Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,032,327	A→G	Q44R (CAG→CGG)	hemG →	protoporphyrin oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,032,327	0	A	G	100.0%	717.6 / NA	226	Q44R (CAG→CGG)	hemG	protoporphyrin oxidase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/105); total (121/105)

Only 100 of 236 total aligned reads displayed.

CGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACAGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGCGTTCCAGGAATTTGTCAAAAAACATG  >  NC_000913/4032237‑4032416

cccgcgAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGt                                                                                         <  2:1225224/91‑1 (MQ=255)

 gcgcgAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTg                                                                                        <  2:647353/93‑1 (MQ=255)

     gagaTTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGaa                                                                                    >  1:383274/1‑93 (MQ=255)

       gaTTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGaaaa                                                                                  <  2:4445512/93‑1 (MQ=255)

       gaTTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGaaaa                                                                                  <  2:2330281/93‑1 (MQ=255)

        aTTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAAc                                                                                 >  2:3293796/1‑93 (MQ=255)

         ttGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACt                                                                                >  1:252255/1‑93 (MQ=255)

          tGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTa                                                                               <  2:1482556/93‑1 (MQ=255)

          tGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTa                                                                               <  1:1543020/93‑1 (MQ=255)

           gCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTAt                                                                              >  2:2424185/1‑93 (MQ=255)

            cctcctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATg                                                                             >  1:4493000/1‑93 (MQ=255)

              tcctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGAc                                                                           <  2:1738040/93‑1 (MQ=255)

              tcctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGAc                                                                           <  2:3395627/93‑1 (MQ=255)

              tcctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGAc                                                                           <  1:1945209/93‑1 (MQ=255)

                ctACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCg                                                                         >  1:1073582/1‑93 (MQ=255)

                 tACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGTATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCgt                                                                        >  1:1057230/1‑93 (MQ=255)

                 tACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCgt                                                                        >  1:2416867/1‑93 (MQ=255)

                   ccTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCgtgt                                                                      <  2:364831/93‑1 (MQ=255)

                   ccTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCgtgg                                                                      >  2:3698509/1‑92 (MQ=255)

                    cTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGtgtg                                                                     >  2:3104187/1‑93 (MQ=255)

                    cTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGtgtg                                                                     >  1:2454887/1‑93 (MQ=255)

                    cTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGtgtg                                                                     >  2:4318692/1‑93 (MQ=255)

                    cTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGtgtg                                                                     >  2:570442/1‑93 (MQ=255)

                     tGGCTTCGGAACTGAAAGAACTGGGGGTCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGATGGGAACACTATGACCGTGTgg                                                                    >  2:2993110/1‑93 (MQ=255)

                     tGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTgg                                                                    >  2:2045563/1‑93 (MQ=255)

                        cTTCGGAACTGAAAGAACTGGGGATCCAGCCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCa                                                                 <  1:1332365/93‑1 (MQ=255)

                         ttCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAt                                                                <  1:3532869/93‑1 (MQ=255)

                          tCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAtt                                                               <  2:1682466/93‑1 (MQ=255)

                          tCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAtt                                                               <  2:1083568/93‑1 (MQ=255)

                          tCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAtt                                                               >  1:872264/1‑93 (MQ=255)

                           cGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTg                                                              <  2:959229/93‑1 (MQ=255)

                           cGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTg                                                              >  1:655274/1‑93 (MQ=255)

                           cGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTg                                                              <  1:3122453/93‑1 (MQ=255)

                            ggAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTgg                                                             >  2:2633315/1‑93 (MQ=255)

                               aCTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGc                                                          >  1:4306712/1‑93 (MQ=255)

                                 tGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCtt                                                        >  1:916837/1‑93 (MQ=255)

                                   aaaGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCt                                                      <  2:4329704/93‑1 (MQ=255)

                                   aaaGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCt                                                      <  2:1028508/93‑1 (MQ=255)

                                       aaCTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTc                                                  >  1:803624/1‑93 (MQ=255)

                                        aCTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCg                                                 >  1:4075854/1‑93 (MQ=255)

                                          tGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCt                                               >  1:1245598/1‑93 (MQ=255)

                                           ggggATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTa                                              <  2:2547209/93‑1 (MQ=255)

                                            gggATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCGCGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTAt                                             <  1:3658435/93‑1 (MQ=255)

                                            gggATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTAt                                             <  1:4595131/93‑1 (MQ=255)

                                            gggATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTAt                                             <  1:3477937/93‑1 (MQ=255)

                                              gATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATgg                                           >  1:771418/1‑93 (MQ=255)

                                               aTCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGt                                          <  2:1406917/93‑1 (MQ=255)

                                                tCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTc                                         >  2:4241247/1‑93 (MQ=255)

                                                tCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTc                                         <  1:3370113/93‑1 (MQ=255)

                                                tCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTc                                         >  1:484146/1‑93 (MQ=255)

                                                 ccAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCa                                        <  1:418257/93‑1 (MQ=255)

                                                  cAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAc                                       >  1:4376669/1‑93 (MQ=255)

                                                  cAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAc                                       >  2:2035437/1‑93 (MQ=255)

                                                   aGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACt                                      <  2:4659942/93‑1 (MQ=255)

                                                    ggCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTa                                     >  1:972978/1‑93 (MQ=255)

                                                      cGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTAcc                                   >  1:2046140/1‑93 (MQ=255)

                                                        gATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAt                                 >  1:1102842/1‑93 (MQ=255)

                                                         aTGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAtt                                >  1:318273/1‑93 (MQ=255)

                                                         aTGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAtt                                >  1:4567622/1‑93 (MQ=255)

                                                         aTGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACCATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAtt                                <  1:4366474/93‑1 (MQ=255)

                                                           gTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCa                              <  1:1182601/93‑1 (MQ=255)

                                                           gTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCa                              <  1:1312924/93‑1 (MQ=255)

                                                            tCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAg                             <  1:1712404/93‑1 (MQ=255)

                                                             cGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgt                            <  1:2105388/93‑2 (MQ=255)

                                                              gCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgtg                           <  1:1598639/93‑3 (MQ=255)

                                                              gCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgtg                           >  1:2851337/1‑91 (MQ=255)

                                                               ccAATGTGCACCGCATTGAAGAACCACGGTGCGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAgtgt                          >  2:3757521/1‑93 (MQ=255)

                                                                cAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGtt                         >  1:1803905/1‑93 (MQ=255)

                                                                  aTGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTcc                       >  2:40147/1‑93 (MQ=255)

                                                                   tgtgCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCa                      <  2:181628/93‑1 (MQ=255)

                                                                   tgtgCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCa                      >  2:1297046/1‑93 (MQ=255)

                                                                   tgtgCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCa                      >  1:1412247/1‑93 (MQ=255)

                                                                    gtgCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAg                     <  1:724092/93‑1 (MQ=255)

                                                                      gCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGa                   >  2:2511139/1‑93 (MQ=255)

                                                                        aCCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAt                 >  1:3051941/1‑93 (MQ=255)

                                                                        aCCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAt                 >  1:2281919/1‑93 (MQ=255)

                                                                        aCCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAt                 <  1:1213768/93‑1 (MQ=255)

                                                                         ccGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAtt                <  2:4348685/93‑1 (MQ=255)

                                                                            cATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGt             >  2:1560394/1‑93 (MQ=255)

                                                                            cATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGt             >  2:3791050/1‑93 (MQ=255)

                                                                             aTTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTc            >  2:4275526/1‑93 (MQ=255)

                                                                             aTTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTc            <  2:4157664/93‑1 (MQ=255)

                                                                             aTTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTc            >  2:3575441/1‑93 (MQ=255)

                                                                             aTTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTc            <  2:321622/93‑1 (MQ=255)

                                                                              ttGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCa           >  1:2558929/1‑93 (MQ=255)

                                                                              ttGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCa           <  1:837911/93‑1 (MQ=255)

                                                                              ttGAAGAAACACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCa           >  1:2581406/1‑93 (MQ=255)

                                                                               tGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaa          >  2:3849250/1‑93 (MQ=255)

                                                                                gaagaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaa         >  1:3257770/1‑93 (MQ=255)

                                                                                gaagaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaa         >  2:2317089/1‑93 (MQ=255)

                                                                                 aagaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaa        <  1:2753573/93‑1 (MQ=255)

                                                                                 aagaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaa        >  1:2984071/1‑93 (MQ=255)

                                                                                  agaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaaa       >  1:2150193/1‑93 (MQ=255)

                                                                                  agaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaaa       <  2:1889425/93‑1 (MQ=255)

                                                                                  agaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaaa       >  2:4625607/1‑93 (MQ=255)

                                                                                   gaaCCACGGTGGGAAAACTATGACCGTGTGTTCATTGGTGCTTCTATTCTCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCaaaaaa      <  2:1632386/93‑1 (MQ=255)

                                                                                   gaaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGTATTTGTCaaaaaa      >  2:709948/1‑93 (MQ=255)

                                                                                    aaCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAAc     <  2:4057833/93‑1 (MQ=255)

                                                                                     aCCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACa    >  1:2907933/1‑93 (MQ=255)

                                                                                      ccACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACAt   <  2:91909/93‑1 (MQ=255)

CGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACAGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGCGTTCCAGGAATTTGTCAAAAAACATG  >  NC_000913/4032237‑4032416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAACGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACAGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGCGTTCCAGGAATTTGTCAAAAAACATGCGAC  >  NC_000913/4032234‑4032420

AAACGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACG                                                                                               >  SRR4302535.4375278/1‑94 (MQ=60)

AAACGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACG                                                                                               >  SRR4302535.1750219/1‑94 (MQ=60)

AAACGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACG                                                                                               <  SRR4302535.2324960/94‑1 (MQ=60)

  ACGCGCTAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGT                                                                                             <  SRR4302535.352914/94‑1 (MQ=60)

   CGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGCACTGGGGATCCAGCCGGATGTCGCCAATGTGCACCGCATTGACGAACCACAGTG                                                                                            >  SRR4302535.4601248/1‑94 (MQ=60)

   CGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTG                                                                                            <  SRR4302535.3311282/94‑1 (MQ=60)

     CGGGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGG                                                                                          <  SRR4302535.1593574/94‑1 (MQ=60)

     CGCGAGATTGCCGCCTACCTGTCTTCAGAACTGAAAGAACTGGGGATCTAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGG                                                                                          <  SRR4302535.4496925/94‑1 (MQ=60)

       CGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAA                                                                                        >  SRR4302535.385928/1‑94 (MQ=60)

         AGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAA                                                                                      >  SRR4302535.3677814/1‑94 (MQ=60)

         AGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAA                                                                                      <  SRR4302535.3226646/94‑1 (MQ=60)

         AGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAA                                                                                      >  SRR4302535.3113059/1‑94 (MQ=60)

         AGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAA                                                                                      <  SRR4302535.4288114/94‑1 (MQ=60)

          GATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAAC                                                                                     >  SRR4302535.965318/1‑94 (MQ=60)

           ATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACT                                                                                    >  SRR4302535.253992/1‑94 (MQ=60)

             TGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTAT                                                                                  <  SRR4302535.1554140/94‑1 (MQ=60)

             TGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAAACACGGTGGGAAAACTAT                                                                                  >  SRR4302535.816005/1‑94 (MQ=60)

              GCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATG                                                                                 >  SRR4302535.4523840/1‑94 (MQ=60)

              GCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATG                                                                                 <  SRR4302535.618602/94‑1 (MQ=60)

                CTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGAC                                                                               <  SRR4302535.3367132/94‑1 (MQ=60)

                 TCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACC                                                                              <  SRR4302535.689639/94‑1 (MQ=60)

                 TCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACC                                                                              <  SRR4302535.1959212/94‑1 (MQ=60)

                 TCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACC                                                                              <  SRR4302535.1260239/94‑1 (MQ=60)

                  CCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCG                                                                             >  SRR4302535.1081216/1‑94 (MQ=60)

                   CTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGTATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGT                                                                            >  SRR4302535.1064747/1‑94 (MQ=60)

                   CTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGT                                                                            >  SRR4302535.2434264/1‑94 (MQ=60)

                   CTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGT                                                                            >  SRR4302535.4547624/1‑94 (MQ=60)

                    TACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTG                                                                           <  SRR4302535.3429170/94‑1 (MQ=60)

                    TACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTG                                                                           >  SRR4302535.1335309/1‑94 (MQ=60)

                      CCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTG                                                                         >  SRR4302535.282766/1‑94 (MQ=60)

                      CCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTG                                                                         >  SRR4302535.2472587/1‑94 (MQ=60)

                         GGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTC                                                                      <  SRR4302535.1153210/94‑1 (MQ=60)

                         GGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTC                                                                      <  SRR4302535.2901740/94‑1 (MQ=60)

                         GGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTC                                                                      >  SRR4302535.779351/1‑94 (MQ=60)

                           CTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAT                                                                    >  SRR4302535.876036/1‑94 (MQ=60)

                           CTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAT                                                                    >  SRR4302535.3567787/1‑94 (MQ=60)

                           CTTCGGAACTGAAAGAACTGGGGATCCAGCCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCAT                                                                    <  SRR4302535.1341869/94‑1 (MQ=60)

                            TTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATT                                                                   >  SRR4302535.878444/1‑94 (MQ=60)

                            TTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATT                                                                   <  SRR4302535.1533717/94‑1 (MQ=60)

                            TTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATT                                                                   <  SRR4302535.3557396/94‑1 (MQ=60)

                             TCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTG                                                                  >  SRR4302535.659851/1‑94 (MQ=60)

                              CGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGG                                                                 <  SRR4302535.3144199/94‑1 (MQ=60)

                                GAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTG                                                               <  SRR4302535.856430/94‑1 (MQ=60)

                                 AACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGC                                                              >  SRR4302535.4336177/1‑94 (MQ=60)

                                 AACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGC                                                              >  SRR4302535.2894899/1‑94 (MQ=60)

                                 AACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGC                                                              >  SRR4302535.7729/1‑94 (MQ=60)

                                   CTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTT                                                            >  SRR4302535.923344/1‑94 (MQ=60)

                                   CTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTT                                                            >  SRR4302535.351133/1‑94 (MQ=60)

                                     GAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCT                                                          <  SRR4302535.1965860/94‑1 (MQ=60)

                                      AAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTA                                                         <  SRR4302535.2269002/94‑1 (MQ=60)

                                       AAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTAT                                                        <  SRR4302535.2583099/94‑1 (MQ=60)

                                         GAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTC                                                      >  SRR4302535.809267/1‑94 (MQ=60)

                                          AACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCG                                                     >  SRR4302535.4103740/1‑94 (MQ=60)

                                           ACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGC                                                    >  SRR4302535.2165247/1‑94 (MQ=60)

                                            CTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCT                                                   >  SRR4302535.1378128/1‑94 (MQ=60)

                                            CTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCT                                                   >  SRR4302535.1254487/1‑94 (MQ=60)

                                              GGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTAT                                                 <  SRR4302535.210872/94‑1 (MQ=60)

                                               GGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCGCGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATG                                                <  SRR4302535.3683760/94‑1 (MQ=60)

                                               GGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATG                                                <  SRR4302535.3502105/94‑1 (MQ=60)

                                               GGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATG                                                <  SRR4302535.2948944/94‑1 (MQ=60)

                                               GGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATG                                                <  SRR4302535.983235/94‑1 (MQ=60)

                                               GGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATG                                                <  SRR4302535.4626398/94‑1 (MQ=60)

                                                GGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGG                                               >  SRR4302535.776848/1‑94 (MQ=60)

                                                 GATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGT                                              >  SRR4302535.2415994/1‑94 (MQ=60)

                                                 GATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGT                                              <  SRR4302535.1807699/94‑1 (MQ=60)

                                                  GTCCAGGCTGATGTCGCAAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTC                                             <  SRR4302535.2605932/94‑1 (MQ=60)

                                                  ATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTC                                             >  SRR4302535.487539/1‑94 (MQ=60)

                                                   TCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCA                                            <  SRR4302535.3393560/94‑1 (MQ=60)

                                                   TCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCA                                            <  SRR4302535.3168517/94‑1 (MQ=60)

                                                    CCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAC                                           <  SRR4302535.421187/94‑1 (MQ=60)

                                                    CCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCAC                                           >  SRR4302535.4406615/1‑94 (MQ=60)

                                                      AGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTA                                         >  SRR4302535.1092262/1‑94 (MQ=60)

                                                      AGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTA                                         >  SRR4302535.979882/1‑94 (MQ=60)

                                                        GCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACC                                       <  SRR4302535.4118839/94‑1 (MQ=60)

                                                        GCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACC                                       >  SRR4302535.2060877/1‑94 (MQ=60)

                                                         CGGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCA                                      >  SRR4302535.785371/1‑94 (MQ=60)

                                                          GGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAT                                     >  SRR4302535.1110722/1‑94 (MQ=60)

                                                          GGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAT                                     >  SRR4302535.4402018/1‑94 (MQ=60)

                                                          GGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAT                                     <  SRR4302535.3111882/94‑1 (MQ=60)

                                                          GGATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCAT                                     >  SRR4302535.3903195/1‑94 (MQ=60)

                                                           GATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATT                                    >  SRR4302535.320480/1‑94 (MQ=60)

                                                           GATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATT                                    >  SRR4302535.1191143/1‑94 (MQ=60)

                                                           GATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATT                                    >  SRR4302535.4598777/1‑94 (MQ=60)

                                                            ATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTC                                   <  SRR4302535.1845058/94‑1 (MQ=60)

                                                            ATGTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACCATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTC                                   <  SRR4302535.4396354/94‑1 (MQ=60)

                                                              GTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAG                                 <  SRR4302535.1191047/94‑1 (MQ=60)

                                                              GTCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAG                                 <  SRR4302535.1322311/94‑1 (MQ=60)

                                                               TCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGT                                >  SRR4302535.4210316/1‑94 (MQ=60)

                                                               TCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGT                                <  SRR4302535.4362093/94‑1 (MQ=60)

                                                               TCGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGT                                <  SRR4302535.1724784/94‑1 (MQ=60)

                                                                CGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTG                               >  SRR4302535.2871543/1‑94 (MQ=60)

                                                                CGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTG                               <  SRR4302535.3729202/94‑1 (MQ=60)

                                                                CGCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTG                               <  SRR4302535.2120576/94‑1 (MQ=60)

                                                                 GCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGT                              >  SRR4302535.1774357/1‑94 (MQ=60)

                                                                 GCCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGT                              <  SRR4302535.1610168/94‑1 (MQ=60)

                                                                  CCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTT                             >  SRR4302535.1240481/1‑94 (MQ=60)

                                                                  CCAATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTT                             >  SRR4302535.1816942/1‑94 (MQ=60)

                                                                    AATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCC                           >  SRR4302535.2651316/1‑94 (MQ=60)

                                                                     ATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCA                          >  SRR4302535.4639905/1‑94 (MQ=60)

                                                                     ATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCA                          >  SRR4302535.1422330/1‑94 (MQ=60)

                                                                     ATGTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCA                          >  SRR4302535.2487975/1‑94 (MQ=60)

                                                                       GTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGG                        <  SRR4302535.729174/94‑1 (MQ=60)

                                                                       GTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGG                        <  SRR4302535.1074896/94‑1 (MQ=60)

                                                                       GTGCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGG                        <  SRR4302535.2574191/94‑1 (MQ=60)

                                                                         GCACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAA                      <  SRR4302535.1997864/94‑1 (MQ=60)

                                                                          CACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAT                     >  SRR4302535.3073317/1‑94 (MQ=60)

                                                                          CACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAT                     >  SRR4302535.2298220/1‑94 (MQ=60)

                                                                           ACCGCATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATT                    <  SRR4302535.1222473/94‑1 (MQ=60)

                                                                               CATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTC                <  SRR4302535.246317/94‑1 (MQ=60)

                                                                               CATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTC                >  SRR4302535.2472918/1‑94 (MQ=60)

                                                                                ATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCA               >  SRR4302535.1552920/1‑94 (MQ=60)

                                                                                ATTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCA               >  SRR4302535.2577349/1‑94 (MQ=60)

                                                                                ATTGAAGAAACACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCA               >  SRR4302535.2599950/1‑94 (MQ=60)

                                                                                 TTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAA              >  SRR4302535.1664838/1‑94 (MQ=60)

                                                                                 TTGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAA              <  SRR4302535.843794/94‑1 (MQ=60)

                                                                                  TGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCACA             >  SRR4302535.1319677/1‑94 (MQ=60)

                                                                                  TGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAA             >  SRR4302535.1183958/1‑94 (MQ=60)

                                                                                  TGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAA             >  SRR4302535.921791/1‑94 (MQ=60)

                                                                                  TGAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAA             >  SRR4302535.3280407/1‑94 (MQ=60)

                                                                                   GAAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAA            >  SRR4302535.3005003/1‑94 (MQ=60)

                                                                                    AAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAA           <  SRR4302535.2773195/94‑1 (MQ=60)

                                                                                    AAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAA           >  SRR4302535.2165655/1‑94 (MQ=60)

                                                                                    AAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAA           >  SRR4302535.62536/1‑94 (MQ=60)

                                                                                    AAGAACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAA           >  SRR4302535.3020507/1‑94 (MQ=60)

                                                                                       AACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACA        >  SRR4302535.2928486/1‑94 (MQ=60)

                                                                                        ACCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACAT       >  SRR4302535.4362522/1‑94 (MQ=60)

                                                                                         CCACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATG      >  SRR4302535.2230993/1‑94 (MQ=60)

                                                                                          CACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGC     >  SRR4302535.2176072/1‑94 (MQ=60)

                                                                                          CACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGC     <  SRR4302535.4538408/94‑1 (MQ=60)

                                                                                           ACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCG    <  SRR4302535.3867096/94‑1 (MQ=60)

                                                                                           ACGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCG    <  SRR4302535.1489179/94‑1 (MQ=60)

                                                                                            CGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCGA   <  SRR4302535.2814280/94‑1 (MQ=60)

                                                                                            CGGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCGA   <  SRR4302535.2082690/94‑1 (MQ=60)

                                                                                             GGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAATTTGTCAAAAAACATGCGAC  <  SRR4302535.2631011/94‑1 (MQ=60)

                                                                                             GGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGTGTTCCAGGAAATTGTCAAAAAACATGCGAC  >  SRR4302535.25964/1‑94 (MQ=60)

AAACGCGCGAGATTGCCTCCTACCTGGCTTCGGAACTGAAAGAACTGGGGATCCAGGCGGATGTCGCCAATGTGCACCGCATTGAAGAACCACAGTGGGAAAACTATGACCGTGTGGTCATTGGTGCTTCTATTCGCTATGGTCACTACCATTCAGCGTTCCAGGAATTTGTCAAAAAACATGCGAC  >  NC_000913/4032234‑4032420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`