Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,491 |
2 bp→CG |
intergenic (+58/‑174) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,491 | 0 | G | C | 98.8%
| 526.7
/ NA
| 169 | intergenic (+58/‑175) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base C (70/97); total (72/97) |
| Fisher's exact test for biased strand distribution p-value = 1.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | NC_000913 | 4,008,492 | 0 | C | G | 100.0%
| 523.1
/ NA
| 165 | intergenic (+59/‑174) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (68/97); total (68/97) |
Only 100 of 174 total aligned reads displayed.
AGCTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAC > NC_000913/4008409‑4008576
||
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCgcacc > 1:4332377/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCgcacc > 2:4246988/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCgcacc > 2:4074519/3‑93 (MQ=255)
ccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCgcaccg > 1:750969/2‑92 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGGTGAACGGCGCCGTAATGCTGTCGAAGGCGGGG‑‑AAA‑‑GCCTGCATTATGGGCAGGGGGTACCAg > 2:1076668/1‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAg > 1:1192872/1‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAg < 1:3892728/93‑1 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAg < 1:960598/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGc > 1:336362/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGc < 1:2756240/93‑1 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCg > 2:1980376/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGTAAG‑‑G‑CTGCATTATGGGCAGTGCGCACCAGCg > 2:3586240/1‑93 (MQ=255)
aaGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGt < 2:1341619/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTc > 2:2104761/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTc > 2:1623503/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:399184/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCt < 1:4531157/93‑1 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:4164986/1‑93 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt > 2:1121649/5‑93 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:3075612/91‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:2683642/91‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc > 2:1871860/3‑93 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 1:81779/1‑93 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa < 1:1791295/93‑1 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑c < 2:110176/93‑1 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑g < 1:1271192/93‑1 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑gg > 1:1064987/1‑92 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑gg < 2:1252333/93‑2 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑gga < 1:3208493/93‑3 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑gga < 1:1244152/93‑3 (MQ=255)
aTGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑ggaa < 1:2648648/93‑4 (MQ=255)
aTGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑ggaa < 2:439256/93‑4 (MQ=255)
tGAACGACGCGGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑ggaag < 1:3075847/93‑5 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑ggaag < 1:3060309/93‑5 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTg < 1:3223860/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGa < 2:4116374/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGa > 2:2467002/1‑93 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAt < 2:3949962/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAtt > 2:2223405/1‑93 (MQ=255)
gacgCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGAtt < 1:4441255/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTg > 1:910991/1‑93 (MQ=255)
acgCCGAAATGCTCTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTg < 1:2678236/93‑1 (MQ=255)
gCCGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGt < 2:507341/93‑1 (MQ=255)
cGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTAc > 1:1390274/1‑93 (MQ=255)
cGAAATGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTAc > 1:4173572/1‑93 (MQ=255)
gAAATGCTGTCGCTGGC‑GGG‑‑AAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCCC‑GCAGTGATTGGTACt > 2:841908/1‑93 (MQ=255)
gAAATGCTGGCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAACTTCATCCCGAG‑CTGGAAGGGATTGGTACt > 1:2236980/1‑93 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTaa < 1:3768821/93‑1 (MQ=255)
aaTGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTaa < 2:2085270/93‑1 (MQ=255)
aTGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAAt > 2:3008086/1‑93 (MQ=255)
tGCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATg > 1:2107200/1‑93 (MQ=255)
gCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGc > 1:3024996/1‑93 (MQ=255)
gCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGc > 2:3400004/1‑93 (MQ=255)
gCTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGc < 2:2580693/93‑1 (MQ=255)
cTGTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGcc < 1:1463743/93‑1 (MQ=255)
gTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGTAGTGATTGGTACTAATGCcga > 1:920091/1‑93 (MQ=255)
gTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcga < 1:3254248/93‑1 (MQ=255)
gTCGATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcga < 2:1568400/93‑1 (MQ=255)
gATGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCcgacga < 2:2638556/93‑1 (MQ=255)
aTGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGGGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac > 2:430081/1‑93 (MQ=255)
aTGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCCCCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac < 1:680626/93‑1 (MQ=255)
aTGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac < 2:2255970/93‑1 (MQ=255)
aTGGCGGGG‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCgacgac < 1:3757164/93‑1 (MQ=255)
gcgggg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGAcgcg > 1:1452411/4‑93 (MQ=255)
gcgggg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGAcgcg > 1:4103495/4‑93 (MQ=255)
gcgggg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGAcgcg < 2:1336706/90‑1 (MQ=255)
cgggg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCgg < 2:4654945/91‑1 (MQ=255)
gggg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCggg > 1:338655/2‑92 (MQ=255)
gggg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGt < 1:4461489/92‑1 (MQ=255)
gggg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGt < 1:3579281/92‑1 (MQ=255)
gggg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGt < 1:3202892/92‑1 (MQ=255)
gg‑‑AAAG‑G‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGc > 2:1678308/1‑93 (MQ=255)
aaagg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCg > 1:3156432/5‑93 (MQ=255)
aagg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGc > 2:54098/4‑93 (MQ=255)
agg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCa > 2:4294051/3‑93 (MQ=255)
gg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAt < 1:1817108/92‑1 (MQ=255)
gg‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAt < 1:2349192/92‑1 (MQ=255)
g‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAtt < 1:2504309/93‑1 (MQ=255)
cTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTa < 1:3807552/93‑1 (MQ=255)
tGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAt > 1:1058156/1‑93 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc > 2:3526253/1‑93 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc > 1:620171/1‑93 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:1236797/93‑1 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 2:4100270/93‑1 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc > 1:4114126/1‑93 (MQ=255)
cATTAGGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCt < 2:3728277/93‑1 (MQ=255)
ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 1:2484749/93‑1 (MQ=255)
ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 1:2201822/93‑1 (MQ=255)
ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc > 2:3920307/1‑93 (MQ=255)
ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 1:2283480/93‑1 (MQ=255)
ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 2:2170902/93‑1 (MQ=255)
ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc > 2:1487235/1‑93 (MQ=255)
tATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCg < 2:342322/93‑1 (MQ=255)
tGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTa > 2:857525/1‑93 (MQ=255)
tGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCACATTATCTGCGTa < 2:3531500/93‑1 (MQ=255)
gggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaa > 1:2370385/1‑93 (MQ=255)
ggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaaa > 2:1733177/1‑93 (MQ=255)
ggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaaa < 1:3503039/93‑1 (MQ=255)
ggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaaa < 1:710534/93‑1 (MQ=255)
gCAGTGCGCACCAGCGGCTGAAAGACCTTCATCCCGAG‑CTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAc < 2:199647/93‑1 (MQ=255)
||
AGCTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAG‑CT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAC > NC_000913/4008409‑4008576
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCT > NC_000913/4008404‑4008579
|
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGC > SRR4302535.2050421/1‑94 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302535.4362005/4‑94 (MQ=60)
C‑CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAG > SRR4302535.1201421/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC < SRR4302535.967423/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC < SRR4302535.3919415/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302535.1255636/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302535.338688/1‑94 (MQ=60)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302535.2775887/94‑1 (MQ=57)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302535.2825932/94‑1 (MQ=57)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG < SRR4302535.4562173/94‑1 (MQ=60)
GATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGA > SRR4302535.57736/1‑94 (MQ=60)
ATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAA < SRR4302535.912953/94‑1 (MQ=60)
ATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAA < SRR4302535.3356104/94‑1 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG > SRR4302535.2401960/14‑94 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG > SRR4302535.2795015/14‑94 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG < SRR4302535.1707369/81‑1 (MQ=60)
gtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGA < SRR4302535.2467044/82‑1 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC < SRR4302535.582540/94‑1 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC > SRR4302535.635963/1‑94 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC > SRR4302535.237125/1‑94 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC > SRR4302535.2381732/1‑94 (MQ=60)
gtgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302535.2084021/85‑1 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT > SRR4302535.1034242/1‑94 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT > SRR4302535.2252083/1‑94 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302535.2345907/94‑1 (MQ=60)
TTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCT < SRR4302535.2084022/94‑1 (MQ=60)
TGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT < SRR4302535.992706/94‑1 (MQ=60)
TGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT < SRR4302535.941555/94‑1 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA < SRR4302535.3945934/94‑1 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302535.1778076/1‑94 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302535.1862662/89‑1 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302535.1460901/94‑1 (MQ=60)
GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGA > SRR4302535.82362/1‑94 (MQ=60)
TGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG < SRR4302535.1804248/94‑1 (MQ=60)
GGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG < SRR4302535.2249525/94‑1 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302535.4193544/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG < SRR4302535.1280275/94‑1 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302535.1072564/1‑94 (MQ=60)
GATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggaa < SRR4302535.3230716/94‑4 (MQ=60)
GATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggaa < SRR4302535.1253032/94‑4 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAG < SRR4302535.2667620/94‑1 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAG > SRR4302535.3196930/1‑94 (MQ=60)
TGAACGACGCGGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT < SRR4302535.3097308/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT > SRR4302535.985089/1‑94 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT < SRR4302535.3081714/94‑1 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGA < SRR4302535.3246209/94‑1 (MQ=60)
ACGACGCCGAGATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT < SRR4302535.454719/94‑1 (MQ=60)
ACGACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT < SRR4302535.1126090/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG > SRR4302535.917468/1‑94 (MQ=60)
GACGCCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302535.4471707/94‑1 (MQ=60)
ACGCCGAAATGCTCTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGG < SRR4302535.2697397/94‑1 (MQ=60)
CCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAC > SRR4302535.1400195/1‑94 (MQ=60)
CCGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAC > SRR4302535.4202139/1‑94 (MQ=60)
CGAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT < SRR4302535.2293395/94‑1 (MQ=60)
GAAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTA > SRR4302535.1820182/1‑94 (MQ=60)
AAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302535.2344464/1‑94 (MQ=60)
AAATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302535.3415029/1‑94 (MQ=60)
AATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT < SRR4302535.897072/94‑1 (MQ=60)
AATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT < SRR4302535.3058682/94‑1 (MQ=60)
AATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT > SRR4302535.2651406/1‑94 (MQ=60)
AATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAT < SRR4302535.3794835/94‑1 (MQ=60)
ATGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATG > SRR4302535.2122399/1‑94 (MQ=60)
TGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGC < SRR4302535.359317/94‑1 (MQ=60)
TGCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGC > SRR4302535.3046173/1‑94 (MQ=60)
GCTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGGGCACCAGCGTCTGAAAGACCTTCATACCGAGCTGGAAGGGATTGGTACTTATGCC > SRR4302535.3150404/1‑94 (MQ=57)
CTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302535.1474228/94‑1 (MQ=60)
CTGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302535.1702494/1‑94 (MQ=60)
TGTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGTAGTGATTGGTACTAATGCCGA > SRR4302535.926616/1‑94 (MQ=60)
GTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302535.3276858/94‑1 (MQ=60)
GTCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302535.2070629/94‑1 (MQ=60)
TCGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACG < SRR4302535.4645279/94‑1 (MQ=60)
CGATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGA < SRR4302535.380924/94‑1 (MQ=60)
GATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302535.2520935/94‑1 (MQ=60)
ATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCCCCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG < SRR4302535.685392/94‑1 (MQ=60)
ATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG < SRR4302535.3783146/94‑1 (MQ=60)
ATGGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG > SRR4302535.811241/1‑94 (MQ=60)
GGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG > SRR4302535.4131587/1‑94 (MQ=60)
GGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG > SRR4302535.1462804/1‑94 (MQ=60)
GGCGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG < SRR4302535.3247612/94‑1 (MQ=60)
gcggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGG < SRR4302535.1316714/84‑1 (MQ=60)
cggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGT < SRR4302535.801094/85‑1 (MQ=60)
cggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGT > SRR4302535.3756306/10‑94 (MQ=60)
cggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGT < SRR4302535.1236952/85‑1 (MQ=60)
cggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGG > SRR4302535.341000/10‑94 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTG < SRR4302535.3225069/86‑1 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTG < SRR4302535.3604091/86‑1 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTG < SRR4302535.4492088/86‑1 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCC > SRR4302535.3849761/1‑94 (MQ=60)
G‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCG > SRR4302535.3178349/1‑94 (MQ=60)
AAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCA > SRR4302535.3997677/1‑94 (MQ=60)
AAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCA > SRR4302535.941217/1‑94 (MQ=60)
G‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATT < SRR4302535.1830240/94‑1 (MQ=60)
G‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATT < SRR4302535.2366038/94‑1 (MQ=60)
GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTA < SRR4302535.2522363/94‑1 (MQ=60)
CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAT > SRR4302535.1065684/1‑94 (MQ=60)
CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAT < SRR4302535.3833812/94‑1 (MQ=60)
TGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCCTTATC > SRR4302535.2736397/1‑94 (MQ=60)
TGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATC > SRR4302535.624483/1‑94 (MQ=60)
TGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATC > SRR4302535.4142286/1‑94 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302535.4302279/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302535.1245631/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302535.745094/94‑1 (MQ=60)
ATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGC > SRR4302535.3893893/1‑94 (MQ=60)
TTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCG < SRR4302535.2502661/94‑1 (MQ=60)
TTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCG < SRR4302535.2299796/94‑1 (MQ=60)
TTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCG < SRR4302535.2217515/94‑1 (MQ=60)
TGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAA < SRR4302535.3239698/94‑1 (MQ=60)
TGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAA > SRR4302535.665689/1‑94 (MQ=60)
TGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAA > SRR4302535.2387404/1‑94 (MQ=60)
GGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAA > SRR4302535.3313448/1‑94 (MQ=60)
GGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAC < SRR4302535.3527387/94‑1 (MQ=60)
GGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAC < SRR4302535.715520/94‑1 (MQ=60)
GCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACT < SRR4302535.2423258/94‑1 (MQ=60)
GCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACT < SRR4302535.4400185/94‑1 (MQ=60)
AGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCT < SRR4302535.4028998/94‑1 (MQ=60)
AGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCT > SRR4302535.1720175/1‑94 (MQ=60)
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GCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCT > NC_000913/4008404‑4008579
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
