQ=255)
ctgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑CCCAaccc < 2:1116935/93‑1 (MQ=255)
ctgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑CCCAaccc > 1:3281494/1‑93 (MQ=255)
tgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAAcccc > 1:3123142/1‑93 (MQ=255)
tgctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAAcccc < 1:2610419/93‑1 (MQ=255)
gctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCa > 2:3945825/1‑93 (MQ=255)
ctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCAc > 1:4398980/1‑93 (MQ=255)
ctgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCAc < 2:2409627/93‑1 (MQ=255)
tgGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACg > 1:3664733/1‑93 (MQ=255)
ggATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGc < 1:2209185/93‑1 (MQ=255)
ggATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGc < 2:1693955/93‑1 (MQ=255)
ggATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGc > 2:3367005/1‑93 (MQ=255)
aTTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCa < 1:4172719/93‑1 (MQ=255)
tttccAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCaa < 1:930833/90‑1 (MQ=255)
ccAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCa > 1:3269869/1‑93 (MQ=255)
gCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGca > 1:2435188/1‑93 (MQ=255)
aaaTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACaa < 1:3454943/93‑1 (MQ=255)
aaaTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACaa > 2:1203520/1‑93 (MQ=255)
aaTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAat < 1:1488548/93‑1 (MQ=255)
aaTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAat < 2:95652/93‑1 (MQ=255)
tCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAatat > 2:2207526/1‑93 (MQ=255)
tCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAatat < 1:1940572/93‑1 (MQ=255)
aaGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGa > 2:4360732/1‑93 (MQ=255)
aGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGaa > 1:3972437/1‑93 (MQ=255)
aGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGaa < 2:2868079/93‑1 (MQ=255)
aGTAAGCCGCCCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGaa < 1:848701/93‑1 (MQ=255)
gTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAAt > 1:2774154/1‑93 (MQ=255)
gTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAAt < 1:2349668/93‑1 (MQ=255)
tAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATc < 1:3883260/93‑1 (MQ=255)
tAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATc < 2:861228/93‑1 (MQ=255)
aGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGc > 2:3177569/1‑93 (MQ=255)
aGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGc < 1:2766670/93‑1 (MQ=255)
ccGCGCCTGCCCACTTCAACACTTCAAGCGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCCCAATATGAATCGCCa < 2:620974/93‑1 (MQ=255)
cgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTc < 1:2517806/93‑1 (MQ=255)
cgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTc < 1:2235183/93‑1 (MQ=255)
cTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCgg > 1:670668/1‑93 (MQ=255)
cTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCgg < 1:3398684/93‑1 (MQ=255)
cccACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCACCCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCt < 2:4668560/93‑1 (MQ=255)
cccACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCt > 1:4205572/1‑93 (MQ=255)
ccACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTg > 2:3570197/1‑93 (MQ=255)
acttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGaa < 2:1074445/93‑1 (MQ=255)
acttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGaa < 2:2028740/93‑1 (MQ=255)
acttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGaa < 1:798267/93‑1 (MQ=255)
acttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGaa < 1:573068/93‑1 (MQ=255)
cttcaacactccaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAg < 2:3201618/93‑1 (MQ=255)
ttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGc > 2:3150835/1‑93 (MQ=255)
ttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGc > 1:3346866/1‑93 (MQ=255)
tcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGT‑CTCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGcc > 2:1645066/1‑93 (MQ=255)
caacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGccc < 1:1295254/93‑1 (MQ=255)
aacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCa < 2:4139969/93‑1 (MQ=255)
aacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCa > 2:2677053/1‑93 (MQ=255)
aacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCa > 2:507802/1‑93 (MQ=255)
acacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAg > 1:4213107/1‑93 (MQ=255)
cacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGc > 2:3048994/1‑93 (MQ=255)
acttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa > 2:3758646/1‑93 (MQ=255)
acttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa > 2:1356009/1‑93 (MQ=255)
acttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa > 2:1448759/1‑93 (MQ=255)
acttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa > 1:475895/1‑93 (MQ=255)
acttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa > 1:1007337/1‑93 (MQ=255)
acttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa > 2:1962759/1‑93 (MQ=255)
cttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCaa > 2:4215970/1‑93 (MQ=255)
cttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCaa > 2:1813019/1‑93 (MQ=255)
ttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAt < 2:280082/93‑1 (MQ=255)
ttcaaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAt < 1:3119975/93‑1 (MQ=255)
caaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCGCAATATGAAGCGCCAGTCCGGTCTGAAGCCCAGCAATAg < 1:1613837/93‑1 (MQ=255)
caaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAg < 1:3563991/93‑1 (MQ=255)
caaACGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAg > 1:2394219/1‑93 (MQ=255)
aaaCGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGa > 2:3823727/1‑93 (MQ=255)
aaaCGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGa < 1:2001100/93‑1 (MQ=255)
aaCGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGAc > 2:3635162/1‑93 (MQ=255)
aaCGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGAc < 1:4596595/93‑1 (MQ=255)
aCGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACg > 2:752650/1‑93 (MQ=255)
cGCAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGc < 2:4291834/93‑1 (MQ=255)
cAATCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCa > 2:1237668/1‑93 (MQ=255)
aaTCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAc > 1:698495/1‑93 (MQ=255)
aaTCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAc > 1:1795416/1‑93 (MQ=255)
aaTCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAc > 1:3186396/1‑93 (MQ=255)
aaTCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGACCAGCAATAGACGCCAc > 2:1432598/1‑93 (MQ=255)
aTCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAcc < 2:3115327/93‑1 (MQ=255)
aTCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAcc > 1:3368203/1‑93 (MQ=255)
aTCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAcc > 2:2362437/1‑93 (MQ=255)
tCACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccg < 2:2916787/93‑1 (MQ=255)
tCACTGAGCGGGAAAATAGCGT‑CACCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccg > 1:462568/1‑93 (MQ=255)
cACTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgc < 1:1580893/93‑1 (MQ=255)
aCTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcg > 1:4283912/1‑93 (MQ=255)
aCTGAGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcg > 2:1178860/1‑93 (MQ=255)
aGCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcgccgc > 1:565983/1‑93 (MQ=255)
gCGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccgcgccgcg > 1:198543/1‑93 (MQ=255)
cGGGAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGa < 1:3712851/93‑1 (MQ=255)
gggAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGAt > 1:4345231/1‑93 (MQ=255)
ggAAAATAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATa > 1:1079310/1‑93 (MQ=255)
aaaaTAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAAc > 1:2640296/1‑93 (MQ=255)
aaaTAGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAAcc > 2:2565420/1‑93 (MQ=255)
aGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTgg > 1:4650737/1‑93 (MQ=255)
aGCGTCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTgg > 1:2903883/1‑93 (MQ=255)
|
GGCGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGT‑C‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGG > NC_000913/4006388‑4006567
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑T‑C‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGAG > NC_000913/4006390‑4006576
|
CGCGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑T‑C‑CC > SRR4302535.362404/1‑94 (MQ=60)
CGCCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑T‑C‑CCCA < SRR4302535.3000496/94‑1 (MQ=60)
CCACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAAC > SRR4302535.4332466/1‑94 (MQ=60)
CACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACC > SRR4302535.2068758/1‑94 (MQ=60)
ACTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCC > SRR4302535.3304284/1‑94 (MQ=60)
CTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCC < SRR4302535.3857126/94‑1 (MQ=60)
CTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCC > SRR4302535.3144892/1‑94 (MQ=60)
CTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCC > SRR4302535.333591/1‑94 (MQ=60)
CTGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCC > SRR4302535.600798/1‑94 (MQ=60)
TGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCA > SRR4302535.4261509/1‑94 (MQ=60)
TGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCA < SRR4302535.2629148/94‑1 (MQ=60)
TGCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCA > SRR4302535.2438239/1‑94 (MQ=60)
GCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCAC < SRR4302535.939058/94‑1 (MQ=60)
GCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCAC > SRR4302535.4429089/1‑94 (MQ=60)
GCTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCAC > SRR4302535.1863253/1‑94 (MQ=60)
CTGGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACG > SRR4302535.3690110/1‑94 (MQ=60)
GGATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCC < SRR4302535.2224920/94‑1 (MQ=60)
ATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAA < SRR4302535.4201279/94‑1 (MQ=60)
ATTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAA > SRR4302535.3143236/1‑94 (MQ=60)
TTTCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAAC < SRR4302535.937414/94‑1 (MQ=60)
TCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCA > SRR4302535.3292584/1‑94 (MQ=60)
CCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAG < SRR4302535.2000369/94‑1 (MQ=60)
AGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCA > SRR4302535.2452732/1‑94 (MQ=60)
AGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCA > SRR4302535.2380960/1‑94 (MQ=60)
CCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACA > SRR4302535.3297632/1‑94 (MQ=60)
CCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACA > SRR4302535.1793924/1‑94 (MQ=60)
AAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAAT < SRR4302535.2953031/94‑1 (MQ=60)
AAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAAT < SRR4302535.576484/94‑1 (MQ=60)
AAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAAT < SRR4302535.3478959/94‑1 (MQ=60)
AATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATA < SRR4302535.1499221/94‑1 (MQ=60)
AATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATA > SRR4302535.3266804/1‑94 (MQ=60)
AATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATA > SRR4302535.2208326/1‑94 (MQ=60)
TCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATG < SRR4302535.3155926/94‑1 (MQ=60)
TCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATG < SRR4302535.1954553/94‑1 (MQ=60)
ACAAGTAAGCCGCCCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATG < SRR4302535.2726091/94‑1 (MQ=60)
CAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGA < SRR4302535.3727304/94‑1 (MQ=60)
AAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAA > SRR4302535.3999571/1‑94 (MQ=60)
AAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAA > SRR4302535.1802257/1‑94 (MQ=60)
AGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAAT < SRR4302535.4239121/94‑1 (MQ=60)
AGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAAT > SRR4302535.2793907/1‑94 (MQ=60)
AGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAAT > SRR4302535.475227/1‑94 (MQ=60)
AGTAAGCCGCCCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAAT < SRR4302535.854670/94‑1 (MQ=60)
GTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATC < SRR4302535.2366515/94‑1 (MQ=60)
TACGCCGCGCCCGCCCCCTTCAACACTACAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCG < SRR4302535.2729693/94‑1 (MQ=60)
TAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCG < SRR4302535.467482/94‑1 (MQ=60)
TAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCG < SRR4302535.3909900/94‑1 (MQ=60)
AAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGC > SRR4302535.1611550/1‑94 (MQ=60)
AAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGC > SRR4302535.402017/1‑94 (MQ=60)
AGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCC < SRR4302535.2786373/94‑1 (MQ=60)
AGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCC > SRR4302535.3927587/1‑94 (MQ=60)
TCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCA < SRR4302535.4531303/94‑1 (MQ=60)
GCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCA > SRR4302535.2242479/1‑94 (MQ=60)
CGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGTGAAAATAGCGCC‑C‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGT < SRR4302535.3505602/94‑1 (MQ=60)
CGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCC < SRR4302535.2535954/94‑1 (MQ=60)
CGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCC < SRR4302535.2251084/94‑1 (MQ=60)
CCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCG < SRR4302535.682643/94‑1 (MQ=60)
CCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGG > SRR4302535.675350/1‑94 (MQ=60)
CTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGT < SRR4302535.3422332/94‑1 (MQ=60)
GCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCT > SRR4302535.4234353/1‑94 (MQ=60)
GCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCT > SRR4302535.1967907/1‑94 (MQ=60)
GCCCACTTCAACACTTCAAACGCAATCACTGAGCAGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCT > SRR4302535.737566/1‑94 (MQ=60)
ACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAG > SRR4302535.4382250/1‑94 (MQ=60)
ACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAG < SRR4302535.577090/94‑1 (MQ=60)
ACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAG > SRR4302535.602053/1‑94 (MQ=60)
ACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAG < SRR4302535.803871/94‑1 (MQ=60)
CTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGC > SRR4302535.3370182/1‑94 (MQ=60)
TTCAACACTTCAAACGCAATCACTGAGTGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCC < SRR4302535.2342023/94‑1 (MQ=60)
TTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCC < SRR4302535.3385661/94‑1 (MQ=60)
CAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCA < SRR4302535.1304493/94‑1 (MQ=60)
AACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAG > SRR4302535.4241941/1‑94 (MQ=60)
ACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGC > SRR4302535.939336/1‑94 (MQ=60)
CACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGGAGCCCAGCA > SRR4302535.4441031/1‑94 (MQ=60)
CACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCA > SRR4302535.1014495/1‑94 (MQ=60)
CACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCA > SRR4302535.479235/1‑94 (MQ=60)
ACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCACCCAGCACAATATGAATCGACAGTCCGGTCTGAAGCCCAGCAA > SRR4302535.2813913/1‑94 (MQ=60)
ACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAA > SRR4302535.2616285/1‑94 (MQ=60)
CTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGATTCGCCAGTCCGGTCTGAAGCCCAGCAAT < SRR4302535.3058446/94‑1 (MQ=60)
CTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAT > SRR4302535.3471884/1‑94 (MQ=60)
TTCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATA < SRR4302535.3141697/94‑1 (MQ=60)
TCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAG > SRR4302535.2411429/1‑94 (MQ=60)
TCAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAG > SRR4302535.252273/1‑94 (MQ=60)
CAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCGCAATATGAAGCGCCAGTCCGGTCTGAAGCCCAGCAATAGA < SRR4302535.1625468/94‑1 (MQ=60)
CAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGA > SRR4302535.3418213/1‑94 (MQ=60)
CAAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGA < SRR4302535.3588703/94‑1 (MQ=60)
AAACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGAC < SRR4302535.2015517/94‑1 (MQ=60)
AACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACG < SRR4302535.4627868/94‑1 (MQ=60)
AACGCAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACG < SRR4302535.1583814/94‑1 (MQ=60)
CAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAC > SRR4302535.703396/1‑94 (MQ=60)
CAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAC > SRR4302535.1808396/1‑94 (MQ=60)
CAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAC > SRR4302535.3208431/1‑94 (MQ=60)
CAATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAC > SRR4302535.1275323/1‑94 (MQ=60)
AATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACC > SRR4302535.3391639/1‑94 (MQ=60)
AATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACC < SRR4302535.1086255/94‑1 (MQ=60)
AATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACC > SRR4302535.816437/1‑94 (MQ=60)
ATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCG > SRR4302535.2789035/1‑94 (MQ=60)
ATCACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGGCTGAAGCCCAGCAATAGACGCCACCG > SRR4302535.911588/1‑94 (MQ=60)
ATCACTGAGCGGGAAAATAGCG‑T‑CACCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCG > SRR4302535.465802/1‑94 (MQ=60)
CACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCG < SRR4302535.1592304/94‑1 (MQ=60)
CACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCG > SRR4302535.4313218/1‑94 (MQ=60)
ACTGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGC > SRR4302535.1326869/1‑94 (MQ=60)
TGAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCG > SRR4302535.4652953/1‑94 (MQ=60)
GAGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGC > SRR4302535.569947/1‑94 (MQ=60)
AGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCG > SRR4302535.199906/1‑94 (MQ=60)
AGCGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCG < SRR4302535.3430215/94‑1 (MQ=60)
CGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGAT > SRR4302535.4374961/1‑94 (MQ=60)
CGGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGAT < SRR4302535.3738572/94‑1 (MQ=60)
GGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATA < SRR4302535.4095576/94‑1 (MQ=60)
GGGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATA > SRR4302535.1086991/1‑94 (MQ=60)
GGAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAA > SRR4302535.3156602/1‑94 (MQ=60)
GAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAAC > SRR4302535.2651395/1‑94 (MQ=60)
GAAAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAAC > SRR4302535.2659210/1‑94 (MQ=60)
AAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGAGGCCACCGCGCCGCGATAACCG > SRR4302535.4226004/1‑94 (MQ=60)
AAATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCG > SRR4302535.545342/1‑94 (MQ=60)
ATAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTG > SRR4302535.2324825/1‑94 (MQ=60)
TAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGG > SRR4302535.2924410/1‑94 (MQ=60)
TAGCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGG > SRR4302535.4682229/1‑94 (MQ=60)
GCG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTT < SRR4302535.4217415/94‑1 (MQ=60)
CG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTG > SRR4302535.3289699/1‑94 (MQ=60)
CG‑TCC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTG > SRR4302535.2410706/1‑94 (MQ=60)
gtcC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGA > SRR4302535.2946072/4‑94 (MQ=60)
tcC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG < SRR4302535.3207077/92‑1 (MQ=60)
tcC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG > SRR4302535.3908864/3‑94 (MQ=60)
tcC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG > SRR4302535.2853250/3‑94 (MQ=60)
tcC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG < SRR4302535.679761/92‑1 (MQ=60)
tcC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG < SRR4302535.491294/92‑1 (MQ=60)
tcC‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAG < SRR4302535.3463732/92‑1 (MQ=60)
C‑CCACCCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCG < SRR4302535.535287/94‑1 (MQ=60)
C‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCG < SRR4302535.673832/94‑1 (MQ=60)
C‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCG > SRR4302535.1306084/1‑94 (MQ=60)
C‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCG > SRR4302535.354471/1‑94 (MQ=60)
CAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGAG < SRR4302535.4601167/94‑1 (MQ=60)
CAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGAG < SRR4302535.1822368/94‑1 (MQ=60)
|
CGCGCCACTGCTGGATTCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCG‑T‑C‑CCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCGCGCCGCGATAACCGTGGTTGAGCGAG > NC_000913/4006390‑4006576
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
