Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,083,858	T→C	V88A (GTT→GCT)	fdhD →	affects formate dehydrogenase‑N

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,083,858	0	T	C	100.0%	717.0 / NA	227	V88A (GTT→GCT)	fdhD	affects formate dehydrogenase‑N
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (116/111); total (116/111)

Only 100 of 257 total aligned reads displayed.

GCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGTTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGAC  >  NC_000913/4083769‑4083947

gCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctcc                                                                                        <  2:1320307/93‑1 (MQ=255)

gCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctcc                                                                                        <  2:302902/93‑1 (MQ=255)

  ccAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctcctt                                                                                      >  1:2995080/1‑93 (MQ=255)

  ccAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctcctt                                                                                      <  1:486502/93‑1 (MQ=255)

   cAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctccttc                                                                                     >  2:1508642/1‑93 (MQ=255)

   cAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctccttc                                                                                     >  1:2279655/1‑93 (MQ=255)

   cAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctccttc                                                                                     >  1:1611801/1‑93 (MQ=255)

    aaaGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctccttcc                                                                                    <  1:410431/93‑1 (MQ=255)

    aaaGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctccttcc                                                                                    >  2:3072591/1‑93 (MQ=255)

    aaaGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGctccttcc                                                                                    <  2:899957/93‑1 (MQ=255)

     aaGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCtccttcct                                                                                   >  1:4038563/1‑93 (MQ=255)

        aCCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTa                                                                                <  2:2579023/93‑1 (MQ=255)

         ccTTTAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTaa                                                                               <  1:2871784/93‑1 (MQ=255)

         ccTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTaa                                                                               >  2:3809390/1‑93 (MQ=255)

         ccTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTaa                                                                               >  1:2373038/1‑93 (MQ=255)

         ccTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTaa                                                                               <  1:3112094/93‑1 (MQ=255)

         ccTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTaa                                                                               <  2:508989/93‑1 (MQ=255)

         ccTTGAGTACTTTGCGCTCGGGTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTaa                                                                               >  2:3506627/1‑93 (MQ=255)

          cTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAAt                                                                              >  1:3797185/1‑93 (MQ=255)

           ttGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATg                                                                             >  1:1198893/1‑93 (MQ=255)

           ttGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATg                                                                             >  1:2202472/1‑93 (MQ=255)

            tGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATgg                                                                            <  2:4633132/93‑1 (MQ=255)

             gAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGt                                                                           >  2:373571/1‑93 (MQ=255)

               gTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGTGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCt                                                                         <  2:2398963/93‑1 (MQ=255)

               gTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCt                                                                         <  1:3449169/93‑1 (MQ=255)

               gTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCt                                                                         <  2:1347087/93‑1 (MQ=255)

                tACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCtt                                                                        <  2:1050687/93‑1 (MQ=255)

                tACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCtt                                                                        <  2:2523066/93‑1 (MQ=255)

                tACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCtt                                                                        <  1:2419106/93‑1 (MQ=255)

                 aCTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTg                                                                       >  2:3894947/1‑93 (MQ=255)

                  cTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGa                                                                      >  1:3736275/1‑93 (MQ=255)

                  cTTGGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGa                                                                      <  2:3273604/93‑1 (MQ=255)

                   tttGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGaa                                                                     <  1:1894980/93‑1 (MQ=255)

                      tcgcTCGGTTTTTCGCTTTCGGAGGGGATTATCGAAGGTACGCGGGGTATCTGCGGCATGGATGTCGCTCGTTCGTGTAATGGTCTTGAAGTa                                                                  <  2:799566/92‑1 (MQ=255)

                        gcTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACa                                                                >  1:3071429/1‑93 (MQ=255)

                          tCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGCAGTACaaa                                                              >  1:4313391/1‑93 (MQ=255)

                          tCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACaaa                                                              >  1:1934794/1‑93 (MQ=255)

                            ggTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAAtt                                                            <  1:2700633/93‑1 (MQ=255)

                             gTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTg                                                           >  1:4594943/1‑93 (MQ=255)

                             gTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTg                                                           >  2:2913515/1‑93 (MQ=255)

                             gTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTg                                                           >  1:1372985/1‑93 (MQ=255)

                              tttttCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGa                                                          <  2:4533455/93‑1 (MQ=255)

                               ttttCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAg                                                         >  2:3102281/1‑93 (MQ=255)

                                tttCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGc                                                        >  2:229104/1‑93 (MQ=255)

                                tttCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGc                                                        >  2:1723084/1‑93 (MQ=255)

                                 ttCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCt                                                       <  2:2463012/93‑1 (MQ=255)

                                    gCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTc                                                    <  2:639712/93‑1 (MQ=255)

                                      tttCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCa                                                  >  2:1593967/1‑93 (MQ=255)

                                      tttCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCa                                                  >  2:2687973/1‑93 (MQ=255)

                                      tttCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCa                                                  >  1:3131708/1‑93 (MQ=255)

                                      tttCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCa                                                  >  1:2487587/1‑93 (MQ=255)

                                      tttCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCa                                                  >  1:4414874/1‑93 (MQ=255)

                                      tttCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCa                                                  <  2:4672484/93‑1 (MQ=255)

                                         ccGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGTCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAgcc                                               <  1:736566/93‑1 (MQ=255)

                                           gAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAgccgc                                             >  2:2065424/1‑93 (MQ=255)

                                              gggATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCcgccgc                                          >  1:2785565/1‑93 (MQ=255)

                                               ggATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCACCCGCCGCt                                         >  1:897355/1‑93 (MQ=255)

                                                gATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCtt                                        <  1:38827/93‑1 (MQ=255)

                                                gATTATCGAAAGACCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGGCGCCGCtt                                        >  1:4146937/1‑93 (MQ=255)

                                                  ttATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTa                                      <  1:3380069/93‑1 (MQ=255)

                                                  ttATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTa                                      <  1:3659811/93‑1 (MQ=255)

                                                   tATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTAt                                     <  1:3363881/93‑1 (MQ=255)

                                                   tATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTAt                                     <  2:1652683/93‑1 (MQ=255)

                                                   tATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTAt                                     <  2:3409755/93‑1 (MQ=255)

                                                    aTCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATg                                    >  2:396415/1‑93 (MQ=255)

                                                    aTCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATg                                    >  2:4353255/1‑93 (MQ=255)

                                                    aTCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATg                                    >  1:3262523/1‑93 (MQ=255)

                                                     tCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATgg                                   >  1:1615692/1‑93 (MQ=255)

                                                     tCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATgg                                   <  2:2213527/93‑1 (MQ=255)

                                                     tCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATgg                                   >  2:2642858/1‑93 (MQ=255)

                                                      cGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATggg                                  <  2:926424/93‑1 (MQ=255)

                                                       gAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATgggg                                 >  2:1873103/1‑93 (MQ=255)

                                                       gAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATgggg                                 >  2:717119/1‑93 (MQ=255)

                                                       gAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATgggg                                 >  1:1775921/1‑93 (MQ=255)

                                                       gAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATgggg                                 >  2:3620137/1‑93 (MQ=255)

                                                        aaaGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGt                                <  1:3539649/93‑1 (MQ=255)

                                                        aaaGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGt                                <  1:4508920/93‑1 (MQ=255)

                                                         aaGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGtt                               <  1:2073877/93‑1 (MQ=255)

                                                           gTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGa                             >  1:2216730/1‑93 (MQ=255)

                                                            tCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGaa                            <  2:2417655/93‑1 (MQ=255)

                                                               gcgcgATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGa                         <  2:2799256/93‑1 (MQ=255)

                                                                cgcgATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAg                        >  2:1813687/1‑93 (MQ=255)

                                                                 gcgATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAgc                       >  1:882210/1‑93 (MQ=255)

                                                                    atatCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGcgcc                    <  2:123132/93‑1 (MQ=255)

                                                                     tatCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGcgccc                   >  2:352724/1‑92 (MQ=255)

                                                                      atCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGcgccgc                  >  2:4165920/1‑93 (MQ=255)

                                                                      atCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGcgccgc                  >  1:391466/1‑93 (MQ=255)

                                                                      atCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGcgccgc                  >  1:266124/1‑93 (MQ=255)

                                                                       tCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCgccgcc                 >  2:1439489/1‑93 (MQ=255)

                                                                       tCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCgccgcc                 >  2:578187/1‑93 (MQ=255)

                                                                         ttCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCgg               <  2:2452679/93‑1 (MQ=255)

                                                                         ttCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCgg               >  1:593708/1‑93 (MQ=255)

                                                                          tCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCggg              <  2:2988145/93‑1 (MQ=255)

                                                                          tCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCggg              >  2:1106795/1‑93 (MQ=255)

                                                                             gCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGgcgc           <  1:1283680/93‑1 (MQ=255)

                                                                               aTGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTg         <  2:2815900/93‑1 (MQ=255)

                                                                                tGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTgg        <  1:2086176/93‑1 (MQ=255)

                                                                                   aTGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCgg     >  2:4314986/1‑93 (MQ=255)

                                                                                    tGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCggg    >  1:1315791/1‑93 (MQ=255)

                                                                                      tCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGAc  >  1:2240088/1‑93 (MQ=255)

GCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGTTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGAC  >  NC_000913/4083769‑4083947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTCGCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGTTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGACGTAC  >  NC_000913/4083765‑4083951

CGTCGCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGC                                                                                               >  SRR4302535.4652606/1‑94 (MQ=60)

CGTCGCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGC                                                                                               <  SRR4302535.4658843/94‑1 (MQ=60)

 GTCGCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCT                                                                                              >  SRR4302535.3813130/1‑94 (MQ=60)

 GTCGCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCT                                                                                              <  SRR4302535.3616731/94‑1 (MQ=60)

 GTCGCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCT                                                                                              >  SRR4302535.478673/1‑94 (MQ=60)

 GTCGCCCAAAGACCTTGACTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCT                                                                                              <  SRR4302535.3530332/94‑1 (MQ=60)

     CCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTT                                                                                          >  SRR4302535.3016076/1‑94 (MQ=60)

     CCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTT                                                                                          <  SRR4302535.1537255/94‑1 (MQ=60)

      CCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTC                                                                                         >  SRR4302535.2295938/1‑94 (MQ=60)

      CCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTC                                                                                         >  SRR4302535.1623421/1‑94 (MQ=60)

      CCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTC                                                                                         <  SRR4302535.489912/94‑1 (MQ=60)

       CAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCC                                                                                        >  SRR4302535.3848379/1‑94 (MQ=60)

        AAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCT                                                                                       <  SRR4302535.3758468/94‑1 (MQ=60)

        AAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCT                                                                                       >  SRR4302535.4066210/1‑94 (MQ=60)

        AAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCT                                                                                       >  SRR4302535.134011/1‑94 (MQ=60)

        AAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCT                                                                                       <  SRR4302535.413315/94‑1 (MQ=60)

           GACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTA                                                                                    >  SRR4302535.2514774/1‑94 (MQ=60)

           GACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTA                                                                                    >  SRR4302535.4084431/1‑94 (MQ=60)

           GACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTA                                                                                    <  SRR4302535.3733174/94‑1 (MQ=60)

           GACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTA                                                                                    >  SRR4302535.3798226/1‑94 (MQ=60)

           GACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCGTCCTGTA                                                                                    >  SRR4302535.4117863/1‑94 (MQ=60)

            ACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAA                                                                                   >  SRR4302535.2390082/1‑94 (MQ=60)

             CCTTTAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAAT                                                                                  <  SRR4302535.2892135/94‑1 (MQ=60)

             CCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAAT                                                                                  >  SRR4302535.3982544/1‑94 (MQ=60)

             CCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAAT                                                                                  >  SRR4302535.3823360/1‑94 (MQ=60)

             CCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAAT                                                                                  <  SRR4302535.3133758/94‑1 (MQ=60)

              CTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATG                                                                                 >  SRR4302535.1207483/1‑94 (MQ=60)

              CTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATG                                                                                 >  SRR4302535.2218169/1‑94 (MQ=60)

                  AGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCT                                                                             <  SRR4302535.2317554/94‑1 (MQ=60)

                   GTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTT                                                                            >  SRR4302535.3641652/1‑94 (MQ=60)

                   GTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTT                                                                            <  SRR4302535.3473149/94‑1 (MQ=60)

                   GTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTT                                                                            >  SRR4302535.3528549/1‑94 (MQ=60)

                   GTACTTGGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTT                                                                            <  SRR4302535.2090610/94‑1 (MQ=60)

                    TACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTG                                                                           <  SRR4302535.2254668/94‑1 (MQ=60)

                    TACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTG                                                                           <  SRR4302535.1921201/94‑1 (MQ=60)

                    TACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTG                                                                           <  SRR4302535.2436523/94‑1 (MQ=60)

                     ACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGA                                                                          >  SRR4302535.582360/1‑94 (MQ=60)

                     ACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGA                                                                          >  SRR4302535.3762135/1‑94 (MQ=60)

                      CTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAA                                                                         >  SRR4302535.3146601/1‑94 (MQ=60)

                      CTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAA                                                                         >  SRR4302535.555148/1‑94 (MQ=60)

                       TTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAG                                                                        >  SRR4302535.2249626/1‑94 (MQ=60)

                       TTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAG                                                                        <  SRR4302535.1908618/94‑1 (MQ=60)

                        TTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGT                                                                       <  SRR4302535.3412699/94‑1 (MQ=60)

                          GCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTAC                                                                     <  SRR4302535.2690450/94‑1 (MQ=60)

                           CGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACA                                                                    >  SRR4302535.1317115/1‑94 (MQ=60)

                           CGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACA                                                                    >  SRR4302535.3092875/1‑94 (MQ=60)

                            GCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAA                                                                   >  SRR4302535.3146265/1‑94 (MQ=60)

                            GCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAA                                                                   >  SRR4302535.2565660/1‑94 (MQ=60)

                             CTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGCAGTACAAA                                                                  >  SRR4302535.4342895/1‑94 (MQ=60)

                             CTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAA                                                                  >  SRR4302535.1948728/1‑94 (MQ=60)

                               CGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATT                                                                <  SRR4302535.3546436/94‑1 (MQ=60)

                               CGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATT                                                                <  SRR4302535.239332/94‑1 (MQ=60)

                                GGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTG                                                               <  SRR4302535.2719929/94‑1 (MQ=60)

                                GGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTG                                                               >  SRR4302535.4626209/1‑94 (MQ=60)

                                GGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTG                                                               <  SRR4302535.1433826/94‑1 (MQ=60)

                                GGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTG                                                               >  SRR4302535.1382795/1‑94 (MQ=60)

                                GGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTG                                                               <  SRR4302535.2291932/94‑1 (MQ=60)

                                  TTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAG                                                             <  SRR4302535.218065/94‑1 (MQ=60)

                                  TTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAG                                                             <  SRR4302535.1708028/94‑1 (MQ=60)

                                  TTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAG                                                             <  SRR4302535.1257387/94‑1 (MQ=60)

                                   TTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGC                                                            >  SRR4302535.3046026/1‑94 (MQ=60)

                                    TTTCGCTTTCCGAGGGGTTTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCT                                                           >  SRR4302535.2302071/1‑94 (MQ=60)

                                    TTTCGCTTTCCGAGGGGATTATCGAACGTCCGCGCGATATCTTCGGCATGGATGTAGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCT                                                           <  SRR4302535.4667248/94‑1 (MQ=60)

                                    TTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCT                                                           <  SRR4302535.4243765/94‑1 (MQ=60)

                                    TTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCT                                                           <  SRR4302535.3406203/94‑1 (MQ=60)

                                    TTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCT                                                           <  SRR4302535.2970138/94‑1 (MQ=60)

                                    TTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCT                                                           <  SRR4302535.4503156/94‑1 (MQ=60)

                                     TTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTT                                                          <  SRR4302535.1295905/94‑1 (MQ=60)

                                     TTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTT                                                          >  SRR4302535.4682850/1‑94 (MQ=60)

                                     TTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTT                                                          <  SRR4302535.4556970/94‑1 (MQ=60)

                                        GCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCC                                                       >  SRR4302535.3393676/1‑94 (MQ=60)

                                         CTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCA                                                      >  SRR4302535.3153518/1‑94 (MQ=60)

                                         CTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCA                                                      <  SRR4302535.1937774/94‑1 (MQ=60)

                                         CTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCA                                                      >  SRR4302535.2505524/1‑94 (MQ=60)

                                         CTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCA                                                      <  SRR4302535.415531/94‑1 (MQ=60)

                                         CTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCA                                                      >  SRR4302535.4445089/1‑94 (MQ=60)

                                             CCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGTCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCG                                                  <  SRR4302535.741744/94‑1 (MQ=60)

                                             CCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCG                                                  <  SRR4302535.4365991/94‑1 (MQ=60)

                                             CCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCG                                                  <  SRR4302535.3289654/94‑1 (MQ=60)

                                             CCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCG                                                  <  SRR4302535.3159676/94‑1 (MQ=60)

                                               GAGTGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCC                                                >  SRR4302535.2756194/1‑94 (MQ=60)

                                                 GGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGC                                              >  SRR4302535.1727491/1‑94 (MQ=60)

                                                 GGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGC                                              >  SRR4302535.2805387/1‑94 (MQ=60)

                                                  GGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCACCCGCCGCT                                             >  SRR4302535.903717/1‑94 (MQ=60)

                                                   GGATTATCGAAAGACCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGGCGCCGCTT                                            >  SRR4302535.4175333/1‑94 (MQ=60)

                                                    GATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTT                                           <  SRR4302535.39126/94‑1 (MQ=60)

                                                      TTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTAT                                         <  SRR4302535.3403570/94‑1 (MQ=60)

                                                      TTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTAT                                         <  SRR4302535.3685142/94‑1 (MQ=60)

                                                       TATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATG                                        <  SRR4302535.3387288/94‑1 (MQ=60)

                                                       TATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATG                                        >  SRR4302535.3285184/1‑94 (MQ=60)

                                                        ATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGG                                       >  SRR4302535.1627336/1‑94 (MQ=60)

                                                        ATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGCAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGG                                       <  SRR4302535.3061310/94‑1 (MQ=60)

                                                         TCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGG                                      <  SRR4302535.295024/94‑1 (MQ=60)

                                                          CGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGG                                     >  SRR4302535.1788780/1‑94 (MQ=60)

                                                           GAAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGT                                    >  SRR4302535.2224637/1‑94 (MQ=60)

                                                            AAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTT                                   <  SRR4302535.3564226/94‑1 (MQ=60)

                                                            AAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTT                                   <  SRR4302535.4539860/94‑1 (MQ=60)

                                                            AAAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTT                                   <  SRR4302535.1951162/94‑1 (MQ=60)

                                                             AAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTG                                  <  SRR4302535.2088816/94‑1 (MQ=60)

                                                             AAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTG                                  <  SRR4302535.4035057/94‑1 (MQ=60)

                                                             AAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTG                                  >  SRR4302535.3940757/1‑94 (MQ=60)

                                                             AAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTG                                  >  SRR4302535.1886875/1‑94 (MQ=60)

                                                             AAGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTG                                  >  SRR4302535.1625371/1‑94 (MQ=60)

                                                              AGTCCGCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGA                                 >  SRR4302535.2232511/1‑94 (MQ=60)

                                                                   GCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAG                            <  SRR4302535.2461485/94‑1 (MQ=60)

                                                                   GCGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAG                            <  SRR4302535.390298/94‑1 (MQ=60)

                                                                    CGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGC                           >  SRR4302535.888457/1‑94 (MQ=60)

                                                                    CGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGC                           <  SRR4302535.2044122/94‑1 (MQ=60)

                                                                    CGCGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGC                           <  SRR4302535.4215247/94‑1 (MQ=60)

                                                                      CGATATCTTCGGCATGGATGTCGCTCCTTTCTGTAATGGTCTTTAAGTACAAATTGAGCTTTCAAGACGCCGCTTTATGGGGTTGAAGGAGAGC                         >  SRR4302535.4387749/1‑94 (MQ=60)

                                                                      CGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGC                         <  SRR4302535.810421/94‑1 (MQ=60)

                                                                      CGATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGC                         >  SRR4302535.3335648/1‑94 (MQ=60)

                                                                       GATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCC                        >  SRR4302535.2793045/1‑94 (MQ=60)

                                                                       GATATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCC                        >  SRR4302535.792582/1‑94 (MQ=60)

                                                                         TATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGC                      >  SRR4302535.394192/1‑94 (MQ=60)

                                                                         TATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGC                      >  SRR4302535.267972/1‑94 (MQ=60)

                                                                         TATCTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGC                      >  SRR4302535.900414/1‑94 (MQ=60)

                                                                            CTTCGGCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGG                   >  SRR4302535.597873/1‑94 (MQ=60)

                                                                                 GCATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCT              <  SRR4302535.1292831/94‑1 (MQ=60)

                                                                                  CATGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTG             >  SRR4302535.218303/1‑94 (MQ=60)

                                                                                    TGGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGC           <  SRR4302535.2101200/94‑1 (MQ=60)

                                                                                     GGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCG          >  SRR4302535.3113353/1‑94 (MQ=60)

                                                                                     GGATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTACCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCG          <  SRR4302535.4524338/94‑1 (MQ=60)

                                                                                      GATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGG         <  SRR4302535.2808768/94‑1 (MQ=60)

                                                                                       ATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGG        >  SRR4302535.1325189/1‑94 (MQ=60)

                                                                                       ATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGG        >  SRR4302535.2395989/1‑94 (MQ=60)

                                                                                       ATGTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGACCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGG        <  SRR4302535.698959/94‑1 (MQ=60)

                                                                                         GTCGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGAC      >  SRR4302535.2256023/1‑94 (MQ=60)

                                                                                           CGCTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGACGT    <  SRR4302535.1199834/94‑1 (MQ=60)

                                                                                             CTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGACGTAG  >  SRR4302535.1033413/1‑94 (MQ=60)

                                                                                             CTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGACGTAC  <  SRR4302535.3870779/94‑1 (MQ=60)

                                                                                             CTCCTTCCTGTAATGGTCTGAAAGTACAAATTGAGCTTCCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGACGTAC  <  SRR4302535.3549383/94‑1 (MQ=60)

CGTCGCCCAAAGACCTTGAGTACTTTGCGCTCGGTTTTTCGCTTTCCGAGGGGATTATCGAAAGTCCGCGCGATATCTTCGGCATGGATGTCGTTCCTTCCTGTAATGGTCTTGAAGTACAAATTGAGCTTTCCAGCCGCCGCTTTATGGGGTTGAAGGAGCGCCGCCGGGCGCTGGCGGGACGTAC  >  NC_000913/4083765‑4083951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`