Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,057,759 |
+C |
coding (1773/1776 nt) |
yihK → |
putative GTP‑binding factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,057,758 | 1 | . | C | 99.5%
| 701.4
/ ‑4.0
| 217 | coding (1772/1776 nt) | yihK | putative GTP‑binding factor |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (107/109); total (107/110) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 242 total aligned reads displayed.
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
tATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCa > 1:2261602/1‑93 (MQ=255)
tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑cc < 1:1209075/93‑2 (MQ=255)
tCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑cc > 1:1623061/1‑92 (MQ=255)
gCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑cctga < 1:4115668/93‑5 (MQ=255)
tGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACgg > 1:3378491/1‑93 (MQ=255)
gACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGa < 1:4663827/93‑1 (MQ=255)
aCTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGaa > 2:1070565/1‑93 (MQ=255)
aCTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGaa > 2:2962291/1‑93 (MQ=255)
ctctGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGaaa > 1:3149357/1‑93 (MQ=255)
tctGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGaaaa < 1:4630124/93‑1 (MQ=255)
ggAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGa > 1:1373949/1‑93 (MQ=255)
gAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGAt < 2:2772976/93‑1 (MQ=255)
gAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGAt < 1:4407296/93‑1 (MQ=255)
gAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGAt < 2:1275231/93‑1 (MQ=255)
aaCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGAtc > 2:3196123/1‑93 (MQ=255)
aaCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGAtc > 1:2649889/1‑93 (MQ=255)
aCAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGAtcg > 1:3673193/1‑93 (MQ=255)
aaGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGAtcgtc > 2:2036530/1‑93 (MQ=255)
aaGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGAtcgtc > 1:2974397/1‑93 (MQ=255)
gCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTcgc > 2:4250609/1‑93 (MQ=255)
tctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTcgccg > 1:3522980/1‑93 (MQ=255)
tctGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTcgccg > 2:1768772/1‑93 (MQ=255)
tGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGAGCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCcgcg > 1:3304419/1‑93 (MQ=255)
ggAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTGACCTGACGGAAAACGATCGTCGCCgcgc > 1:2381020/1‑93 (MQ=255)
ggAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCgcgc > 2:2422618/1‑93 (MQ=255)
ggAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGAAGGAAAACGATCGTCGCCgcgc > 2:623513/1‑93 (MQ=255)
gAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGcc < 2:395417/93‑1 (MQ=255)
gTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCaa > 1:2434270/1‑93 (MQ=255)
ttCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAAc > 1:129619/1‑93 (MQ=255)
tCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCAGCGCCAAcc > 1:601406/1‑93 (MQ=255)
aTCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACcgc > 2:4309326/1‑93 (MQ=255)
tCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACcgcg > 1:767511/1‑93 (MQ=255)
tCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACcgcg < 1:4278446/93‑1 (MQ=255)
tgatgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAcc > 2:3460010/1‑93 (MQ=255)
gatgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCg < 2:3749440/93‑1 (MQ=255)
gatgaCGAACTGGGAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCg > 2:812810/1‑93 (MQ=255)
tgaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaa > 2:3043487/1‑93 (MQ=255)
gaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaaa < 1:3951799/93‑1 (MQ=255)
gaCGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGaaa < 1:180724/93‑1 (MQ=255)
aCGAACTGGTAGAAGTGACTCCGGCCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAg < 2:1977059/93‑1 (MQ=255)
cGAACTGGTAGAAGTTACTCCGACCGCTATCCATATGCGTAAACGACACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGa < 2:3923097/93‑1 (MQ=255)
cGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGa < 1:4554804/93‑1 (MQ=255)
cGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGa < 1:2581610/93‑1 (MQ=255)
cGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGa < 2:4677225/93‑1 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 2:2599435/93‑1 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc > 1:1930283/1‑93 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 2:553840/93‑1 (MQ=255)
gAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAc < 1:1125285/93‑1 (MQ=255)
cTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAt < 2:2780812/93‑1 (MQ=255)
cTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAt < 1:3773064/93‑1 (MQ=255)
ggTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTa > 2:2513073/1‑93 (MQ=255)
ggTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTa > 1:1941808/1‑93 (MQ=255)
gTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTaa > 1:3630081/1‑93 (MQ=255)
tAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAt < 2:213933/93‑1 (MQ=255)
tAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAt < 1:1060890/93‑1 (MQ=255)
aGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAtt < 1:4330323/93‑1 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt < 1:2140554/93‑1 (MQ=255)
gAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAttt > 2:166696/1‑93 (MQ=255)
aGTGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCg > 2:771034/1‑93 (MQ=255)
gTGACTCCCACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGt < 2:4133036/93‑1 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 1:4257748/93‑1 (MQ=255)
tGACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtt < 2:1529969/93‑1 (MQ=255)
gACTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttt < 1:3432794/93‑1 (MQ=255)
ccTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt < 1:672217/92‑1 (MQ=255)
aCTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt > 1:4515810/1‑93 (MQ=255)
aCTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt < 1:3247128/93‑1 (MQ=255)
aCTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt > 2:2215584/1‑93 (MQ=255)
aCTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttt < 2:1187768/93‑1 (MQ=255)
cTCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGttttt < 2:2299166/93‑1 (MQ=255)
tCCGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGtttttt < 1:2026811/93‑1 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa < 1:2034152/93‑1 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa < 2:1904181/93‑1 (MQ=255)
ccGACCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTa < 2:1388613/93‑1 (MQ=255)
aCCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTc < 1:1027797/93‑1 (MQ=255)
aCCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTc < 1:3586704/93‑1 (MQ=255)
aCCTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTc < 1:2918841/93‑1 (MQ=255)
ccTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCa > 1:4044681/1‑93 (MQ=255)
ccTCTATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCa > 2:2749280/1‑93 (MQ=255)
ctctATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAt > 1:3717252/1‑93 (MQ=255)
ctctATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAt > 1:1489680/1‑93 (MQ=255)
tctATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATa > 2:2974478/1‑93 (MQ=255)
tATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa > 2:4518995/1‑93 (MQ=255)
tATCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaa < 2:3844791/93‑1 (MQ=255)
aTCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaa > 2:3136026/1‑93 (MQ=255)
aTCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaa < 2:4380167/93‑1 (MQ=255)
tCCGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaa > 1:2192051/1‑93 (MQ=255)
ccGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATaaaaaa < 2:1834362/93‑1 (MQ=255)
cGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc > 2:4171459/1‑93 (MQ=255)
cGTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAc > 2:448138/1‑93 (MQ=255)
gTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc < 1:85944/93‑1 (MQ=255)
gTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc < 1:3031544/93‑1 (MQ=255)
gTATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAAcc > 2:1971507/1‑93 (MQ=255)
tATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt > 1:1756431/1‑93 (MQ=255)
tATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt > 2:4538408/1‑93 (MQ=255)
tATTCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCt > 1:4354910/1‑93 (MQ=255)
ttCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGc < 1:990411/93‑1 (MQ=255)
ttCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGc < 2:2170101/93‑1 (MQ=255)
tCGTAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGcc < 1:2679117/93‑1 (MQ=255)
tAAACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGc > 2:3417032/1‑93 (MQ=255)
aCGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAt < 2:648316/93‑1 (MQ=255)
|
TATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGTCA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATG > NC_000913/4057666‑4057845
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057667‑4057852
|
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CC > SRR4302535.1634775/1‑94 (MQ=60)
TCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑Cct < SRR4302535.1217763/94‑3 (MQ=60)
CGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGA > SRR4302535.1950056/1‑94 (MQ=60)
GCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGAC < SRR4302535.1065862/94‑1 (MQ=60)
GCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGAC < SRR4302535.4143839/94‑1 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACG > SRR4302535.4537290/1‑94 (MQ=60)
CATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACAAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACG > SRR4302535.3830750/1‑94 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGG > SRR4302535.3401980/1‑94 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGG > SRR4302535.4377366/1‑94 (MQ=60)
ATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGG < SRR4302535.4304422/94‑1 (MQ=60)
GACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAA < SRR4302535.4695362/94‑1 (MQ=60)
ACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAA > SRR4302535.3171249/1‑94 (MQ=60)
CTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAA < SRR4302535.3547577/94‑1 (MQ=60)
TCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAAC < SRR4302535.4661542/94‑1 (MQ=60)
CTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACG > SRR4302535.2174557/1‑94 (MQ=60)
TGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGA > SRR4302535.1383768/1‑94 (MQ=60)
GGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGAT < SRR4302535.3756618/94‑1 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATC < SRR4302535.4437458/94‑1 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATC > SRR4302535.4605304/1‑94 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATC > SRR4302535.1985007/1‑94 (MQ=60)
GAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATC > SRR4302535.2668863/1‑94 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCG > SRR4302535.2601129/1‑94 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCG < SRR4302535.2693378/94‑1 (MQ=60)
AACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCG > SRR4302535.3698627/1‑94 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTC < SRR4302535.4128119/94‑1 (MQ=60)
CAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTC > SRR4302535.2995273/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCG > SRR4302535.1715151/1‑94 (MQ=60)
AAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCG < SRR4302535.680396/94‑1 (MQ=60)
AGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGC < SRR4302535.1611359/94‑1 (MQ=60)
AGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGC > SRR4302535.1996468/1‑94 (MQ=60)
AGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGC > SRR4302535.331416/1‑94 (MQ=60)
GCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCC < SRR4302535.3468774/94‑1 (MQ=60)
CTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCG > SRR4302535.3547446/1‑94 (MQ=60)
CTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGAGCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCG > SRR4302535.3327407/1‑94 (MQ=60)
CTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCG > SRR4302535.1330644/1‑94 (MQ=60)
CTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCG > SRR4302535.3427916/1‑94 (MQ=60)
TGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑GACCTGACGGAAAACGATCGTCGCCGCGC > SRR4302535.2398119/1‑94 (MQ=60)
AGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAA > SRR4302535.2451807/1‑94 (MQ=60)
GTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAC < SRR4302535.3711794/94‑1 (MQ=60)
GTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAAC > SRR4302535.130532/1‑94 (MQ=60)
TTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCAGCGCCAACC > SRR4302535.605613/1‑94 (MQ=60)
ATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCG > SRR4302535.772915/1‑94 (MQ=60)
TCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGC < SRR4302535.4307726/94‑1 (MQ=60)
TGATGACGAAGTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCG < SRR4302535.1107388/94‑1 (MQ=60)
ATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAA > SRR4302535.812853/1‑94 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302535.3978780/94‑1 (MQ=60)
GACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAG < SRR4302535.181980/94‑1 (MQ=60)
ACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGA < SRR4302535.3983817/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGGTTTCTATCCGTATTCGTAATCGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC < SRR4302535.3851179/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC < SRR4302535.4409841/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC < SRR4302535.2600157/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC < SRR4302535.4585917/94‑1 (MQ=60)
CGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGAC > SRR4302535.1944194/1‑94 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG < SRR4302535.1133319/94‑1 (MQ=60)
GAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACG < SRR4302535.3823310/94‑1 (MQ=60)
ACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGAT < SRR4302535.1266728/94‑1 (MQ=60)
CTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATT < SRR4302535.3799086/94‑1 (MQ=60)
TGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTA > SRR4302535.1955794/1‑94 (MQ=60)
GGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAA < SRR4302535.3232569/94‑1 (MQ=60)
GGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAA > SRR4302535.3655241/1‑94 (MQ=60)
GTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAAT < SRR4302535.466611/94‑1 (MQ=60)
TAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATT < SRR4302535.645342/94‑1 (MQ=60)
TAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATT < SRR4302535.1068442/94‑1 (MQ=60)
TAGAAGCGACCCCGACCTCTATCCGTATTCGTAAACGTCCC‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATT < SRR4302535.7574/94‑1 (MQ=60)
AGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTT < SRR4302535.4359937/94‑1 (MQ=60)
GAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTC < SRR4302535.2155964/94‑1 (MQ=60)
AAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCG > SRR4302535.2077143/1‑94 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT > SRR4302535.2661742/1‑94 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT > SRR4302535.1793417/1‑94 (MQ=60)
AGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGT < SRR4302535.1921588/94‑1 (MQ=60)
GTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTT < SRR4302535.3014664/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302535.4286916/94‑1 (MQ=60)
TGACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTT < SRR4302535.3347031/94‑1 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302535.4546770/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT > SRR4302535.1650748/1‑94 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT < SRR4302535.4359130/94‑1 (MQ=60)
GACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTT < SRR4302535.3456649/94‑1 (MQ=60)
CCTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT < SRR4302535.676908/94‑1 (MQ=60)
ACTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTT < SRR4302535.3269679/94‑1 (MQ=60)
CTCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTT > SRR4302535.3050454/1‑94 (MQ=60)
TCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTA < SRR4302535.2041414/94‑1 (MQ=60)
TCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTA > SRR4302535.1908159/1‑94 (MQ=60)
CCCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTA < SRR4302535.276542/94‑1 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302535.4554195/94‑1 (MQ=60)
CCGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAG < SRR4302535.2048808/94‑1 (MQ=60)
CGACCTCTATCCGTATTCTTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT < SRR4302535.4260050/94‑1 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT > SRR4302535.2165295/1‑94 (MQ=60)
CGACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGT < SRR4302535.4591116/94‑1 (MQ=60)
GACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTC > SRR4302535.1139646/1‑94 (MQ=60)
GACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTC > SRR4302535.4316919/1‑94 (MQ=60)
GACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTC < SRR4302535.3731757/94‑1 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA > SRR4302535.4072373/1‑94 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA < SRR4302535.2939439/94‑1 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA < SRR4302535.3611581/94‑1 (MQ=60)
ACCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCA < SRR4302535.1035097/94‑1 (MQ=60)
CCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAT > SRR4302535.1500371/1‑94 (MQ=60)
CCTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCAT > SRR4302535.3743007/1‑94 (MQ=60)
CTCTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATA < SRR4302535.3621302/94‑1 (MQ=60)
CTATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAA > SRR4302535.2947670/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302535.2422398/1‑94 (MQ=60)
ATCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAA > SRR4302535.2207649/1‑94 (MQ=60)
TCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTATTCATAAAAAA > SRR4302535.2222333/1‑94 (MQ=60)
TCCGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAA < SRR4302535.3310354/94‑1 (MQ=60)
CGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC > SRR4302535.1352157/1‑94 (MQ=60)
CGTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACC < SRR4302535.91283/94‑1 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT > SRR4302535.1769128/1‑94 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT > SRR4302535.4384720/1‑94 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT > SRR4302535.4399349/1‑94 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302535.3052768/94‑1 (MQ=60)
GTATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCT < SRR4302535.86548/94‑1 (MQ=60)
TATTGGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302535.2580696/94‑1 (MQ=60)
TATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302535.2356920/94‑1 (MQ=60)
TATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTG < SRR4302535.2048699/94‑1 (MQ=60)
ATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC > SRR4302535.4181638/1‑94 (MQ=60)
ATTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGC < SRR4302535.1390402/94‑1 (MQ=60)
TTCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCC < SRR4302535.997444/94‑1 (MQ=60)
TCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCA < SRR4302535.3443029/94‑1 (MQ=60)
TCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCA < SRR4302535.3572825/94‑1 (MQ=60)
TCGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCA < SRR4302535.2698285/94‑1 (MQ=60)
CGTAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAG > SRR4302535.3112459/1‑94 (MQ=60)
TAAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCG < SRR4302535.1177155/94‑1 (MQ=60)
AAACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGA > SRR4302535.550981/1‑94 (MQ=60)
AACGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGAT > SRR4302535.589925/1‑94 (MQ=60)
CGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG < SRR4302535.23242/94‑1 (MQ=60)
CGT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGG < SRR4302535.2821210/94‑1 (MQ=60)
GT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC < SRR4302535.1957689/94‑1 (MQ=60)
GT‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC > SRR4302535.168181/1‑94 (MQ=60)
GT‑CACCTGACGGAAAACGATCGACGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGC < SRR4302535.4576334/94‑1 (MQ=60)
T‑CACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCA < SRR4302535.2319306/94‑1 (MQ=60)
cacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG < SRR4302535.1385248/91‑1 (MQ=60)
cacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG > SRR4302535.890236/4‑94 (MQ=60)
cacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG > SRR4302535.3420643/4‑94 (MQ=60)
cacCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAG < SRR4302535.4488939/91‑1 (MQ=60)
acCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG < SRR4302535.1468481/92‑1 (MQ=60)
acCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG > SRR4302535.1541425/3‑94 (MQ=60)
C‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGT > SRR4302535.145302/1‑94 (MQ=60)
CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT < SRR4302535.3692342/94‑1 (MQ=60)
|
ATCCGCATGACTCTGGAACAAGCTCTGGAGTTCATCGATGATGACGAACTGGTAGAAGTGACTCCGACCTCTATCCGTATTCGTAAACGT‑CA‑CTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTT > NC_000913/4057667‑4057852
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
