Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,060,598	C→G	A258G (GCT→GGT)	yihN →	putative resistance protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,060,598	0	C	G	99.6%	722.7 / NA	233	A258G (GCT→GGT)	yihN	putative resistance protein
Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (124/108); minor base T (0/1); total (124/109)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 248 total aligned reads displayed.

TCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTA  >  NC_000913/4060508‑4060687

tcttctTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGtt                                                                                         >  2:2538079/1‑93 (MQ=255)

tcttctTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGtt                                                                                         >  1:2441316/1‑93 (MQ=255)

 cttcttCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTa                                                                                        <  2:2916335/93‑1 (MQ=255)

  ttcttcGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTAc                                                                                       >  1:1387977/1‑93 (MQ=255)

  ttcttcGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTAc                                                                                       >  1:4496076/1‑93 (MQ=255)

   tcttcGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACg                                                                                      >  2:3986385/1‑93 (MQ=255)

     ttcGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGc                                                                                    >  2:1250273/1‑93 (MQ=255)

      tcGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGca                                                                                   >  2:430296/1‑93 (MQ=255)

         tttACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGcatca                                                                                >  1:1130798/1‑93 (MQ=255)

           tACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCAtt                                                                              <  2:4090276/93‑1 (MQ=255)

           tACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCAtt                                                                              <  1:972423/93‑1 (MQ=255)

            aCGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTa                                                                             >  2:3619719/1‑93 (MQ=255)

            aCGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTa                                                                             <  2:2170969/93‑1 (MQ=255)

             cgcgGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTaa                                                                            >  1:1081355/1‑93 (MQ=255)

              gcgGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAAc                                                                           >  2:961763/1‑93 (MQ=255)

                 gTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCaa                                                                        >  1:3602738/1‑93 (MQ=255)

                 gTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCaa                                                                        >  2:1697333/1‑93 (MQ=255)

                    tACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATAc                                                                     <  1:4313959/93‑1 (MQ=255)

                     aCTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACt                                                                    <  1:2093181/93‑1 (MQ=255)

                     aCTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACt                                                                    <  1:4284374/93‑1 (MQ=255)

                     aCTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGATACGGCATCATTAACCAATACt                                                                    >  1:4665158/1‑93 (MQ=255)

                        gtgGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTc                                                                 <  1:1603486/93‑1 (MQ=255)

                        gtgGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTc                                                                 <  1:3474759/93‑1 (MQ=255)

                        gtgGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTc                                                                 <  1:648049/93‑1 (MQ=255)

                         tgGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCt                                                                <  1:2149475/93‑1 (MQ=255)

                         tgGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCt                                                                <  1:3957143/93‑1 (MQ=255)

                           gCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGa                                                              <  1:1475504/93‑1 (MQ=255)

                              tGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGaaaa                                                           >  2:1479570/1‑93 (MQ=255)

                              tGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGaaaa                                                           <  1:2756900/93‑1 (MQ=255)

                              tGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGaaaa                                                           >  1:406522/1‑93 (MQ=255)

                               gACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAAt                                                          >  2:1072274/1‑93 (MQ=255)

                                 cATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGa                                                        >  1:78159/1‑93 (MQ=255)

                                  aTTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGAt                                                       >  2:4366334/1‑93 (MQ=255)

                                   ttcttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGAtt                                                      >  2:175009/1‑93 (MQ=255)

                                   ttcttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGAtt                                                      >  1:1001163/1‑93 (MQ=255)

                                   ttcttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGAtt                                                      >  2:3076319/1‑93 (MQ=255)

                                   ttcttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGAtt                                                      >  2:3723741/1‑93 (MQ=255)

                                   ttcttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGAtt                                                      <  2:604689/93‑1 (MQ=255)

                                    tcttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATtg                                                     >  1:1499626/1‑93 (MQ=255)

                                     cttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATtgg                                                    <  1:1928322/93‑1 (MQ=255)

                                     cttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATtgg                                                    <  1:2271794/93‑1 (MQ=255)

                                     cttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATtgg                                                    <  1:2672137/93‑1 (MQ=255)

                                     cttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATtgg                                                    >  2:4563763/1‑93 (MQ=255)

                                      ttcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATtggt                                                   >  2:2397907/1‑93 (MQ=255)

                                       tcATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATtggtg                                                  <  2:444842/93‑1 (MQ=255)

                                         attccattccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGa                                                >  1:2966598/1‑93 (MQ=255)

                                         attccattccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGa                                                >  1:2583844/1‑93 (MQ=255)

                                          ttccattccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGAc                                               >  1:3529172/1‑93 (MQ=255)

                                           tccattccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGAcc                                              >  1:2197949/1‑93 (MQ=255)

                                             cattccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGa                                            >  2:764125/1‑93 (MQ=255)

                                             cattccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGa                                            >  1:559005/1‑93 (MQ=255)

                                             cattccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGa                                            <  1:1461876/93‑1 (MQ=255)

                                              attccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGAt                                           <  1:3083877/93‑1 (MQ=255)

                                               ttccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGAtt                                          >  1:121651/1‑93 (MQ=255)

                                               ttccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGAtt                                          <  1:2312865/93‑1 (MQ=255)

                                                tccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATtg                                         <  2:1764163/93‑1 (MQ=255)

                                                 ccTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATtgg                                        <  1:1533260/93‑1 (MQ=255)

                                                  cTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATtggt                                       <  1:3413654/93‑1 (MQ=255)

                                                  cTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATtggt                                       <  2:3567356/93‑1 (MQ=255)

                                                   tGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATtggtg                                      >  1:1980153/1‑93 (MQ=255)

                                                   tGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATtggtg                                      >  1:1276206/1‑93 (MQ=255)

                                                   tGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATtggtg                                      >  1:2180464/1‑93 (MQ=255)

                                                   tGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATtggtg                                      >  2:1980029/1‑93 (MQ=255)

                                                      aaaaCATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCa                                   >  1:2388060/1‑93 (MQ=255)

                                                       aaaCATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCAt                                  >  1:3701152/1‑93 (MQ=255)

                                                       aaaCATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCAt                                  >  2:476958/1‑93 (MQ=255)

                                                        aaCATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATg                                 >  2:3205013/1‑93 (MQ=255)

                                                         aCATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGa                                <  2:2499032/93‑1 (MQ=255)

                                                         aCATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGa                                <  1:2621307/93‑1 (MQ=255)

                                                         aCATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGa                                <  2:2297790/93‑1 (MQ=255)

                                                           atctatctATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGAtt                              >  1:372/1‑93 (MQ=255)

                                                           atctatctATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGAtt                              >  1:3129409/1‑93 (MQ=255)

                                                            tctatctaTTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGAttt                             >  1:4459569/1‑93 (MQ=255)

                                                             ctatctatTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTc                            <  2:1859957/93‑1 (MQ=255)

                                                             ctatctatTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTc                            <  2:310107/93‑1 (MQ=255)

                                                             ctatctatTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTc                            <  1:900828/93‑1 (MQ=255)

                                                              tatctatTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCa                           >  1:697621/1‑93 (MQ=255)

                                                               atctatTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAg                          >  1:38267/1‑93 (MQ=255)

                                                                  tatTGCGCGTTGGGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATa                       <  2:2672524/93‑1 (MQ=255)

                                                                  tatTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATa                       <  2:86767/93‑1 (MQ=255)

                                                                  tatTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATa                       <  1:1901570/93‑1 (MQ=255)

                                                                  tatTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATa                       <  1:1836769/93‑1 (MQ=255)

                                                                   atTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATaa                      <  2:3913728/93‑1 (MQ=255)

                                                                     tGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGa                    <  2:4034247/93‑1 (MQ=255)

                                                                     tGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGa                    <  2:4272491/93‑1 (MQ=255)

                                                                     tGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGa                    <  2:2735638/93‑1 (MQ=255)

                                                                     tGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGa                    <  2:733408/93‑1 (MQ=255)

                                                                      gCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGAt                   <  1:1238596/93‑1 (MQ=255)

                                                                      gCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGAt                   <  2:3439924/93‑1 (MQ=255)

                                                                      gCCCGTGGCGCTGGTGTGGGTTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGTTGGCATGATTTCAGATAAGAt                   <  2:262545/93‑1 (MQ=255)

                                                                       cccGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATc                  >  2:3883929/1‑93 (MQ=255)

                                                                         cGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCt                >  2:2097140/1‑93 (MQ=255)

                                                                          gTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTG‑AAATGATTGGTGGAGCGATTGGTGGCATGGTTTCAGATAAGATTCTGa              >  1:3254867/1‑93 (MQ=255)

                                                                            tGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGaa             <  1:1620831/93‑1 (MQ=255)

                                                                             gcgcTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGaaa            <  1:4046202/93‑1 (MQ=255)

                                                                                 tggtggGGGTTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGGCCGATTGGTGCCATGATTTCAGATACGATCCTGAAATCGc        <  2:280118/93‑1 (MQ=255)

                                                                                 tggtggGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGc        >  1:3204200/1‑93 (MQ=255)

                                                                                    tggGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCaa     <  2:575737/93‑1 (MQ=255)

                                                                                      ggggGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGt   >  2:1642136/1‑93 (MQ=255)

                                                                                       ggggTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTa  <  2:1117496/93‑1 (MQ=255)

TCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTA  >  NC_000913/4060508‑4060687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTAAATA  >  NC_000913/4060507‑4060691

GTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTT                                                                                             >  SRR4302535.2458903/1‑94 (MQ=60)

GTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTT                                                                                             >  SRR4302535.1529314/1‑94 (MQ=60)

 TCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGCAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTA                                                                                            >  SRR4302535.2345428/1‑94 (MQ=60)

  CTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTAC                                                                                           >  SRR4302535.4526942/1‑94 (MQ=60)

  CTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTAC                                                                                           >  SRR4302535.1397881/1‑94 (MQ=60)

  CCTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTAC                                                                                           <  SRR4302535.3681027/94‑1 (MQ=60)

   TTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACG                                                                                          <  SRR4302535.3102698/94‑1 (MQ=60)

   TTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACG                                                                                          >  SRR4302535.1261261/1‑94 (MQ=60)

       TCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCAT                                                                                      >  SRR4302535.3059270/1‑94 (MQ=60)

        CGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATC                                                                                     >  SRR4302535.2544566/1‑94 (MQ=60)

         GTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCA                                                                                    >  SRR4302535.1138870/1‑94 (MQ=60)

         GTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCA                                                                                    >  SRR4302535.4085828/1‑94 (MQ=60)

          TTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCAT                                                                                   <  SRR4302535.662241/94‑1 (MQ=60)

           TTACGCGGTTTACTGTGGCCTGACATTCTACATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTTCGGCATCATT                                                                                  <  SRR4302535.2332821/94‑1 (MQ=60)

            TACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTA                                                                                 <  SRR4302535.979320/94‑1 (MQ=60)

             ACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAA                                                                                >  SRR4302535.1089046/1‑94 (MQ=60)

              CGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAAC                                                                               <  SRR4302535.1472213/94‑1 (MQ=60)

              CGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAAC                                                                               <  SRR4302535.2007831/94‑1 (MQ=60)

              CGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAAC                                                                               <  SRR4302535.3604313/94‑1 (MQ=60)

              CGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAAC                                                                               >  SRR4302535.1182954/1‑94 (MQ=60)

              CGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGACCGTTGCGCTGGAGGAGGGCTACGGCATCATTAAC                                                                               >  SRR4302535.796809/1‑94 (MQ=60)

                CGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCA                                                                             <  SRR4302535.315793/94‑1 (MQ=60)

                 GGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAA                                                                            >  SRR4302535.3627738/1‑94 (MQ=60)

                  GTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAAT                                                                           >  SRR4302535.2144683/1‑94 (MQ=60)

                     TACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACT                                                                        <  SRR4302535.4343468/94‑1 (MQ=60)

                     TACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGATACGGCATCATTAACCAATACT                                                                        >  SRR4302535.4696697/1‑94 (MQ=60)

                      ACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTG                                                                       <  SRR4302535.2108267/94‑1 (MQ=60)

                      ACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTG                                                                       <  SRR4302535.4313684/94‑1 (MQ=60)

                        TGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTC                                                                     >  SRR4302535.1313607/1‑94 (MQ=60)

                         GTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCT                                                                    <  SRR4302535.652567/94‑1 (MQ=60)

                         GTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCT                                                                    <  SRR4302535.1615052/94‑1 (MQ=60)

                         GTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCT                                                                    <  SRR4302535.16131/94‑1 (MQ=60)

                         GTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCT                                                                    <  SRR4302535.3498902/94‑1 (MQ=60)

                          TGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTG                                                                   <  SRR4302535.3984159/94‑1 (MQ=60)

                          TGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTG                                                                   <  SRR4302535.2164935/94‑1 (MQ=60)

                          TGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTG                                                                   <  SRR4302535.2164934/94‑1 (MQ=60)

                          TGGCCTGACATTCATCATTCCATTCCTGAAACACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTG                                                                   <  SRR4302535.1232624/94‑1 (MQ=60)

                           GGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGA                                                                  >  SRR4302535.355075/1‑94 (MQ=60)

                           GGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGA                                                                  >  SRR4302535.2752395/1‑94 (MQ=60)

                            GCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAA                                                                 <  SRR4302535.1486069/94‑1 (MQ=60)

                              CTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAA                                                               >  SRR4302535.409369/1‑94 (MQ=60)

                               TGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAAT                                                              <  SRR4302535.2776548/94‑1 (MQ=60)

                                GACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATG                                                             <  SRR4302535.1455425/94‑1 (MQ=60)

                                GACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATG                                                             <  SRR4302535.4373443/94‑1 (MQ=60)

                                 ACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGA                                                            >  SRR4302535.3240685/1‑94 (MQ=60)

                                 ACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGA                                                            >  SRR4302535.78720/1‑94 (MQ=60)

                                 ACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGA                                                            >  SRR4302535.108324/1‑94 (MQ=60)

                                   ATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATT                                                          >  SRR4302535.1008277/1‑94 (MQ=60)

                                   ATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATT                                                          >  SRR4302535.505646/1‑94 (MQ=60)

                                    TTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTG                                                         >  SRR4302535.1510414/1‑94 (MQ=60)

                                     TCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGG                                                        <  SRR4302535.2690538/94‑1 (MQ=60)

                                      CTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGT                                                       <  SRR4302535.1942219/94‑1 (MQ=60)

                                      CTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGT                                                       <  SRR4302535.2691253/94‑1 (MQ=60)

                                      CTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGT                                                       <  SRR4302535.2287996/94‑1 (MQ=60)

                                       TTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTG                                                      <  SRR4302535.2635200/94‑1 (MQ=60)

                                       TTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTG                                                      <  SRR4302535.3137113/94‑1 (MQ=60)

                                         CATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGA                                                    >  SRR4302535.3511715/1‑94 (MQ=60)

                                         CATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGA                                                    >  SRR4302535.2602406/1‑94 (MQ=60)

                                         CATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGA                                                    >  SRR4302535.2987411/1‑94 (MQ=60)

                                          ATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGAC                                                   >  SRR4302535.1560703/1‑94 (MQ=60)

                                          ATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGAC                                                   <  SRR4302535.2812435/94‑1 (MQ=60)

                                          ATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGAC                                                   >  SRR4302535.3553679/1‑94 (MQ=60)

                                           TTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACC                                                  <  SRR4302535.3728707/94‑1 (MQ=60)

                                           TTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACC                                                  >  SRR4302535.2213611/1‑94 (MQ=60)

                                           TTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACC                                                  <  SRR4302535.1821114/94‑1 (MQ=60)

                                           TTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTAGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACC                                                  <  SRR4302535.2706020/94‑1 (MQ=60)

                                             CCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGA                                                >  SRR4302535.1916982/1‑94 (MQ=60)

                                             CCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGA                                                >  SRR4302535.562912/1‑94 (MQ=60)

                                             CCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGA                                                >  SRR4302535.4194791/1‑94 (MQ=60)

                                              CATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGAT                                               <  SRR4302535.1472351/94‑1 (MQ=60)

                                               ATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATT                                              <  SRR4302535.1898259/94‑1 (MQ=60)

                                               ATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATT                                              >  SRR4302535.122503/1‑94 (MQ=60)

                                               ATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATT                                              <  SRR4302535.3105365/94‑1 (MQ=60)

                                                TTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTG                                             <  SRR4302535.2329418/94‑1 (MQ=60)

                                                TTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTG                                             <  SRR4302535.747430/94‑1 (MQ=60)

                                                 TCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGG                                            >  SRR4302535.1936378/1‑94 (MQ=60)

                                                  CCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGT                                           <  SRR4302535.1544308/94‑1 (MQ=60)

                                                   CTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTG                                          >  SRR4302535.2196025/1‑94 (MQ=60)

                                                   CTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTG                                          <  SRR4302535.3437405/94‑1 (MQ=60)

                                                   CTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTG                                          >  SRR4302535.1994408/1‑94 (MQ=60)

                                                   CTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTG                                          >  SRR4302535.2280401/1‑94 (MQ=60)

                                                   CTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTG                                          >  SRR4302535.1285315/1‑94 (MQ=60)

                                                    TGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGG                                         >  SRR4302535.1489882/1‑94 (MQ=60)

                                                      AAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCA                                       >  SRR4302535.2405228/1‑94 (MQ=60)

                                                      AAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGGTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCA                                       >  SRR4302535.4508477/1‑94 (MQ=60)

                                                       AAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCAT                                      >  SRR4302535.3726786/1‑94 (MQ=60)

                                                          ACATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGAT                                   <  SRR4302535.2640101/94‑1 (MQ=60)

                                                           CATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATT                                  >  SRR4302535.377/1‑94 (MQ=60)

                                                           CATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATT                                  <  SRR4302535.1691475/94‑1 (MQ=60)

                                                           CATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATT                                  >  SRR4302535.3151205/1‑94 (MQ=60)

                                                            ATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTT                                 <  SRR4302535.3709338/94‑1 (MQ=60)

                                                            ATCTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTT                                 >  SRR4302535.4490155/1‑94 (MQ=60)

                                                              CTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCA                               >  SRR4302535.3439104/1‑94 (MQ=60)

                                                              CTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCA                               <  SRR4302535.907206/94‑1 (MQ=60)

                                                              CTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCA                               >  SRR4302535.702518/1‑94 (MQ=60)

                                                              CTATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGATGGAGCGATTGGCGGCATGATTTCA                               >  SRR4302535.2311881/1‑94 (MQ=60)

                                                               TATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAG                              >  SRR4302535.937852/1‑94 (MQ=60)

                                                               TATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAG                              >  SRR4302535.3213608/1‑94 (MQ=60)

                                                               TATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAG                              <  SRR4302535.1622506/94‑1 (MQ=60)

                                                               TATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAG                              >  SRR4302535.38563/1‑94 (MQ=60)

                                                                ATCTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGA                             >  SRR4302535.120518/1‑94 (MQ=60)

                                                                 TCTATCGCGCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGAT                            <  SRR4302535.630062/94‑1 (MQ=60)

                                                                  CTATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATA                           >  SRR4302535.1948218/1‑94 (MQ=60)

                                                                   TATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAA                          <  SRR4302535.1915257/94‑1 (MQ=60)

                                                                   TATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAA                          <  SRR4302535.1850020/94‑1 (MQ=60)

                                                                    ATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAG                         <  SRR4302535.1251614/94‑1 (MQ=60)

                                                                    ATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAG                         >  SRR4302535.4179675/1‑94 (MQ=60)

                                                                    ATTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAG                         >  SRR4302535.1492667/1‑94 (MQ=60)

                                                                     TTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGA                        <  SRR4302535.1480905/94‑1 (MQ=60)

                                                                     TTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGA                        >  SRR4302535.1118592/1‑94 (MQ=60)

                                                                     TTGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGA                        <  SRR4302535.3762100/94‑1 (MQ=60)

                                                                      TGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGAT                       <  SRR4302535.2283072/94‑1 (MQ=60)

                                                                      TGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGAT                       <  SRR4302535.4615003/94‑1 (MQ=60)

                                                                      TGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGAT                       <  SRR4302535.403517/94‑1 (MQ=60)

                                                                      TGCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGAT                       <  SRR4302535.3994576/94‑1 (MQ=60)

                                                                       GCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATC                      >  SRR4302535.2097446/1‑94 (MQ=60)

                                                                       GCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATC                      <  SRR4302535.1247441/94‑1 (MQ=60)

                                                                       GCCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATC                      <  SRR4302535.3282103/94‑1 (MQ=60)

                                                                        CCCGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCC                     >  SRR4302535.3815376/1‑94 (MQ=60)

                                                                         CTGTTGCTCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCT                    <  SRR4302535.2414668/94‑1 (MQ=60)

                                                                          CGTTGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTG‑AAATGATTGGTGGAGCGATTGGTGGCATGGTTTCAGATAAGATTCTGA                  >  SRR4302535.3277481/1‑94 (MQ=60)

                                                                             TGCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAA                <  SRR4302535.1632525/94‑1 (MQ=60)

                                                                              GCGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAAT               <  SRR4302535.4073900/94‑1 (MQ=60)

                                                                               CGCTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATC              <  SRR4302535.4610976/94‑1 (MQ=60)

                                                                                 CTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGC            >  SRR4302535.2565840/1‑94 (MQ=60)

                                                                                 CTGGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGC            >  SRR4302535.3226390/1‑94 (MQ=60)

                                                                                   GGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCA          >  SRR4302535.583177/1‑94 (MQ=60)

                                                                                   GGTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCA          <  SRR4302535.4468979/94‑1 (MQ=60)

                                                                                    GTGGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAA         >  SRR4302535.3891554/1‑94 (MQ=60)

                                                                                      GGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGT       <  SRR4302535.4333828/94‑1 (MQ=60)

                                                                                      GGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGT       <  SRR4302535.827578/94‑1 (MQ=60)

                                                                                      GGGGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGT       <  SRR4302535.2207032/94‑1 (MQ=60)

                                                                                        GGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTAA     <  SRR4302535.3336330/94‑1 (MQ=60)

                                                                                        GGGGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTAA     <  SRR4302535.2185044/94‑1 (MQ=60)

                                                                                          GGTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTAAAT   >  SRR4302535.2886211/1‑94 (MQ=60)

                                                                                           GTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTAAATA  <  SRR4302535.1030095/94‑1 (MQ=60)

GTCTTCTTCGTTTACGCGGTTTACTGTGGCCTGACATTCTTCATTCCATTCCTGAAAAACATCTATCTATTGCCCGTTGCGCTGGTGGGGGCTTACGGCATCATTAACCAATACTGTCTGAAAATGATTGGTGGACCGATTGGTGGCATGATTTCAGATAAGATCCTGAAATCGCCAAGTAAATA  >  NC_000913/4060507‑4060691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`