Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,375 |
+A |
coding (458/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,372 | 1 | . | A | 100.0%
| 273.9
/ NA
| 76 | S152* (TCA→TAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (28/48); total (28/48) |
Only 100 of 104 total aligned reads displayed.
GCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑A‑AAGGCCATGCGCTGGAAG‑GC‑TGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCC > NC_000913/4008280‑4008449
|
gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTc > 2:4631955/1‑93 (MQ=255)
gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTc < 1:1994492/93‑1 (MQ=255)
gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTATCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTc < 1:3275404/93‑1 (MQ=255)
gtGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a < 1:200043/92‑1 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑a > 2:3949863/1‑93 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑a < 2:4659325/93‑1 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaa < 2:1821693/93‑2 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaa < 2:3637507/93‑2 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaa < 1:2156358/93‑2 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaag < 1:3369086/93‑3 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaag < 1:3503979/93‑3 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaag < 1:1882532/93‑3 (MQ=255)
aGCAGGCGATTAACGCGCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaag < 2:244867/93‑3 (MQ=255)
cAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaaggc < 2:4610130/93‑5 (MQ=255)
cAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaaggc < 1:4566620/93‑5 (MQ=255)
cAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaaggc < 1:809673/93‑5 (MQ=255)
cAGGCGATTAACGCTCGTTGGGGCGACCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑a‑aaaggc < 2:1238240/93‑5 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGTGGCG‑TTTCAA‑AAGGCCa < 2:524188/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCa < 1:3255323/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCa < 1:1408664/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCa > 2:378303/1‑93 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCa < 1:1200436/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCGTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCa < 1:1124133/93‑1 (MQ=255)
gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAGCCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCAt < 1:3398205/93‑1 (MQ=255)
gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCAt < 2:3494613/93‑1 (MQ=255)
gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCAt > 1:1336706/1‑93 (MQ=255)
cGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATg < 1:2966608/93‑1 (MQ=255)
gATTAGCGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATgc < 1:1649861/93‑1 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGTTTTC‑A‑AAGGCCATgc > 2:3037406/1‑93 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCCTgc > 2:3768821/1‑93 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATgc > 2:3757164/1‑93 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATgc > 2:2648648/1‑93 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATgc < 2:406433/93‑1 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAAGCCATgc > 1:1010122/1‑93 (MQ=255)
aTTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATgcg > 2:4130012/1‑93 (MQ=255)
ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATgcgc < 2:2889403/93‑1 (MQ=255)
ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATgcgc < 1:2570759/93‑1 (MQ=255)
ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑GTTCAA‑AAGGCCATgcgc > 2:150626/1‑93 (MQ=255)
ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑GTTCAA‑AAGGCCATgcgc > 2:2867331/1‑93 (MQ=255)
tAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCt > 1:3326041/1‑93 (MQ=255)
aaCGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTg < 1:2523393/93‑1 (MQ=255)
cGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGCG‑TTTCAA‑AAGGCCCTGCGCTGGa > 1:3332752/1‑93 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGaa < 2:2364678/93‑1 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGaa < 2:1645304/93‑1 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAAGCCATGCGCTTGaa > 2:2037370/1‑93 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCCGCG‑TTTCAA‑AAAGCCATGCGCTTGaa > 2:4370279/1‑93 (MQ=255)
cccGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑ACAAGGCCATGCGCCGGCAg > 2:547012/3‑93 (MQ=255)
tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAgc < 1:2463423/93‑2 (MQ=255)
tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAAGCCATGCGCTGGAAgc > 1:3949962/1‑92 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGCG‑GTTCAA‑AAGGCCATGAGCTGGAAgcgg > 2:573336/1‑90 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAgcgg < 2:2846331/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑GTTCAA‑AAAGCCATGCGCTGGAAgcgg > 1:1683766/1‑90 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGCAGCGG‑TGGCG‑‑‑‑a > 2:2584046/1‑93 (MQ=255)
gCGAGCGCGTCAACGTCAGTTCCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑a < 1:3422101/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aa < 1:3182967/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAAGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aa > 2:1849334/1‑93 (MQ=255)
gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aag < 1:3581944/93‑2 (MQ=255)
gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aag < 1:575495/93‑2 (MQ=255)
gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aag > 2:2756240/1‑92 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aaga > 2:2283480/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aaga > 2:2329246/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAAGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aaga > 1:1052050/1‑91 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aagaaa < 2:2369141/93‑5 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 1:4432993/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:3254248/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 1:2592961/93‑1 (MQ=255)
tGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 1:3632859/93‑3 (MQ=255)
tGGAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 1:3793677/93‑3 (MQ=255)
ggAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 1:1240529/1‑90 (MQ=255)
gAAGTGATGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 1:1051163/93‑5 (MQ=255)
gAAGTGATGGCGGGCGGCG‑GTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt > 1:3702178/1‑89 (MQ=255)
aTGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 2:760103/93‑1 (MQ=255)
aTGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 2:229684/93‑1 (MQ=255)
aTGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg > 2:1077404/1‑93 (MQ=255)
tGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:1566229/93‑1 (MQ=255)
tGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:1894017/93‑1 (MQ=255)
tGGCGGGCGGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:3374702/93‑1 (MQ=255)
ggcgggcgGCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:401856/93‑1 (MQ=255)
ggcgggcgGCG‑TTTCAA‑AAGGCCATGCGCTGGAAG‑CCGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 2:3408020/93‑1 (MQ=255)
gcgggcggCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg < 1:3117785/93‑1 (MQ=255)
gcgggcggCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg < 2:1467147/93‑1 (MQ=255)
gggcggCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 1:4425676/93‑1 (MQ=255)
gggcggCG‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 1:1119358/93‑1 (MQ=255)
gcggcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg > 1:4457103/1‑93 (MQ=255)
cggcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 2:3526130/93‑1 (MQ=255)
cggcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga > 1:4576177/1‑93 (MQ=255)
ggcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:4523682/1‑93 (MQ=255)
ggcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:516542/1‑93 (MQ=255)
ggcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:2669860/93‑1 (MQ=255)
ggcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:4322943/93‑1 (MQ=255)
ggcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:2958163/93‑1 (MQ=255)
gcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgggg > 1:2074904/1‑90 (MQ=255)
gcg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:2058391/1‑93 (MQ=255)
cg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc > 2:4150932/1‑93 (MQ=255)
cg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc > 1:2192640/1‑93 (MQ=255)
cg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 1:1265185/93‑1 (MQ=255)
cg‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:1382101/93‑1 (MQ=255)
g‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc < 2:1470272/93‑1 (MQ=255)
g‑TTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:1671891/1‑93 (MQ=255)
g‑TTTCAA‑AAGGCCATGCGCAGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:4571105/1‑93 (MQ=255)
|
GCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑A‑AAGGCCATGCGCTGGAAG‑GC‑TGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCC > NC_000913/4008280‑4008449
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008284‑4008458
|
GAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAAG < SRR4302535.2171850/94‑1 (MQ=60)
AGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAagg < SRR4302535.3528330/94‑4 (MQ=60)
AGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAagg < SRR4302535.3392528/94‑4 (MQ=60)
AGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAagg < SRR4302535.1896100/94‑4 (MQ=60)
CAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCC < SRR4302535.815336/94‑1 (MQ=60)
CAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCC < SRR4302535.4597771/94‑1 (MQ=60)
CAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCC > SRR4302535.3431743/1‑94 (MQ=60)
AGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGG‑GTTTC‑AAAaagcca > SRR4302535.3417237/1‑88 (MQ=60)
AGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCA < SRR4302535.3623537/94‑1 (MQ=60)
AGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCA < SRR4302535.4173024/94‑1 (MQ=60)
AGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAaaggca > SRR4302535.740264/1‑88 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAT < SRR4302535.1209037/94‑1 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAT > SRR4302535.1346241/1‑94 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAT < SRR4302535.1418726/94‑1 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAT < SRR4302535.3277940/94‑1 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCGTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAT < SRR4302535.1132156/94‑1 (MQ=60)
GCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAGCCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATG < SRR4302535.3421849/94‑1 (MQ=60)
CGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGC < SRR4302535.2987421/94‑1 (MQ=60)
CGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATGC > SRR4302535.1017299/1‑94 (MQ=60)
GATTAGCGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCG < SRR4302535.1661791/94‑1 (MQ=60)
ATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAaagccatggcc > SRR4302535.3779757/1‑83 (MQ=60)
TTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCT > SRR4302535.3349186/1‑94 (MQ=60)
TTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCT < SRR4302535.2589241/94‑1 (MQ=60)
AACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGG < SRR4302535.2541577/94‑1 (MQ=60)
ACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGC‑GTTTCAAAAGGCCCTGCGCTGGA > SRR4302535.3355947/1‑94 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCGCTAACTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAG < SRR4302535.641192/94‑1 (MQ=60)
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATGCGCTGGAAG‑C > SRR4302535.3976930/1‑94 (MQ=60)
TCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcg < SRR4302535.2481186/94‑3 (MQ=60)
CGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAAGCCATGCGCTGGAAGcgg > SRR4302535.1695960/1‑91 (MQ=60)
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAACGCCATGCGCTGGAAGcggtggc > SRR4302535.4250813/1‑87 (MQ=60)
GGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcg < SRR4302535.485115/94‑9 (MQ=60)
GCGAGCGCGTCAACGTCAGTTCCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AA < SRR4302535.3445904/94‑1 (MQ=60)
CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaag < SRR4302535.3204960/94‑12 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaaga < SRR4302535.2694038/94‑13 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaaga < SRR4302535.3606788/94‑13 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaaga < SRR4302535.579534/94‑13 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATGCGCTGGAAGcggtggcgaaga > SRR4302535.1059533/1‑82 (MQ=60)
TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaa > SRR4302535.3556017/1‑80 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCCTGCGCTGGAAGcggtgggggagaaac > SRR4302535.4128343/1‑79 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTGGAAG‑Gggggggggagaaac > SRR4302535.1786769/1‑80 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact < SRR4302535.3044760/94‑17 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact < SRR4302535.762486/94‑17 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact > SRR4302535.966024/1‑78 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact < SRR4302535.1147712/94‑17 (MQ=60)
CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactg < SRR4302535.4048510/94‑18 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg > SRR4302535.4344823/1‑76 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302535.3472692/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302535.2166428/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302535.1327585/94‑19 (MQ=60)
TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactggg < SRR4302535.3848928/94‑20 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTGGAAGcggtggcgtagaaactgggg > SRR4302535.1566742/1‑74 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggct > SRR4302535.2113793/1‑73 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggct < SRR4302535.4037668/94‑22 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGagggggcgaagacactggcga > SRR4302535.2629781/1‑73 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302535.3178487/94‑25 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302535.2466397/94‑25 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302535.4352304/94‑25 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTtgaagcgggggcgaagaaactgggctaca > SRR4302535.3983892/1‑65 (MQ=60)
GCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacag < SRR4302535.4169011/94‑26 (MQ=60)
CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaactgggctacagc > SRR4302535.4097557/1‑68 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTGGgagcgggggcgaagaaactgggctacagcc > SRR4302535.3654850/1‑64 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302535.1356051/94‑29 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302535.2446853/94‑29 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg < SRR4302535.3086875/94‑30 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg > SRR4302535.3054709/1‑65 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATACGCTGGAAGcggtggcgaagaaaatgggctacagcctgtgg > SRR4302535.1195847/1‑62 (MQ=60)
TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaactgggctacagcctgaagg > SRR4302535.752788/1‑61 (MQ=60)
TACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGGCATGGGCTGGgagcggcgggggaggaactggggttaagcctgaaaggtt > SRR4302535.608055/1‑55 (MQ=60)
CACCTTAACCTGTCTGGAACTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggat < SRR4302535.323955/94‑36 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt > SRR4302535.1022596/1‑58 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt > SRR4302535.2372067/1‑58 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt < SRR4302535.2373920/94‑37 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt > SRR4302535.4496868/1‑58 (MQ=60)
CCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattg < SRR4302535.624054/94‑38 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt > SRR4302535.664935/1‑56 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt < SRR4302535.1939338/94‑39 (MQ=60)
TTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgta < SRR4302535.4479187/94‑40 (MQ=60)
TTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgta < SRR4302535.3600699/94‑40 (MQ=60)
TAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtat < SRR4302535.194243/94‑41 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGCGGTTTA‑AAAGGCCATGCGCTGGAAGcggtggcgaagaaactggggtatagcctgaaggattgtatt > SRR4302535.3721523/1‑53 (MQ=59)
AACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagccttaaggattgtatt > SRR4302535.344694/1‑53 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtatt > SRR4302535.1910445/1‑53 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattg < SRR4302535.1148870/94‑43 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattg < SRR4302535.4534257/94‑43 (MQ=60)
CCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgc < SRR4302535.2364382/94‑44 (MQ=60)
CCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgc < SRR4302535.3527012/94‑44 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg > SRR4302535.3966727/1‑50 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302535.3237860/94‑45 (MQ=60)
GTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtt < SRR4302535.3125872/94‑47 (MQ=60)
GTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcggt > SRR4302535.125403/1‑48 (MQ=60)
TCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgttt < SRR4302535.4463369/94‑48 (MQ=60)
TCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgttt < SRR4302535.2611590/94‑48 (MQ=60)
TGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttgg > SRR4302535.1249385/1‑45 (MQ=60)
TGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttgg < SRR4302535.3819833/94‑50 (MQ=60)
TGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttgg < SRR4302535.3658036/94‑50 (MQ=60)
GGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggt > SRR4302535.3727819/1‑44 (MQ=57)
GAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtg < SRR4302535.1058638/94‑52 (MQ=60)
AAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtga < SRR4302535.1591254/94‑53 (MQ=60)
AAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtga < SRR4302535.4195952/94‑53 (MQ=60)
AGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgcg > SRR4302535.3132113/1‑41 (MQ=60)
TGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacgg > SRR4302535.3700461/1‑39 (MQ=60)
GATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacggg < SRR4302535.1613095/94‑57 (MQ=56)
GATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacggg < SRR4302535.3068576/94‑57 (MQ=56)
GATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacggg < SRR4302535.222542/94‑57 (MQ=56)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302535.4497158/3‑94 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302535.2493380/3‑94 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302535.2250476/92‑1 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302535.2044988/3‑94 (MQ=18)
A‑AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302535.4621718/1‑94 (MQ=19)
A‑AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302535.1057512/1‑94 (MQ=19)
AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGC > SRR4302535.3891097/1‑94 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT > SRR4302535.4686452/1‑94 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302535.4480591/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302535.2927986/94‑1 (MQ=21)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302535.3137592/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302535.4663384/94‑1 (MQ=23)
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GAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008284‑4008458
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
