Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,103,641	T→C	intergenic (‑390/‑408)	cpxR ← / → yiiP	transcriptional regulator in 2‑component system/putative transport system permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,103,641	0	T	C	100.0%	836.5 / NA	266	intergenic (‑390/‑408)	cpxR/yiiP	transcriptional regulator in 2‑component system/putative transport system permease protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (138/128); total (138/128)

Only 100 of 276 total aligned reads displayed.

TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAG  >  NC_000913/4103551‑4103729

tAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGc                                                                                        <  2:1862186/93‑1 (MQ=255)

 aaCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCa                                                                                       <  2:1093356/93‑1 (MQ=255)

    cGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCg                                                                                    >  2:3190013/1‑93 (MQ=255)

      aaCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGcc                                                                                  >  1:1898612/1‑93 (MQ=255)

       aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt                                                                                 >  2:2505817/1‑93 (MQ=255)

       aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt                                                                                 <  2:14734/93‑1 (MQ=255)

       aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt                                                                                 <  1:2429233/93‑1 (MQ=255)

        cATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCtt                                                                                <  2:1421864/93‑1 (MQ=255)

         aTCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCGCGGCACGACCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTg                                                                               >  2:933710/1‑93 (MQ=255)

         aTCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTg                                                                               <  1:3909910/93‑1 (MQ=255)

         aTCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTg                                                                               >  1:232450/1‑93 (MQ=255)

          tCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGt                                                                              >  1:3992484/1‑93 (MQ=255)

           cAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTCGAGACAACGCATCGCCTTGTc                                                                             <  1:880256/93‑1 (MQ=255)

             gCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAc                                                                           >  1:514387/1‑93 (MQ=255)

             gCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAc                                                                           >  1:3200400/1‑93 (MQ=255)

              cGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAcc                                                                          <  1:1512442/93‑1 (MQ=255)

               gTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCg                                                                         <  2:2118907/93‑1 (MQ=255)

               gTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCg                                                                         >  2:847183/1‑93 (MQ=255)

               gTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCg                                                                         >  2:3871823/1‑93 (MQ=255)

                tCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGc                                                                        <  2:4394208/93‑1 (MQ=255)

                 cagcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCa                                                                       <  1:4222541/93‑1 (MQ=255)

                    cagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaa                                                                    >  2:1144873/1‑93 (MQ=255)

                      gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa                                                                  >  2:2881484/1‑93 (MQ=255)

                      gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAACGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa                                                                  >  1:1018231/1‑93 (MQ=255)

                       aTGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAt                                                                 <  1:3872968/93‑1 (MQ=255)

                         gCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAttt                                                               <  2:3149000/93‑1 (MQ=255)

                           gagaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAtttta                                                             >  2:513134/1‑92 (MQ=255)

                           gagaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtg                                                             >  2:333666/1‑93 (MQ=255)

                            agaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtga                                                            <  1:3055725/93‑1 (MQ=255)

                              aTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgatg                                                          <  2:2807326/93‑1 (MQ=255)

                              aTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgatg                                                          >  2:2604823/1‑93 (MQ=255)

                                cTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaa                                                        <  2:702277/93‑1 (MQ=255)

                                cTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaa                                                        <  2:2303680/93‑1 (MQ=255)

                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      <  1:2779127/93‑1 (MQ=255)

                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      >  1:3410669/1‑93 (MQ=255)

                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      >  1:1253501/1‑93 (MQ=255)

                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      <  1:4094312/93‑1 (MQ=255)

                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      <  2:2547724/93‑1 (MQ=255)

                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      <  2:830182/93‑1 (MQ=255)

                                   aTGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAACATTTTGATGAAAAc                                                     >  1:2222895/1‑93 (MQ=255)

                                   aTGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAc                                                     >  1:2902883/1‑93 (MQ=255)

                                   aTGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAc                                                     >  2:1015267/1‑93 (MQ=255)

                                     gCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGc                                                   <  2:1312229/93‑1 (MQ=255)

                                     gCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGc                                                   <  1:894842/93‑1 (MQ=255)

                                      cAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCt                                                  <  1:1830920/93‑1 (MQ=255)

                                       aaCAGGCCCGGCGCGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtg                                                 <  1:4250831/93‑1 (MQ=255)

                                       aaCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtg                                                 <  2:365847/93‑1 (MQ=255)

                                       aaCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtg                                                 >  1:1686290/1‑93 (MQ=255)

                                        aCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtgt                                                <  1:2819212/93‑1 (MQ=255)

                                        aCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtgt                                                >  2:2778206/1‑93 (MQ=255)

                                        aCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtgt                                                <  2:4388078/93‑1 (MQ=255)

                                         cAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtgtg                                               <  2:907448/93‑1 (MQ=255)

                                          aGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtgttc                                              >  1:3315901/1‑91 (MQ=255)

                                                 gCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcaca                                       <  1:4392615/93‑1 (MQ=255)

                                                  agagAACACCCTCCTGTTAATGTTAGCGAAATGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAg                                      <  2:3172526/90‑1 (MQ=255)

                                                   aCGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAgg                                     >  1:821901/1‑93 (MQ=255)

                                                   aCGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAgg                                     <  2:4247336/93‑1 (MQ=255)

                                                   aCGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAgg                                     <  1:4312533/93‑1 (MQ=255)

                                                    cGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGc                                    <  2:4003905/93‑1 (MQ=255)

                                                    cGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGc                                    >  1:134884/1‑93 (MQ=255)

                                                     gAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCa                                   <  2:3309215/93‑1 (MQ=255)

                                                      aaCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAg                                  <  2:2185648/93‑1 (MQ=255)

                                                      aaCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAg                                  >  1:1394386/1‑93 (MQ=255)

                                                       aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa                                 >  2:3553624/1‑93 (MQ=255)

                                                       aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa                                 >  2:3042/1‑93 (MQ=255)

                                                        cAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaa                                <  1:2087045/93‑1 (MQ=255)

                                                        cAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaa                                <  2:3705912/93‑1 (MQ=255)

                                                         aGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaa                               >  2:622466/1‑93 (MQ=255)

                                                          gCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaa                              >  2:1705551/1‑93 (MQ=255)

                                                          gCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaa                              >  1:1790332/1‑93 (MQ=255)

                                                          gCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaa                              >  1:3397413/1‑93 (MQ=255)

                                                           cctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaaa                             <  1:3505352/93‑1 (MQ=255)

                                                             tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt                           <  2:4630422/93‑1 (MQ=255)

                                                             tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt                           >  1:2655629/1‑93 (MQ=255)

                                                             tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt                           >  2:2622970/1‑93 (MQ=255)

                                                              cctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATg                          >  2:4429229/1‑93 (MQ=255)

                                                               ctGTTAATGTTAGCGTACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATgg                         >  2:3505108/1‑93 (MQ=255)

                                                               ctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATgg                         >  2:2933296/1‑93 (MQ=255)

                                                                tGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGc                        <  1:2501917/93‑1 (MQ=255)

                                                                 gTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCg                       >  1:3205448/1‑93 (MQ=255)

                                                                  ttAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGa                      >  1:4557690/1‑93 (MQ=255)

                                                                    aaTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAt                    >  2:560078/1‑93 (MQ=255)

                                                                     aTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATg                   <  1:1175975/93‑1 (MQ=255)

                                                                     aTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATg                   >  1:2978053/1‑93 (MQ=255)

                                                                      tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGa                  >  2:1258770/1‑93 (MQ=255)

                                                                      tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGa                  <  2:1720026/93‑1 (MQ=255)

                                                                      tGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGa                  <  1:2590708/93‑1 (MQ=255)

                                                                       gTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAg                 >  1:3254052/1‑93 (MQ=255)

                                                                        ttAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGc                >  1:730629/1‑93 (MQ=255)

                                                                           gCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaaa             >  1:10667/1‑93 (MQ=255)

                                                                             gAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCTCACATGCAGAAAAAATGGCGAATTAGCAAAtt           <  2:3787129/93‑1 (MQ=255)

                                                                             gAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAtt           >  2:3115226/1‑93 (MQ=255)

                                                                              aaCTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTg          >  2:4141035/1‑93 (MQ=255)

                                                                               aCTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGc         <  1:1963782/93‑1 (MQ=255)

                                                                                cTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCt        >  1:3700969/1‑93 (MQ=255)

                                                                                 tGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTc       <  2:4504276/93‑1 (MQ=255)

                                                                                   gagaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGt     <  2:3971905/93‑1 (MQ=255)

                                                                                   gagaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGt     <  2:2413725/93‑1 (MQ=255)

                                                                                    agaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTc    <  2:1924662/93‑1 (MQ=255)

                                                                                    agaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTc    <  1:3190013/93‑1 (MQ=255)

TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAG  >  NC_000913/4103551‑4103729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT  >  NC_000913/4103548‑4103732

GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAG                                                                                             <  SRR4302535.3253768/94‑1 (MQ=60)

GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC                                                                                             >  SRR4302535.2563186/1‑94 (MQ=60)

GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC                                                                                             <  SRR4302535.3764411/94‑1 (MQ=60)

GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC                                                                                             <  SRR4302535.3225451/94‑1 (MQ=60)

  TTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGC                                                                                           >  SRR4302535.891737/1‑94 (MQ=60)

  TTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGC                                                                                           >  SRR4302535.383618/1‑94 (MQ=60)

   TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCA                                                                                          >  SRR4302535.296443/1‑94 (MQ=60)

     ACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATC                                                                                        <  SRR4302535.3033570/94‑1 (MQ=60)

     ACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATC                                                                                        <  SRR4302535.2461934/94‑1 (MQ=60)

     ACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATC                                                                                        >  SRR4302535.2395896/1‑94 (MQ=60)

      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                       >  SRR4302535.4311049/1‑94 (MQ=60)

      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                       <  SRR4302535.3224991/94‑1 (MQ=60)

      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                       <  SRR4302535.1408685/94‑1 (MQ=60)

        GAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCC                                                                                     >  SRR4302535.1912273/1‑94 (MQ=60)

          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                   >  SRR4302535.763725/1‑94 (MQ=60)

          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                   <  SRR4302535.2446736/94‑1 (MQ=60)

           CATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTG                                                                                  >  SRR4302535.234054/1‑94 (MQ=60)

           CATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACCAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTG                                                                                  <  SRR4302535.4272594/94‑1 (MQ=60)

            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                 >  SRR4302535.280441/1‑94 (MQ=60)

            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                 >  SRR4302535.4019794/1‑94 (MQ=60)

            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                 <  SRR4302535.3936686/94‑1 (MQ=60)

              CAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCA                                                                               >  SRR4302535.2204578/1‑94 (MQ=60)

              CAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTCGAGACAACGCATCGCCTTGTCA                                                                               <  SRR4302535.886488/94‑1 (MQ=60)

               AGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAC                                                                              >  SRR4302535.1510515/1‑94 (MQ=60)

               AGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAC                                                                              >  SRR4302535.3222557/1‑94 (MQ=60)

               AGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAC                                                                              >  SRR4302535.517982/1‑94 (MQ=60)

                 CGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCG                                                                            <  SRR4302535.1523336/94‑1 (MQ=60)

                    CAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAG                                                                         <  SRR4302535.4251432/94‑1 (MQ=60)

                       CAGATGCGAGATCTTATGCAACAGGCCCGCCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAA                                                                      <  SRR4302535.2622219/94‑1 (MQ=60)

                        AGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAACGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAA                                                                     >  SRR4302535.1025467/1‑94 (MQ=60)

                          ATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATT                                                                   <  SRR4302535.3899582/94‑1 (MQ=60)

                          ATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATT                                                                   >  SRR4302535.3357744/1‑94 (MQ=60)

                          ATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATT                                                                   <  SRR4302535.163794/94‑1 (MQ=60)

                          ATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATT                                                                   <  SRR4302535.1973789/94‑1 (MQ=60)

                            GCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTT                                                                 <  SRR4302535.3273724/94‑1 (MQ=60)

                            GCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTT                                                                 >  SRR4302535.1722609/1‑94 (MQ=60)

                             CGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTG                                                                >  SRR4302535.3485122/1‑94 (MQ=60)

                             CGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTG                                                                >  SRR4302535.1915162/1‑94 (MQ=60)

                             CGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTG                                                                >  SRR4302535.3358009/1‑94 (MQ=60)

                              GAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGA                                                               >  SRR4302535.2042052/1‑94 (MQ=60)

                               AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT                                                              <  SRR4302535.3077115/94‑1 (MQ=60)

                               AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT                                                              >  SRR4302535.2333682/1‑94 (MQ=60)

                                GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG                                                             <  SRR4302535.3285232/94‑1 (MQ=60)

                                GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCCAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG                                                             <  SRR4302535.3959175/94‑1 (MQ=60)

                                 ATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGA                                                            >  SRR4302535.4367302/1‑94 (MQ=60)

                                  TCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAA                                                           <  SRR4302535.3983883/94‑1 (MQ=60)

                                  TCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAA                                                           <  SRR4302535.4221180/94‑1 (MQ=60)

                                  TCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAA                                                           >  SRR4302535.438307/1‑94 (MQ=60)

                                  TCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAA                                                           <  SRR4302535.1805901/94‑1 (MQ=60)

                                   CTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAA                                                          <  SRR4302535.356664/94‑1 (MQ=60)

                                    TTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAA                                                         >  SRR4302535.1262465/1‑94 (MQ=60)

                                    TTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAA                                                         >  SRR4302535.3434400/1‑94 (MQ=60)

                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAACATTTTGATGAAAAC                                                        >  SRR4302535.2238717/1‑94 (MQ=60)

                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC                                                        <  SRR4302535.4122332/94‑1 (MQ=60)

                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC                                                        >  SRR4302535.2923403/1‑94 (MQ=60)

                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC                                                        <  SRR4302535.2798914/94‑1 (MQ=60)

                                      ATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACG                                                       <  SRR4302535.678008/94‑1 (MQ=60)

                                        GCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCT                                                     <  SRR4302535.901189/94‑1 (MQ=60)

                                         CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAGGCTG                                                    >  SRR4302535.3219350/1‑94 (MQ=60)

                                         CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG                                                    <  SRR4302535.1844134/94‑1 (MQ=60)

                                         CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG                                                    <  SRR4302535.1311620/94‑1 (MQ=60)

                                         CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG                                                    >  SRR4302535.1698499/1‑94 (MQ=60)

                                          AACAGGCCCGGCGCGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGT                                                   <  SRR4302535.4279948/94‑1 (MQ=60)

                                           ACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTG                                                  >  SRR4302535.1103181/1‑94 (MQ=60)

                                           ACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTG                                                  <  SRR4302535.1340553/94‑1 (MQ=60)

                                           ACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTG                                                  <  SRR4302535.2839236/94‑1 (MQ=60)

                                           ACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTG                                                  >  SRR4302535.2503780/1‑94 (MQ=60)

                                            CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTTC                                                 >  SRR4302535.3338973/1‑94 (MQ=60)

                                             AGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCG                                                <  SRR4302535.2440855/94‑1 (MQ=60)

                                                    GCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAG                                         <  SRR4302535.4422669/94‑1 (MQ=60)

                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCCCAGG                                        <  SRR4302535.1200057/94‑1 (MQ=60)

                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                        >  SRR4302535.3900544/1‑94 (MQ=60)

                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                        >  SRR4302535.827663/1‑94 (MQ=60)

                                                      ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC                                       <  SRR4302535.4342033/94‑1 (MQ=60)

                                                      ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC                                       >  SRR4302535.135825/1‑94 (MQ=60)

                                                      ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC                                       >  SRR4302535.859148/1‑94 (MQ=60)

                                                      ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC                                       <  SRR4302535.7907/94‑1 (MQ=60)

                                                        GANCNCNCNCCNGNTAATGNTNNNGAACTGNAGACAACGNATCGCCTTNTCACCGCNGAAAATTTTGANGANAACGCTGTGCGCGCACAGGCAG                                     <  SRR4302535.1603077/94‑1 (MQ=60)

                                                        GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG                                     >  SRR4302535.1404344/1‑94 (MQ=60)

                                                        GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG                                     >  SRR4302535.3480678/1‑94 (MQ=60)

                                                         AACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGA                                    >  SRR4302535.165563/1‑94 (MQ=60)

                                                           CAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAA                                  >  SRR4302535.3031194/1‑94 (MQ=60)

                                                           CAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAA                                  <  SRR4302535.2102075/94‑1 (MQ=60)

                                                            AGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAA                                 >  SRR4302535.1803280/1‑94 (MQ=60)

                                                            AGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAA                                 >  SRR4302535.3421052/1‑94 (MQ=60)

                                                            AGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAA                                 >  SRR4302535.342954/1‑94 (MQ=60)

                                                            AGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAA                                 >  SRR4302535.625638/1‑94 (MQ=60)

                                                              CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCTCGCACAGGCAGAAAAAA                               >  SRR4302535.170370/1‑94 (MQ=60)

                                                              CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAA                               >  SRR4302535.2696385/1‑94 (MQ=60)

                                                              CCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAA                               <  SRR4302535.3529711/94‑1 (MQ=60)

                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGCAAATTTTGATGAAACCGCTGTGCGCGCACAGGCAGAAAAAAT                              >  SRR4302535.2280041/1‑94 (MQ=60)

                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                              >  SRR4302535.2674657/1‑94 (MQ=60)

                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                              <  SRR4302535.3692895/94‑1 (MQ=60)

                                                                TCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATG                             <  SRR4302535.2793139/94‑1 (MQ=60)

                                                                TCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATG                             <  SRR4302535.4233571/94‑1 (MQ=60)

                                                                GCCTGTTAAGGTTAGCTAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATG                             <  SRR4302535.2550987/94‑1 (MQ=60)

                                                                 CCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGG                            >  SRR4302535.4096554/1‑94 (MQ=60)

                                                                  CTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGC                           <  SRR4302535.1375449/94‑1 (MQ=60)

                                                                  CTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGC                           >  SRR4302535.321669/1‑94 (MQ=60)

                                                                   TGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCG                          >  SRR4302535.3227646/1‑94 (MQ=60)

                                                                   TGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCG                          >  SRR4302535.4297707/1‑94 (MQ=60)

                                                                   TGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCG                          <  SRR4302535.2519961/94‑1 (MQ=60)

                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAACTGGCGA                         >  SRR4302535.4606112/1‑94 (MQ=60)

                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                         >  SRR4302535.4588810/1‑94 (MQ=60)

                                                                      TAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAT                       <  SRR4302535.863140/94‑1 (MQ=60)

                                                                       AATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATG                      <  SRR4302535.3163872/94‑1 (MQ=60)

                                                                       AATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATG                      >  SRR4302535.2998944/1‑94 (MQ=60)

                                                                       AATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATG                      >  SRR4302535.2995209/1‑94 (MQ=60)

                                                                        ATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGA                     <  SRR4302535.1184371/94‑1 (MQ=60)

                                                                        ATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGA                     >  SRR4302535.1257948/1‑94 (MQ=60)

                                                                         TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG                    >  SRR4302535.3276661/1‑94 (MQ=60)

                                                                         TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG                    <  SRR4302535.2609309/94‑1 (MQ=60)

                                                                          GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC                   <  SRR4302535.3265570/94‑1 (MQ=60)

                                                                          GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC                   >  SRR4302535.735761/1‑94 (MQ=60)

                                                                          ATTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC                   <  SRR4302535.3773956/94‑1 (MQ=60)

                                                                            TAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAA                 <  SRR4302535.3193505/94‑1 (MQ=60)

                                                                             AGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAA                <  SRR4302535.999485/94‑1 (MQ=60)

                                                                             AGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAA                >  SRR4302535.4118298/1‑94 (MQ=60)

                                                                             AGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAA                >  SRR4302535.10747/1‑94 (MQ=60)

                                                                              GCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAT               <  SRR4302535.4545742/94‑1 (MQ=60)

                                                                              GCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAT               <  SRR4302535.2817835/94‑1 (MQ=60)

                                                                              GCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAT               <  SRR4302535.4509941/94‑1 (MQ=60)

                                                                               CGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATT              >  SRR4302535.2841181/1‑94 (MQ=60)

                                                                                  ACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCT           >  SRR4302535.2012296/1‑94 (MQ=60)

                                                                                  ACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCT           <  SRR4302535.1977941/94‑1 (MQ=60)

                                                                                  ACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCT           <  SRR4302535.974603/94‑1 (MQ=60)

                                                                                  ACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCT           >  SRR4302535.3726602/1‑94 (MQ=60)

                                                                                   CTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTC          >  SRR4302535.116953/1‑94 (MQ=60)

                                                                                   CGGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTC          <  SRR4302535.3322120/94‑1 (MQ=60)

                                                                                     GGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGT        >  SRR4302535.185109/1‑94 (MQ=60)

                                                                                     GGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGT        <  SRR4302535.18454/94‑1 (MQ=60)

                                                                                      GAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTC       <  SRR4302535.261417/94‑1 (MQ=60)

                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA      <  SRR4302535.3212075/94‑1 (MQ=60)

                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA      >  SRR4302535.1042609/1‑94 (MQ=60)

                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT  <  SRR4302535.3886744/94‑1 (MQ=60)

                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT  >  SRR4302535.3243150/1‑94 (MQ=60)

GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT  >  NC_000913/4103548‑4103732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`