Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,043,403	A→G	H260H (CAT→CAC)	yihG ←	putative endonuclease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,043,403	0	A	G	100.0%	846.1 / NA	262	H260H (CAT→CAC)	yihG	putative endonuclease
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (137/125); total (137/125)

Only 100 of 278 total aligned reads displayed.

TGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACATGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAG  >  NC_000913/4043313‑4043492

tGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCACCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTg                                                                                         <  2:1219028/93‑1 (MQ=255)

 gAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAGCTCATCGGCAATAGGCTGTAAATCCACgtgt                                                                                        <  2:2291747/93‑1 (MQ=255)

   gTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTAc                                                                                      >  1:3076099/1‑93 (MQ=255)

   gTTCAACCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGCAc                                                                                      >  2:1138673/1‑93 (MQ=255)

    ttCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACg                                                                                     >  1:4464895/1‑93 (MQ=255)

     tCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGa                                                                                    <  2:3226950/93‑1 (MQ=255)

     tCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGa                                                                                    <  1:3532528/93‑1 (MQ=255)

      cAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGAc                                                                                   <  2:3275817/93‑1 (MQ=255)

       aGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACa                                                                                  >  2:3615503/1‑93 (MQ=255)

        gCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACaa                                                                                 <  2:220070/93‑1 (MQ=255)

        gCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACaa                                                                                 >  1:263969/1‑93 (MQ=255)

         ccATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAt                                                                                >  1:652521/1‑93 (MQ=255)

          cATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATc                                                                               <  2:1976336/93‑1 (MQ=255)

           aTTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATcg                                                                              >  1:1695298/1‑92 (MQ=255)

           aTTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATcc                                                                              >  2:476075/1‑93 (MQ=255)

           aTTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATcc                                                                              >  2:762764/1‑93 (MQ=255)

            ttGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCcg                                                                             >  1:1866926/1‑93 (MQ=255)

             tGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCcgc                                                                            <  2:1750987/93‑1 (MQ=255)

             tGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCcgc                                                                            <  1:2285118/93‑1 (MQ=255)

             tGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCcgc                                                                            <  2:1051050/93‑1 (MQ=255)

               cTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGt                                                                          <  2:4203813/93‑1 (MQ=255)

               cTGAAAATGGCGCTTAAAACTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGt                                                                          <  2:3628686/93‑1 (MQ=255)

                 gAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCa                                                                        >  2:500376/1‑93 (MQ=255)

                   aaaTGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGt                                                                      >  1:1393968/1‑93 (MQ=255)

                     aTGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGttt                                                                    <  1:4376000/93‑1 (MQ=255)

                      tGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTa                                                                   >  1:2952455/1‑93 (MQ=255)

                           cTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCt                                                              >  1:2208618/1‑93 (MQ=255)

                           cTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCt                                                              >  1:3051998/1‑93 (MQ=255)

                           cTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCt                                                              <  2:3803432/93‑1 (MQ=255)

                            ttAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCtt                                                             >  1:2039476/1‑93 (MQ=255)

                            ttAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCtt                                                             >  1:1150770/1‑93 (MQ=255)

                              aaaGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTaa                                                           <  1:3112771/93‑1 (MQ=255)

                              aaaGCTTTTGTCATTGATGTAGCCGCCATGTAACTCATCTGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTaa                                                           <  2:4391700/93‑1 (MQ=255)

                               aaGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAc                                                          >  1:1745190/1‑93 (MQ=255)

                               aaGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAc                                                          >  1:4642979/1‑93 (MQ=255)

                                 gCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACat                                                        <  1:2552960/93‑1 (MQ=255)

                                  cTTTTGTCATTGATGTAGTGGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTCTACCGCTTAACata                                                       >  1:1642752/1‑93 (MQ=255)

                                  cTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACata                                                       >  2:4600600/1‑93 (MQ=255)

                                   ttttGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACatat                                                      <  1:710106/93‑1 (MQ=255)

                                    tttGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATc                                                     <  1:3905420/93‑1 (MQ=255)

                                     ttGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCg                                                    <  2:927202/93‑1 (MQ=255)

                                      tGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCga                                                   >  1:27853/1‑93 (MQ=255)

                                         cATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaaga                                                <  2:3954583/93‑1 (MQ=255)

                                         cATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaaga                                                <  1:608217/93‑1 (MQ=255)

                                         cATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaaca                                                <  2:2446724/93‑3 (MQ=255)

                                          aTTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaagaa                                               <  1:4152789/93‑1 (MQ=255)

                                          aTTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaagaa                                               >  2:2629581/1‑93 (MQ=255)

                                          aTTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaagaa                                               >  2:4433443/1‑93 (MQ=255)

                                          aTTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaagaa                                               >  1:243378/1‑93 (MQ=255)

                                           ttGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAc                                              <  1:1788305/93‑1 (MQ=255)

                                           ttGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAc                                              >  1:2695730/1‑93 (MQ=255)

                                            tGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACg                                             <  2:3696813/93‑1 (MQ=255)

                                            tGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACg                                             <  2:3449241/93‑1 (MQ=255)

                                             gATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACgg                                            >  1:2973186/1‑93 (MQ=255)

                                             gATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACgg                                            <  2:692608/93‑1 (MQ=255)

                                             gATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAACCGCGTCAGTTTACCGCTTAACATATCGAAGAACgg                                            >  2:3894086/1‑93 (MQ=255)

                                              aTGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGc                                           <  2:3864890/93‑1 (MQ=255)

                                              aTGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGc                                           <  1:2174418/93‑1 (MQ=255)

                                                 tAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGa                                        >  2:2122802/1‑93 (MQ=255)

                                                 tAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGa                                        >  1:4453403/1‑93 (MQ=255)

                                                  aGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGAc                                       <  1:1539717/93‑1 (MQ=255)

                                                  aGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGAc                                       >  2:1449204/1‑93 (MQ=255)

                                                   gTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACg                                      >  2:658131/1‑93 (MQ=255)

                                                   gTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACg                                      <  1:1078242/93‑1 (MQ=255)

                                                   gTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACg                                      <  2:4120461/93‑1 (MQ=255)

                                                   gTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACg                                      >  1:2852093/1‑93 (MQ=255)

                                                     cGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGt                                    <  1:1004492/93‑1 (MQ=255)

                                                      gCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACggct                                   >  1:3562337/1‑91 (MQ=255)

                                                       ccATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTa                                  >  2:1107879/1‑93 (MQ=255)

                                                       ccATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTa                                  >  1:3355001/1‑93 (MQ=255)

                                                        cATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAt                                 <  2:2047249/93‑1 (MQ=255)

                                                        cATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAt                                 >  1:1999255/1‑93 (MQ=255)

                                                         aTGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAtt                                >  1:125562/1‑93 (MQ=255)

                                                          tGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAttt                               >  2:3020090/1‑92 (MQ=255)

                                                             aaCTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTcc                            <  1:4059312/93‑1 (MQ=255)

                                                              aCTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCg                           >  2:682725/1‑93 (MQ=255)

                                                              aCTCATCGGCAAGAGGCTGTAAAACCACGTGTACGACAATCCGCGGCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTACg                           >  2:3782100/1‑93 (MQ=255)

                                                               cTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGGTATTGTCCgg                          >  2:206325/1‑93 (MQ=255)

                                                                tCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGa                         >  1:1442233/1‑93 (MQ=255)

                                                                  aTCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATa                       >  1:1380056/1‑93 (MQ=255)

                                                                    cGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGTCGGTTATTGTTCGGATAac                     <  2:4583846/93‑1 (MQ=255)

                                                                    cGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAac                     <  2:61105/93‑1 (MQ=255)

                                                                     ggCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAaca                    >  1:786797/1‑93 (MQ=255)

                                                                     ggCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAaca                    >  1:370984/1‑93 (MQ=255)

                                                                     gacAATAGGCTGTAAATCCACGTGTCCGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTACTGTCCGGATAaca                    <  2:4521413/91‑1 (MQ=255)

                                                                      gCAATAGGCTGTAAGTCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAacac                   <  1:1833090/93‑1 (MQ=255)

                                                                      gCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAacac                   <  1:3901044/93‑1 (MQ=255)

                                                                       cAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAAcaca                  <  1:1890273/93‑1 (MQ=255)

                                                                        aaTAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAg                 <  2:1531529/93‑1 (MQ=255)

                                                                         aTAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGc                <  2:3198442/93‑1 (MQ=255)

                                                                         aTAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGc                <  2:1831537/93‑1 (MQ=255)

                                                                         aTAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGc                <  2:4265133/93‑1 (MQ=255)

                                                                          tAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCg               >  1:4023630/1‑93 (MQ=255)

                                                                            ggCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTa             <  1:3611763/93‑1 (MQ=255)

                                                                              cTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAAc           <  1:1629069/93‑1 (MQ=255)

                                                                                gTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAt         <  1:2594097/93‑1 (MQ=255)

                                                                                gTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAt         <  1:3237170/93‑1 (MQ=255)

                                                                                   aaTCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTaa      <  1:3784505/93‑1 (MQ=255)

                                                                                     tCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAGTAAGc    >  2:1888068/1‑93 (MQ=255)

                                                                                       cacgTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAg  >  2:2814981/1‑93 (MQ=255)

TGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACATGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAG  >  NC_000913/4043313‑4043492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACATGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTTA  >  NC_000913/4043310‑4043496

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACG                                                                                               >  SRR4302535.689990/1‑94 (MQ=60)

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACG                                                                                               >  SRR4302535.3711805/1‑94 (MQ=60)

  ATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTG                                                                                             <  SRR4302535.3472525/94‑1 (MQ=60)

  ATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTG                                                                                             >  SRR4302535.3634914/1‑94 (MQ=60)

  ATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTG                                                                                             <  SRR4302535.2217368/94‑1 (MQ=60)

  ATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTG                                                                                             <  SRR4302535.245263/94‑1 (MQ=60)

  ATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTG                                                                                             <  SRR4302535.3757268/94‑1 (MQ=60)

   TGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGT                                                                                            >  SRR4302535.1588639/1‑94 (MQ=60)

   TGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGT                                                                                            <  SRR4302535.3276628/94‑1 (MQ=60)

     AGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTAC                                                                                          >  SRR4302535.3097560/1‑94 (MQ=60)

     AGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTAC                                                                                          >  SRR4302535.4159670/1‑94 (MQ=60)

      GTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACG                                                                                         >  SRR4302535.4495517/1‑94 (MQ=60)

      GTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACG                                                                                         >  SRR4302535.3663036/1‑94 (MQ=60)

        TCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGAC                                                                                       <  SRR4302535.3557054/94‑1 (MQ=60)

         CAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACA                                                                                      >  SRR4302535.2637048/1‑94 (MQ=60)

         CAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACA                                                                                      <  SRR4302535.4353191/94‑1 (MQ=60)

          AGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAA                                                                                     >  SRR4302535.3937935/1‑94 (MQ=60)

          AGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAA                                                                                     >  SRR4302535.265800/1‑94 (MQ=60)

           GCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAT                                                                                    >  SRR4302535.657071/1‑94 (MQ=60)

           GCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAT                                                                                    >  SRR4302535.3037053/1‑94 (MQ=60)

            CCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATC                                                                                   >  SRR4302535.3562771/1‑94 (MQ=60)

            CCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATC                                                                                   <  SRR4302535.2841159/94‑1 (MQ=60)

            CCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATC                                                                                   >  SRR4302535.4693634/1‑94 (MQ=60)

            CCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATC                                                                                   >  SRR4302535.2025530/1‑94 (MQ=60)

            CCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATC                                                                                   <  SRR4302535.263087/94‑1 (MQ=60)

             CATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCG                                                                                  >  SRR4302535.1707552/1‑94 (MQ=60)

             CATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCC                                                                                  <  SRR4302535.3729681/94‑1 (MQ=60)

             CATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCC                                                                                  >  SRR4302535.4063576/1‑94 (MQ=60)

             CATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCC                                                                                  >  SRR4302535.1729890/1‑94 (MQ=60)

             CATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCC                                                                                  >  SRR4302535.141812/1‑94 (MQ=60)

             CATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCC                                                                                  <  SRR4302535.2544926/94‑1 (MQ=60)

             CATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCC                                                                                  >  SRR4302535.2798661/1‑94 (MQ=60)

              ATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCG                                                                                 >  SRR4302535.1880379/1‑94 (MQ=60)

              ATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCG                                                                                 <  SRR4302535.1120652/94‑1 (MQ=60)

                TGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCG                                                                               <  SRR4302535.2301440/94‑1 (MQ=60)

                 GCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGT                                                                              >  SRR4302535.1422176/1‑94 (MQ=60)

                 GCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGT                                                                              <  SRR4302535.1911385/94‑1 (MQ=60)

                    GAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAG                                                                           >  SRR4302535.3217528/1‑94 (MQ=60)

                     AAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGT                                                                          >  SRR4302535.1403923/1‑94 (MQ=60)

                     AAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCACGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGT                                                                          <  SRR4302535.199453/94‑1 (MQ=60)

                        ATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTA                                                                       <  SRR4302535.4405941/94‑1 (MQ=60)

                        ATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTA                                                                       >  SRR4302535.2973196/1‑94 (MQ=60)

                           GCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCG                                                                    <  SRR4302535.29895/94‑1 (MQ=60)

                            CGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGC                                                                   >  SRR4302535.2788970/1‑94 (MQ=60)

                            CGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGC                                                                   >  SRR4302535.921886/1‑94 (MQ=60)

                             GCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCT                                                                  >  SRR4302535.3073374/1‑94 (MQ=60)

                             GCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCT                                                                  >  SRR4302535.2224348/1‑94 (MQ=60)

                              CTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTT                                                                 >  SRR4302535.1158989/1‑94 (MQ=60)

                              CTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTT                                                                 >  SRR4302535.2054163/1‑94 (MQ=60)

                               TTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTA                                                                <  SRR4302535.643913/94‑1 (MQ=60)

                                TAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAA                                                               <  SRR4302535.1644598/94‑1 (MQ=60)

                                TAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAA                                                               >  SRR4302535.4488418/1‑94 (MQ=60)

                                TAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAA                                                               >  SRR4302535.2676753/1‑94 (MQ=60)

                                 AAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAC                                                              <  SRR4302535.3134440/94‑1 (MQ=60)

                                 AAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAC                                                              >  SRR4302535.4674449/1‑94 (MQ=60)

                                 AAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAC                                                              >  SRR4302535.1757821/1‑94 (MQ=60)

                                 AAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAC                                                              <  SRR4302535.1235157/94‑1 (MQ=60)

                                  AAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACA                                                             >  SRR4302535.2453747/1‑94 (MQ=60)

                                   AGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACAT                                                            <  SRR4302535.3801205/94‑1 (MQ=60)

                                   AGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACAT                                                            >  SRR4302535.188148/1‑94 (MQ=60)

                                    GCTTTTGTCATTGATGTAGTGGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTCTACCGCTTAACATA                                                           >  SRR4302535.1654628/1‑94 (MQ=60)

                                    GCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATA                                                           >  SRR4302535.3020102/1‑94 (MQ=60)

                                    GCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATA                                                           <  SRR4302535.2571341/94‑1 (MQ=60)

                                     CTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATAT                                                          >  SRR4302535.1868545/1‑94 (MQ=60)

                                      TTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATC                                                         <  SRR4302535.715091/94‑1 (MQ=60)

                                       TTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCG                                                        <  SRR4302535.3932167/94‑1 (MQ=60)

                                        TTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGA                                                       >  SRR4302535.28074/1‑94 (MQ=60)

                                         TGACATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAA                                                      >  SRR4302535.1502435/1‑94 (MQ=60)

                                            CATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAA                                                   <  SRR4302535.3264723/94‑1 (MQ=60)

                                            CATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAA                                                   <  SRR4302535.612458/94‑1 (MQ=60)

                                            CATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAA                                                   >  SRR4302535.245045/1‑94 (MQ=60)

                                            CATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAA                                                   <  SRR4302535.2257486/94‑1 (MQ=60)

                                            CATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATAGAAGAA                                                   >  SRR4302535.1036704/1‑94 (MQ=60)

                                            CATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGGACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAA                                                   >  SRR4302535.1898309/1‑94 (MQ=60)

                                             ATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAC                                                  >  SRR4302535.2714996/1‑94 (MQ=60)

                                             ATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAC                                                  <  SRR4302535.4181224/94‑1 (MQ=60)

                                             ATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAC                                                  <  SRR4302535.719514/94‑1 (MQ=60)

                                             ATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAC                                                  <  SRR4302535.3080384/94‑1 (MQ=60)

                                             ATTGATGTAGTCGCCATGAAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAC                                                  <  SRR4302535.2193115/94‑1 (MQ=60)

                                              TTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACTACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACG                                                 <  SRR4302535.4439316/94‑1 (MQ=60)

                                              TTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACG                                                 <  SRR4302535.1801243/94‑1 (MQ=60)

                                              TTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACG                                                 <  SRR4302535.2421747/94‑1 (MQ=60)

                                               TGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGG                                                >  SRR4302535.2994056/1‑94 (MQ=60)

                                                GATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGC                                               >  SRR4302535.3585654/1‑94 (MQ=60)

                                                GATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGC                                               >  SRR4302535.3808758/1‑94 (MQ=60)

                                                 ATGTAGTCGCCATGTAACTGATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCT                                              <  SRR4302535.2913513/94‑1 (MQ=60)

                                                 ATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCT                                              <  SRR4302535.2189968/94‑1 (MQ=60)

                                                 ATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCT                                              >  SRR4302535.1644361/1‑94 (MQ=60)

                                                 ATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCT                                              <  SRR4302535.3206725/94‑1 (MQ=60)

                                                   GTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGA                                            <  SRR4302535.1340116/94‑1 (MQ=60)

                                                   GTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGA                                            >  SRR4302535.4483945/1‑94 (MQ=60)

                                                     AGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACG                                          <  SRR4302535.1550817/94‑1 (MQ=60)

                                                     AGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACG                                          >  SRR4302535.1791411/1‑94 (MQ=60)

                                                     AGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACG                                          >  SRR4302535.2872300/1‑94 (MQ=60)

                                                      GTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGG                                         <  SRR4302535.3888482/94‑1 (MQ=60)

                                                      GTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGG                                         <  SRR4302535.1085916/94‑1 (MQ=60)

                                                        CGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTT                                       <  SRR4302535.1011624/94‑1 (MQ=60)

                                                        CGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGCT                                       >  SRR4302535.3587037/1‑94 (MQ=60)

                                                         GCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTA                                      >  SRR4302535.3378362/1‑94 (MQ=60)

                                                         GCCATCTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTA                                      <  SRR4302535.1683050/94‑1 (MQ=60)

                                                          CCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAT                                     >  SRR4302535.2013656/1‑94 (MQ=60)

                                                           CATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATT                                    <  SRR4302535.699293/94‑1 (MQ=60)

                                                           CATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATT                                    >  SRR4302535.3835405/1‑94 (MQ=60)

                                                           CATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATT                                    >  SRR4302535.635634/1‑94 (MQ=60)

                                                           CATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATT                                    >  SRR4302535.126445/1‑94 (MQ=60)

                                                           CATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATT                                    <  SRR4302535.1613337/94‑1 (MQ=60)

                                                           CATGTAACTCATCGGCAATAGGCTGTAAATCCACGGGTACGACAATCCGCGTAAGTTTACCGCTTAACATATCGAAGAACGCCGGACGGTTATT                                    >  SRR4302535.498664/1‑94 (MQ=60)

                                                            ATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGTCGGTTATTG                                   >  SRR4302535.3938121/1‑94 (MQ=60)

                                                             TGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGT                                  >  SRR4302535.787193/1‑94 (MQ=60)

                                                               TAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCC                                <  SRR4302535.3931320/94‑1 (MQ=60)

                                                                AACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCG                               <  SRR4302535.4087095/94‑1 (MQ=60)

                                                                  CTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGA                             >  SRR4302535.3519274/1‑94 (MQ=60)

                                                                  CTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGA                             >  SRR4302535.1452552/1‑94 (MQ=60)

                                                                    CATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATA                           >  SRR4302535.1389899/1‑94 (MQ=60)

                                                                     ATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAA                          <  SRR4302535.2983876/94‑1 (MQ=60)

                                                                       CGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACA                        <  SRR4302535.1249433/94‑1 (MQ=60)

                                                                       CGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACA                        <  SRR4302535.2607463/94‑1 (MQ=60)

                                                                       CGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACA                        >  SRR4302535.792315/1‑94 (MQ=60)

                                                                       CGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACA                        >  SRR4302535.373550/1‑94 (MQ=60)

                                                                       CGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACA                        >  SRR4302535.409848/1‑94 (MQ=60)

                                                                        GGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACAC                       >  SRR4302535.2230629/1‑94 (MQ=60)

                                                                        GGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACAC                       >  SRR4302535.178121/1‑94 (MQ=60)

                                                                        GGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACAC                       <  SRR4302535.395372/94‑1 (MQ=60)

                                                                         GCAATAGGCTGTAAGTCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACA                      <  SRR4302535.1846317/94‑1 (MQ=60)

                                                                         GCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACA                      <  SRR4302535.1395473/94‑1 (MQ=60)

                                                                         GCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACA                      <  SRR4302535.3927765/94‑1 (MQ=60)

                                                                          CAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAG                     >  SRR4302535.1731482/1‑94 (MQ=60)

                                                                          CAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAG                     >  SRR4302535.2418416/1‑94 (MQ=60)

                                                                          CAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAG                     <  SRR4302535.1903889/94‑1 (MQ=60)

                                                                          CAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAG                     >  SRR4302535.2037163/1‑94 (MQ=60)

                                                                           AATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGC                    <  SRR4302535.3085375/94‑1 (MQ=60)

                                                                            ATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCG                   >  SRR4302535.4051159/1‑94 (MQ=60)

                                                                            ATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCG                   <  SRR4302535.1278715/94‑1 (MQ=60)

                                                                             TAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGT                  <  SRR4302535.499879/94‑1 (MQ=60)

                                                                             TAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGT                  >  SRR4302535.1119851/1‑94 (MQ=60)

                                                                              AGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTA                 <  SRR4302535.313328/94‑1 (MQ=60)

                                                                              AGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTA                 <  SRR4302535.4486207/94‑1 (MQ=60)

                                                                               GGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAA                <  SRR4302535.3636808/94‑1 (MQ=60)

                                                                                GCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAAC               <  SRR4302535.2846222/94‑1 (MQ=60)

                                                                                 CTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATTGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACA              <  SRR4302535.1507747/94‑1 (MQ=60)

                                                                                 CTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACA              >  SRR4302535.4570380/1‑94 (MQ=60)

                                                                                 CTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACA              >  SRR4302535.2686465/1‑94 (MQ=60)

                                                                                 CTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACA              <  SRR4302535.1640832/94‑1 (MQ=60)

                                                                                 CTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACA              <  SRR4302535.1804032/94‑1 (MQ=60)

                                                                                  TGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAT             <  SRR4302535.4067199/94‑1 (MQ=60)

                                                                                   GTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATT            <  SRR4302535.2612730/94‑1 (MQ=60)

                                                                                   GTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATT            <  SRR4302535.3379449/94‑1 (MQ=60)

                                                                                   GTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATT            <  SRR4302535.3259644/94‑1 (MQ=60)

                                                                                    TAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTA           <  SRR4302535.2173163/94‑1 (MQ=60)

                                                                                      AATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAG         <  SRR4302535.4662036/94‑1 (MQ=60)

                                                                                      AATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAG         <  SRR4302535.3810615/94‑1 (MQ=60)

                                                                                      AATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAG         <  SRR4302535.2097472/94‑1 (MQ=60)

                                                                                      AATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAG         <  SRR4302535.180696/94‑1 (MQ=60)

                                                                                         CCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAG      >  SRR4302535.4358913/1‑94 (MQ=60)

                                                                                          CACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAATAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGT     >  SRR4302535.216629/1‑94 (MQ=60)

                                                                                          CACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGT     >  SRR4302535.4584355/1‑94 (MQ=60)

                                                                                          CACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGGCCGGATAACACAGCGGAACATTAAGCAGT     >  SRR4302535.951896/1‑94 (MQ=60)

                                                                                           ACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTT    <  SRR4302535.3653751/94‑1 (MQ=60)

                                                                                            CGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTT   <  SRR4302535.179111/94‑1 (MQ=60)

                                                                                            CGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTT   >  SRR4302535.911766/1‑94 (MQ=60)

                                                                                            CGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTT   >  SRR4302535.4666512/1‑94 (MQ=60)

                                                                                             GTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTTA  <  SRR4302535.4068119/94‑1 (MQ=60)

                                                                                             GTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTACGGGTAACACAGCGTAACATTAAGCCGTTTA  >  SRR4302535.4115611/1‑94 (MQ=60)

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACATGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTTA  >  NC_000913/4043310‑4043496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`