Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,069,008 |
C→T |
G110D (GGC→GAC) |
yihS ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,069,008 | 0 | C | T | 99.6%
| 781.3
/ ‑5.8
| 228 | G110D (GGC→GAC) | yihS | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (116/110); total (117/111) |
| Fisher's exact test for biased strand distribution p-value = 4.89e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.29e-01 |
Only 100 of 249 total aligned reads displayed.
TTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCT > NC_000913/4068916‑4069097
|
tttCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGATGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGc > 1:4614269/1‑93 (MQ=255)
tCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGtcc > 1:3509758/1‑93 (MQ=255)
tCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGtcc < 1:188582/93‑1 (MQ=255)
cAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCt < 1:397302/93‑1 (MQ=255)
aTGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGt > 1:3278188/1‑93 (MQ=255)
tGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCCAAGAAGTGTTGATAGTCCTGtt > 2:124647/1‑93 (MQ=255)
ggTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGttt > 1:2025301/1‑93 (MQ=255)
tgtAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTgg > 2:4270385/1‑93 (MQ=255)
tAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAg < 1:2272448/93‑1 (MQ=255)
tAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAg < 2:3732945/93‑1 (MQ=255)
aaTCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAgg > 1:588236/1‑93 (MQ=255)
aaTCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAgg > 2:2815420/1‑93 (MQ=255)
aTCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGc > 1:2082828/1‑93 (MQ=255)
aTCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGc < 1:319099/93‑1 (MQ=255)
aTCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGc > 2:3523283/1‑93 (MQ=255)
aTCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGc < 2:112059/93‑1 (MQ=255)
aTCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGc < 2:533554/93‑1 (MQ=255)
tCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCa < 2:4227442/93‑1 (MQ=255)
tCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCa > 1:4606420/1‑93 (MQ=255)
cGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGGGTTGATAGTCCTGTTTGGAGGCAt > 2:2931880/1‑93 (MQ=255)
agcagcTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGGGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATcc > 1:2008756/1‑93 (MQ=255)
agcagcTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATcc < 1:1390703/93‑1 (MQ=255)
agcTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATccacc < 1:2619429/93‑1 (MQ=255)
gcTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATccaccc > 1:1044277/1‑92 (MQ=255)
gcTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATccacca < 1:912059/93‑1 (MQ=255)
gcTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATccacca > 1:3566127/1‑93 (MQ=255)
gcTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATccacca > 1:1319211/1‑93 (MQ=255)
gcTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATccacca > 2:3277906/1‑93 (MQ=255)
ttGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACg > 1:2533096/1‑93 (MQ=255)
ttGCGCGCTTCCGGGTGACCCGTTGTGAAGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGGTTAGAGGAATCAACCACg > 2:2014629/1‑93 (MQ=255)
tGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGc < 2:2521837/93‑1 (MQ=255)
ccgcTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCt < 2:4342900/92‑1 (MQ=255)
ttCCGGGTGACCCGTTGTGACGGCGCTGGCGGCATCCAGCAGAGCAAAGAAGCGTTGATAGTCCTGTTTGGATGCATCCACCACGCCCTCGta > 2:2304365/1‑92 (MQ=255)
ttCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTc < 2:1641949/93‑1 (MQ=255)
gggTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTc < 2:3133416/93‑1 (MQ=255)
gggTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTc < 2:2885974/93‑1 (MQ=255)
ggTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCa < 1:372088/93‑1 (MQ=255)
ggTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCa > 2:4403574/1‑93 (MQ=255)
gTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCAc > 2:1451942/1‑93 (MQ=255)
gTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCAc < 1:521133/93‑1 (MQ=255)
tGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACg > 1:1000168/1‑93 (MQ=255)
gACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc < 1:4292936/93‑1 (MQ=255)
aCCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa < 1:282167/93‑1 (MQ=255)
aCCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGGCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCa > 1:2213211/1‑93 (MQ=255)
ccGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAgg < 2:3962932/93‑1 (MQ=255)
gTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCa > 2:3031047/1‑93 (MQ=255)
gTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCa < 1:930280/93‑1 (MQ=255)
ttGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAt > 1:4152521/1‑93 (MQ=255)
ttGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAt > 2:700310/1‑93 (MQ=255)
gtgtgACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAt < 1:1677088/92‑1 (MQ=255)
tgACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAcc < 1:1445809/93‑1 (MQ=255)
gACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa < 2:3477825/93‑1 (MQ=255)
gACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa > 2:4131470/1‑93 (MQ=255)
gACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa < 2:1872224/93‑1 (MQ=255)
aCGGCGCTGGCGGCCCCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAg < 2:2277603/93‑1 (MQ=255)
gcTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAgccgcc < 1:1142898/93‑1 (MQ=255)
cTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCa < 1:4474771/93‑1 (MQ=255)
cTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCa > 1:692336/1‑93 (MQ=255)
ggcggcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCata < 2:1579698/93‑1 (MQ=255)
ggcggcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCata < 2:347046/93‑1 (MQ=255)
ggcggcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCata < 2:843165/93‑1 (MQ=255)
ggcggcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCata > 1:313636/1‑93 (MQ=255)
ggcggcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCata > 1:3768472/1‑93 (MQ=255)
gcggcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCatat < 1:3081075/93‑1 (MQ=255)
gcggcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCatat < 1:845943/93‑1 (MQ=255)
gcggcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCatat < 2:2194328/93‑1 (MQ=255)
cggcCCCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATAtt < 2:4547547/93‑1 (MQ=255)
gcACCCAGCAGAGCAAATAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATAtttt < 2:272411/93‑1 (MQ=255)
gcACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATAtttt < 2:2708254/93‑1 (MQ=255)
cACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATAttttt > 2:759455/1‑93 (MQ=255)
cccAGCAGAGCAAAGAGGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTa < 1:2373127/93‑1 (MQ=255)
cagcagAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATc < 1:3623958/93‑1 (MQ=255)
cagcagAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATc < 1:3922748/93‑1 (MQ=255)
agcagAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCa < 1:1158776/93‑1 (MQ=255)
gcagAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCAc > 2:2047784/1‑93 (MQ=255)
gcagAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCAc > 1:791366/1‑93 (MQ=255)
cagAGCAAAGAAGTGTTGATAGTCCTGTTGGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACg < 2:3240499/93‑1 (MQ=255)
agagCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGc > 1:2898765/1‑93 (MQ=255)
agagCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGc < 1:2742096/93‑1 (MQ=255)
gagCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCa < 2:2379244/93‑1 (MQ=255)
gCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGt > 2:898470/1‑93 (MQ=255)
gCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGt < 1:4214050/93‑1 (MQ=255)
gCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTAGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGt < 2:3820893/93‑1 (MQ=255)
cAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTg < 1:2132636/93‑1 (MQ=255)
cAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTAGCACGCAGTg > 2:3632514/1‑93 (MQ=255)
aaaGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTgc < 1:4376450/93‑1 (MQ=255)
aaaGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTgc < 2:2337285/93‑1 (MQ=255)
aagaagTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTgcg < 2:626682/93‑1 (MQ=255)
aagaagTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTgcg > 1:352951/1‑93 (MQ=255)
gaagTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGcc > 2:3756724/1‑93 (MQ=255)
gaagTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGGCATTCACGCAGGCATAGCAGCCGCCATATTTTTTATCACGCAGTGCGcc > 2:3660662/1‑93 (MQ=255)
gtgtTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGtt > 2:3564533/1‑93 (MQ=255)
gtgtTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGtt > 1:1877624/1‑93 (MQ=255)
gtTGATAGTCCTGTTTGGAGGCATCCACCTCGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCa < 2:383220/93‑1 (MQ=255)
gtTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCa > 2:2944447/1‑93 (MQ=255)
tGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATg > 1:565852/1‑93 (MQ=255)
aTAGTCCTGTTTGGAGGCATCCACCACGCCTTCGTCATTCACGCAGCCATCCCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGc < 2:4594580/93‑1 (MQ=255)
aTAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATCCCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGc < 2:1869169/93‑1 (MQ=255)
aTAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGc < 1:1504890/93‑1 (MQ=255)
aTAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGc < 1:4534628/93‑1 (MQ=255)
|
TTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCT > NC_000913/4068916‑4069097
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTG > NC_000913/4068915‑4069100
|
ATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGATGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGC > SRR4302535.4645620/1‑94 (MQ=60)
ATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGT > SRR4302535.2077290/1‑94 (MQ=60)
ATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGT < SRR4302535.1420069/94‑1 (MQ=60)
ATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGT > SRR4302535.3552734/1‑94 (MQ=60)
ATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGT < SRR4302535.3676601/94‑1 (MQ=60)
TTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCC > SRR4302535.3534148/1‑94 (MQ=60)
TTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCC < SRR4302535.2864397/94‑1 (MQ=60)
TCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCT < SRR4302535.189887/94‑1 (MQ=60)
TCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCT < SRR4302535.3866772/94‑1 (MQ=60)
CAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTG < SRR4302535.400087/94‑1 (MQ=60)
AATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGT > SRR4302535.2527723/1‑94 (MQ=60)
AATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGT < SRR4302535.2786895/94‑1 (MQ=60)
AATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGT > SRR4302535.3300959/1‑94 (MQ=60)
ATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTT < SRR4302535.3999364/94‑1 (MQ=60)
ATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTT < SRR4302535.857603/94‑1 (MQ=60)
TGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTT > SRR4302535.2039896/1‑94 (MQ=60)
TGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTT < SRR4302535.4572454/94‑1 (MQ=60)
GGTGTAATCGAGCAGCTTGCGCGCTTCCTGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTAATAGTCCTGTTTG > SRR4302535.1332668/1‑94 (MQ=60)
GGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTG > SRR4302535.4433086/1‑94 (MQ=60)
GGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTG < SRR4302535.3410323/94‑1 (MQ=60)
GGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTG > SRR4302535.204636/1‑94 (MQ=60)
GGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTCACGGCGCTGGCGGCATCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTG < SRR4302535.4057054/94‑1 (MQ=60)
TGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGA > SRR4302535.1376955/1‑94 (MQ=60)
GTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAG > SRR4302535.630556/1‑94 (MQ=60)
TAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGG > SRR4302535.592360/1‑94 (MQ=60)
TAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGG < SRR4302535.2288658/94‑1 (MQ=60)
AATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGC > SRR4302535.4565291/1‑94 (MQ=60)
AATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGC > SRR4302535.1480092/1‑94 (MQ=60)
AATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGC > SRR4302535.2097830/1‑94 (MQ=60)
ATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCA > SRR4302535.4637726/1‑94 (MQ=60)
ATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCA > SRR4302535.4197316/1‑94 (MQ=60)
ATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCA < SRR4302535.321307/94‑1 (MQ=60)
ATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGGTTGGAGGCA > SRR4302535.2103840/1‑94 (MQ=60)
TCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCAT > SRR4302535.3580446/1‑94 (MQ=60)
CGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATC > SRR4302535.919281/1‑94 (MQ=60)
GAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGGGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCC > SRR4302535.2023222/1‑94 (MQ=60)
GAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCC < SRR4302535.2032292/94‑1 (MQ=60)
AGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCA < SRR4302535.3534426/94‑1 (MQ=60)
AGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCA > SRR4302535.2204023/1‑94 (MQ=60)
AGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCA < SRR4302535.1400627/94‑1 (MQ=60)
AGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCC > SRR4302535.1051679/1‑94 (MQ=60)
AGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCA > SRR4302535.4404641/1‑94 (MQ=60)
AGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCA > SRR4302535.1328639/1‑94 (MQ=60)
AGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCA > SRR4302535.3590852/1‑94 (MQ=60)
AGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCA > SRR4302535.4691065/1‑94 (MQ=60)
AGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCA < SRR4302535.2638207/94‑1 (MQ=60)
GCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCAC < SRR4302535.1914183/94‑1 (MQ=60)
GCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCAC < SRR4302535.918545/94‑1 (MQ=60)
GCGTGCGCGCTTCCGGGGGACCCGTGGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCAC < SRR4302535.411357/94‑1 (MQ=60)
CTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACG > SRR4302535.2551346/1‑94 (MQ=60)
TGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCC > SRR4302535.3111002/1‑94 (MQ=60)
GCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTC < SRR4302535.2179477/94‑1 (MQ=60)
CGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCG > SRR4302535.743229/1‑94 (MQ=60)
CTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTC > SRR4302535.2698778/1‑94 (MQ=60)
CTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTC < SRR4302535.1173055/94‑1 (MQ=60)
CCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATT > SRR4302535.256313/1‑94 (MQ=60)
GGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCA < SRR4302535.4244349/94‑1 (MQ=60)
GGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCAC < SRR4302535.374663/94‑1 (MQ=60)
GTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACG < SRR4302535.576897/94‑1 (MQ=60)
GTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACG < SRR4302535.524778/94‑1 (MQ=60)
GTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACG > SRR4302535.1007278/1‑94 (MQ=60)
TGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGC < SRR4302535.3890252/94‑1 (MQ=60)
TGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGC > SRR4302535.3491748/1‑94 (MQ=60)
GACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCA < SRR4302535.4322313/94‑1 (MQ=60)
GACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGGCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCA > SRR4302535.2228971/1‑94 (MQ=60)
ACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAG < SRR4302535.284137/94‑1 (MQ=60)
ACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAG < SRR4302535.1864228/94‑1 (MQ=60)
CCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGG < SRR4302535.145564/94‑1 (MQ=60)
CCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGG < SRR4302535.1896879/94‑1 (MQ=60)
CCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGG < SRR4302535.795115/94‑1 (MQ=60)
CCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGC < SRR4302535.365146/94‑1 (MQ=60)
CCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGC > SRR4302535.857246/1‑94 (MQ=60)
CCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGC > SRR4302535.322119/1‑94 (MQ=60)
GTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGCGGCATCCACCACGCCCTCGTCATTGACGCAGGCAT > SRR4302535.2059700/1‑94 (MQ=60)
GTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAT > SRR4302535.4180954/1‑94 (MQ=60)
GTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCAT < SRR4302535.936858/94‑1 (MQ=60)
GTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATA < SRR4302535.1689233/94‑1 (MQ=60)
TGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCA < SRR4302535.1820566/94‑1 (MQ=60)
TGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCA < SRR4302535.1456148/94‑1 (MQ=60)
GACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAG < SRR4302535.1957403/94‑1 (MQ=60)
CGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCC > SRR4302535.4310060/1‑94 (MQ=60)
GCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCA < SRR4302535.1151045/94‑1 (MQ=60)
GCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCA > SRR4302535.697187/1‑94 (MQ=60)
CTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCAT > SRR4302535.4641934/1‑94 (MQ=60)
CTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCAT < SRR4302535.4505473/94‑1 (MQ=60)
TGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATA < SRR4302535.3179418/94‑1 (MQ=60)
TGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATA > SRR4302535.315807/1‑94 (MQ=60)
TGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATA > SRR4302535.3091892/1‑94 (MQ=60)
TGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATA > SRR4302535.3794486/1‑94 (MQ=60)
GGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATAT > SRR4302535.1012499/1‑94 (MQ=60)
GCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATT < SRR4302535.851882/94‑1 (MQ=60)
GCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATT < SRR4302535.3102553/94‑1 (MQ=60)
CCCAGCAGAGCAAAGAGGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTAT < SRR4302535.2390173/94‑1 (MQ=60)
CCAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATC > SRR4302535.462322/1‑94 (MQ=60)
CAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCA < SRR4302535.3949559/94‑1 (MQ=60)
CAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCA < SRR4302535.3649078/94‑1 (MQ=60)
CAGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCA > SRR4302535.1729406/1‑94 (MQ=60)
AGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCAC > SRR4302535.796920/1‑94 (MQ=60)
AGCAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCAC < SRR4302535.1167059/94‑1 (MQ=60)
CAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGC > SRR4302535.2919263/1‑94 (MQ=60)
CAGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGC > SRR4302535.2244517/1‑94 (MQ=60)
AGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCA < SRR4302535.2761639/94‑1 (MQ=60)
AGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCA > SRR4302535.2327067/1‑94 (MQ=60)
AGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCA > SRR4302535.1158497/1‑94 (MQ=60)
AGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCA < SRR4302535.3212468/94‑1 (MQ=60)
AGAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCA > SRR4302535.3033918/1‑94 (MQ=60)
GAGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAG < SRR4302535.3566967/94‑1 (MQ=60)
AGCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGT > SRR4302535.3718765/1‑94 (MQ=60)
GCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTG < SRR4302535.4242891/94‑1 (MQ=60)
GCAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTG < SRR4302535.1128296/94‑1 (MQ=60)
CAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGC > SRR4302535.545719/1‑94 (MQ=60)
CAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGC < SRR4302535.2148009/94‑1 (MQ=60)
CAAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGC > SRR4302535.4446090/1‑94 (MQ=60)
AAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCG < SRR4302535.4406395/94‑1 (MQ=60)
AAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCG > SRR4302535.355386/1‑94 (MQ=60)
AAAGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACACAGGCATCCCAGCCGCCATATTTTTTATCACGCAGTGCG < SRR4302535.2774511/94‑1 (MQ=60)
AGAAGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCC > SRR4302535.3761015/1‑94 (MQ=60)
AGTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTT > SRR4302535.1891150/1‑94 (MQ=60)
GTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTC > SRR4302535.3593004/1‑94 (MQ=60)
GTGTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTC < SRR4302535.2903683/94‑1 (MQ=60)
GTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATCCCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCAT < SRR4302535.2825202/94‑1 (MQ=60)
GTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCAT < SRR4302535.231059/94‑1 (MQ=60)
GTTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCAT < SRR4302535.1467675/94‑1 (MQ=60)
TTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATG < SRR4302535.1163227/94‑1 (MQ=60)
TTGATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATG > SRR4302535.569814/1‑94 (MQ=60)
GATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATCCCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGC < SRR4302535.4652122/94‑1 (MQ=60)
GATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGC > SRR4302535.588500/1‑94 (MQ=60)
ATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCT < SRR4302535.1515710/94‑1 (MQ=60)
ATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCT > SRR4302535.161947/1‑94 (MQ=60)
ATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCT > SRR4302535.2573828/1‑94 (MQ=60)
ATAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCT < SRR4302535.4565658/94‑1 (MQ=60)
TAGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTT > SRR4302535.1905164/1‑94 (MQ=60)
TAGTCCTGTTTGGAGGCACCCCCCCCGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTT < SRR4302535.818088/94‑1 (MQ=60)
AGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTT < SRR4302535.2880188/94‑1 (MQ=60)
AGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTT > SRR4302535.4078781/1‑94 (MQ=60)
AGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTT > SRR4302535.368600/1‑94 (MQ=60)
AGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTT > SRR4302535.4519186/1‑94 (MQ=60)
AGTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTT > SRR4302535.3587554/1‑94 (MQ=60)
GTCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGGGCGCCGTTCATGGCTTTG > SRR4302535.3918161/1‑94 (MQ=60)
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ATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTG > NC_000913/4068915‑4069100
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
