Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,469 |
+G |
intergenic (+36/‑197) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,466 | 1 | . | G | 97.6%
| 379.3
/ 1.5
| 124 | intergenic (+33/‑200) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base G (55/66); total (57/67) |
| Fisher's exact test for biased strand distribution p-value = 5.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 126 total aligned reads displayed.
ACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGC‑GGG‑‑AAA‑‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008400‑4008551
|
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGc > 2:2827746/4‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGc < 2:2551572/90‑1 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCa > 1:1030894/3‑93 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCa < 1:3975408/91‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAg < 2:826713/92‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAg < 2:4494890/92‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAg < 2:483481/92‑1 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGt < 1:2506546/93‑1 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTgc < 1:3340585/93‑2 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTgc < 2:2953294/93‑2 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTgcg > 1:1686572/1‑91 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTgcg > 2:2407127/1‑91 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTgcg > 1:689379/1‑91 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTgcg > 2:2696585/1‑91 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCgcacc > 2:4246988/3‑93 (MQ=255)
ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCgcaccg > 1:750969/2‑92 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAg < 1:3892728/93‑1 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAg < 1:960598/93‑1 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAg > 1:1192872/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGc < 1:2756240/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGc > 1:1246741/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCg > 2:1980376/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCg > 2:4258583/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGC‑GGGGTAAG‑‑GCTGCATTATGGGCAGTGCGCACCAGCg > 2:3586240/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTc > 2:2104761/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTc > 2:1623503/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTc < 2:1727104/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTc < 2:4469741/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTc < 2:3541119/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTc < 1:2805984/93‑1 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:399184/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:4164986/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCt < 1:4531157/93‑1 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt > 2:2660699/5‑93 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt > 2:1121649/5‑93 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:3075612/91‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:2683642/91‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc > 2:1871860/3‑93 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 1:1450524/91‑1 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa < 1:1791295/93‑1 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 1:81779/1‑93 (MQ=255)
ggACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa < 1:2233640/92‑1 (MQ=255)
gACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAg > 2:3324421/1‑93 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑c < 2:110176/93‑1 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑g < 1:1271192/93‑1 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑g > 2:4670876/1‑93 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑gg < 2:1252333/93‑2 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑gg > 1:1064987/1‑92 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑gg > 1:4165025/1‑92 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑gga < 1:3208493/93‑3 (MQ=255)
tGAACGACGCGGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑ggaag < 1:3075847/93‑5 (MQ=255)
tGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑ggaag < 2:788028/93‑5 (MQ=255)
tGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑ggaag < 2:3992017/93‑5 (MQ=255)
tGAACGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑ggaag < 1:3060309/93‑5 (MQ=255)
aaCGACGCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTg < 1:3223860/93‑1 (MQ=255)
acgacgCCGAGATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGa < 1:451557/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGa < 1:1118114/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGa < 2:4116374/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGa > 2:2467002/1‑93 (MQ=255)
cgacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAt < 2:3949962/93‑1 (MQ=255)
gccgcgGAAATGCTGTCGATGGGG‑GGG‑‑AAAG‑GCTGCAGTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAtt < 2:202191/91‑1 (MQ=255)
gacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAtt < 2:103893/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAtt > 2:4158913/1‑93 (MQ=255)
gacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAtt > 2:2223405/1‑93 (MQ=255)
gacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAtt < 2:1314234/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAtt < 1:4441255/93‑1 (MQ=255)
acgCCGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTg > 2:3987726/1‑93 (MQ=255)
acgCCGAAATGCTCTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTg < 1:2678236/93‑1 (MQ=255)
cGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTAc > 1:1390274/1‑93 (MQ=255)
cGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTAc > 1:4173572/1‑93 (MQ=255)
cGAAATGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTAc > 2:196956/1‑93 (MQ=255)
gAAATGCTGTCGCT‑GGC‑GGG‑‑AAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCCC‑GCAGTGATTGGTACt > 2:841908/1‑93 (MQ=255)
gAAATGCTGGCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAACTTCATCCCGAG‑CTGGAAGGGATTGGTACt > 1:2236980/1‑93 (MQ=255)
aaaTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTa > 1:1807128/1‑93 (MQ=255)
aaaTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTa > 2:4089899/1‑93 (MQ=255)
aaTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTaa < 1:3768821/93‑1 (MQ=255)
aaTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTaa < 1:890759/93‑1 (MQ=255)
aaTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTaa > 1:3391435/1‑93 (MQ=255)
aaTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTaa < 2:2098657/93‑1 (MQ=255)
aaTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTaa > 1:2327810/1‑93 (MQ=255)
aTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAAt > 2:3008086/1‑93 (MQ=255)
aTGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAAt > 1:2632541/1‑93 (MQ=255)
tGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATg > 1:2107200/1‑93 (MQ=255)
tGCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATg < 1:356852/93‑1 (MQ=255)
gCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGc < 2:2580693/93‑1 (MQ=255)
gCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGc > 1:3024996/1‑93 (MQ=255)
gCTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGc > 2:3400004/1‑93 (MQ=255)
cTGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGGGCACCAGCGTCTGAAAGACCTTCATACCGAG‑CTGGAAGGGATTGGTACTTATGcc > 1:3128615/1‑93 (MQ=255)
tGTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcg > 1:1690261/1‑93 (MQ=255)
gTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGTAGTGATTGGTACTAATGCcga > 1:920091/1‑93 (MQ=255)
gTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcga < 1:2055819/93‑1 (MQ=255)
gTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcga < 2:1568400/93‑1 (MQ=255)
gTCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcga < 1:3254248/93‑1 (MQ=255)
tCGAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcgac < 1:4613932/93‑1 (MQ=255)
gAT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcgacga < 1:2502888/93‑1 (MQ=255)
aT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGTCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac < 2:1479920/93‑1 (MQ=255)
aT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGGGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac > 2:430081/1‑93 (MQ=255)
aT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac < 2:4315304/93‑1 (MQ=255)
aT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac < 2:2255970/93‑1 (MQ=255)
aT‑GGCGGGG‑‑AAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac < 1:3757164/93‑1 (MQ=255)
|
ACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGAT‑GGC‑GGG‑‑AAA‑‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008400‑4008551
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCGCTGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCG > NC_000913/4008381‑4008560
|
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302535.3256569/71‑1 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG > SRR4302535.1508168/24‑94 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG > SRR4302535.923139/24‑94 (MQ=57)
ggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑G > SRR4302535.4113452/23‑94 (MQ=56)
aagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGTCGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GAA > SRR4302535.3812459/21‑94 (MQ=42)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA‑G < SRR4302535.4233280/76‑1 (MQ=53)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA‑G < SRR4302535.3360272/76‑1 (MQ=53)
cggtgtcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaagg < SRR4302535.1449641/77‑7 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc > SRR4302535.843260/17‑87 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc > SRR4302535.4371501/17‑87 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct < SRR4302535.2857901/79‑9 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct < SRR4302535.3930632/79‑9 (MQ=57)
ccaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCAT < SRR4302535.2780208/83‑1 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATT > SRR4302535.2628570/11‑94 (MQ=49)
aagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTA > SRR4302535.4576429/10‑94 (MQ=48)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTAT < SRR4302535.2354039/86‑1 (MQ=48)
gaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATG < SRR4302535.1021142/87‑1 (MQ=49)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGG < SRR4302535.3344291/88‑1 (MQ=51)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGG > SRR4302535.1760338/7‑94 (MQ=51)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGG < SRR4302535.3071604/94‑1 (MQ=50)
ctgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCA > SRR4302535.1038215/4‑94 (MQ=57)
tgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAG < SRR4302535.4002565/92‑1 (MQ=58)
GGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTG < SRR4302535.2524617/94‑1 (MQ=60)
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGC > SRR4302535.2050421/1‑94 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg < SRR4302535.3363861/94‑3 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302535.694210/1‑92 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302535.1698782/1‑92 (MQ=60)
TACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgc > SRR4302535.94673/1‑91 (MQ=60)
CAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgcac > SRR4302535.4034112/1‑89 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302535.4362005/4‑94 (MQ=60)
gcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgcaccg > SRR4302535.756261/3‑87 (MQ=60)
C‑CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAG > SRR4302535.1201421/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302535.1255636/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC < SRR4302535.967423/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302535.338688/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC < SRR4302535.3919415/94‑1 (MQ=60)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302535.2775887/94‑1 (MQ=57)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302535.2825932/94‑1 (MQ=57)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG < SRR4302535.4562173/94‑1 (MQ=60)
GATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGA > SRR4302535.57736/1‑94 (MQ=60)
ATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAA < SRR4302535.912953/94‑1 (MQ=60)
ATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAA < SRR4302535.3356104/94‑1 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG > SRR4302535.2401960/14‑94 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG < SRR4302535.1707369/81‑1 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG > SRR4302535.2795015/14‑94 (MQ=60)
gtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGA < SRR4302535.2467044/82‑1 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC < SRR4302535.582540/94‑1 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC > SRR4302535.635963/1‑94 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC > SRR4302535.2381732/1‑94 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC > SRR4302535.237125/1‑94 (MQ=60)
gtgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302535.2084021/85‑1 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT > SRR4302535.1034242/1‑94 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT > SRR4302535.2252083/1‑94 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302535.2084022/94‑1 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302535.2345907/94‑1 (MQ=60)
TGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT < SRR4302535.941555/94‑1 (MQ=60)
TGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT < SRR4302535.992706/94‑1 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA < SRR4302535.3945934/94‑1 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302535.1778076/1‑94 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302535.1862662/89‑1 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302535.1460901/94‑1 (MQ=60)
GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGA > SRR4302535.82362/1‑94 (MQ=60)
TGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG < SRR4302535.1804248/94‑1 (MQ=60)
GGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG < SRR4302535.2249525/94‑1 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302535.1072564/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302535.4193544/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG < SRR4302535.1280275/94‑1 (MQ=60)
GATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggaa < SRR4302535.3230716/94‑4 (MQ=60)
GATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggaa < SRR4302535.1253032/94‑4 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAG > SRR4302535.3196930/1‑94 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAG < SRR4302535.2667620/94‑1 (MQ=60)
TGAACGACGCGGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT < SRR4302535.3097308/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT < SRR4302535.3081714/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT > SRR4302535.985089/1‑94 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGA < SRR4302535.3246209/94‑1 (MQ=60)
ACGACGCCGAGATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT < SRR4302535.454719/94‑1 (MQ=60)
ACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT < SRR4302535.1126090/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG > SRR4302535.917468/1‑94 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302535.4471707/94‑1 (MQ=60)
ACGCCGAAATGCTCTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGG < SRR4302535.2697397/94‑1 (MQ=60)
CCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAC > SRR4302535.1400195/1‑94 (MQ=60)
CCGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAC > SRR4302535.4202139/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT < SRR4302535.2293395/94‑1 (MQ=60)
GAAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTA > SRR4302535.1820182/1‑94 (MQ=60)
AAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302535.3415029/1‑94 (MQ=60)
AAATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302535.2344464/1‑94 (MQ=60)
AATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT < SRR4302535.3058682/94‑1 (MQ=60)
AATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT < SRR4302535.3794835/94‑1 (MQ=60)
AATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT < SRR4302535.897072/94‑1 (MQ=60)
AATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT > SRR4302535.2651406/1‑94 (MQ=60)
ATGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATG > SRR4302535.2122399/1‑94 (MQ=60)
TGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGC > SRR4302535.3046173/1‑94 (MQ=60)
TGCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGC < SRR4302535.359317/94‑1 (MQ=60)
GCTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGGGCACCAGCGTCTGAAAGACCTTCATACCGAGCTGGAAGGGATTGGTACTTATGCC > SRR4302535.3150404/1‑94 (MQ=57)
CTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302535.1702494/1‑94 (MQ=60)
CTGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302535.1474228/94‑1 (MQ=60)
TGTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGTAGTGATTGGTACTAATGCCGA > SRR4302535.926616/1‑94 (MQ=60)
GTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302535.2070629/94‑1 (MQ=60)
GTCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302535.3276858/94‑1 (MQ=60)
TCGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACG < SRR4302535.4645279/94‑1 (MQ=60)
CGATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGA < SRR4302535.380924/94‑1 (MQ=60)
GATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302535.2520935/94‑1 (MQ=60)
ATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCCCCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG < SRR4302535.685392/94‑1 (MQ=60)
ATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG > SRR4302535.811241/1‑94 (MQ=60)
ATGGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG < SRR4302535.3783146/94‑1 (MQ=60)
GGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG < SRR4302535.3247612/94‑1 (MQ=60)
GGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG > SRR4302535.1462804/1‑94 (MQ=60)
GGC‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG > SRR4302535.4131587/1‑94 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCC > SRR4302535.3849761/1‑94 (MQ=60)
G‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCG > SRR4302535.3178349/1‑94 (MQ=60)
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TGCGCTGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCG > NC_000913/4008381‑4008560
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
