Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,103,641 T→C intergenic (‑390/‑408) cpxR ← / → yiiP transcriptional regulator in 2‑component system/putative transport system permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,103,6410TC99.8% 1231.4 / ‑5.2 395intergenic (‑390/‑408)cpxR/yiiPtranscriptional regulator in 2‑component system/putative transport system permease protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (199/195);  total (200/195)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.81e-01

Only 100 of 403 total aligned reads displayed.

TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAG  >  NC_000913/4103551‑4103729
                                                                                          |                                                                                        
 aaCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCa                                                                                       <  2:4123911/93‑1 (MQ=255)
  aCCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAt                                                                                      <  1:6576660/93‑1 (MQ=255)
   ccGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATc                                                                                     <  1:3579367/93‑1 (MQ=255)
   ccGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATc                                                                                     >  2:2610100/1‑93 (MQ=255)
   ccGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATc                                                                                     <  1:7142570/93‑1 (MQ=255)
    cGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCg                                                                                    >  1:7353289/1‑93 (MQ=255)
     gAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGc                                                                                   <  1:169921/93‑1 (MQ=255)
       aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt                                                                                 >  1:3043537/1‑93 (MQ=255)
       aCATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCt                                                                                 <  1:4447644/93‑1 (MQ=255)
        cATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCGCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCtt                                                                                >  2:429436/1‑93 (MQ=255)
        cATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCtt                                                                                <  1:6217074/93‑1 (MQ=255)
        cATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCtt                                                                                <  2:5049708/93‑1 (MQ=255)
         aTCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTg                                                                               <  1:1827850/93‑1 (MQ=255)
          tCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGt                                                                              >  1:2342275/1‑93 (MQ=255)
          tCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGt                                                                              >  1:3373078/1‑93 (MQ=255)
          acAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGt                                                                              <  1:160473/92‑1 (MQ=255)
             gCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAc                                                                           >  2:1516685/1‑93 (MQ=255)
             gCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAc                                                                           <  1:6301282/93‑1 (MQ=255)
              cGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCAcc                                                                          <  1:4675356/93‑1 (MQ=255)
                tCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGc                                                                        >  1:3863392/1‑93 (MQ=255)
                tCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGc                                                                        >  1:406102/1‑93 (MQ=255)
                 cagcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCa                                                                       <  1:3269500/93‑1 (MQ=255)
                 cagcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCa                                                                       <  2:2832151/93‑1 (MQ=255)
                  agcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAg                                                                      <  1:5556169/93‑1 (MQ=255)
                  agcagATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAg                                                                      >  1:1142448/1‑93 (MQ=255)
                      gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa                                                                  >  1:7791309/1‑93 (MQ=255)
                      gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa                                                                  >  1:6922489/1‑93 (MQ=255)
                      gATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGaaaa                                                                  <  1:2166875/93‑1 (MQ=255)
                        tGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAtt                                                                >  2:3352221/1‑93 (MQ=255)
                             gaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgat                                                           <  1:3918386/93‑1 (MQ=255)
                             gaTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgat                                                           <  1:2411065/93‑1 (MQ=255)
                              aTCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTtgatg                                                          >  2:6257172/1‑93 (MQ=255)
                                cTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaa                                                        >  2:6173187/1‑93 (MQ=255)
                                 ttATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaa                                                       >  2:1783390/1‑93 (MQ=255)
                                 ttATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaa                                                       >  2:7885137/1‑93 (MQ=255)
                                 ttATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGGTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaa                                                       >  2:7134609/1‑93 (MQ=255)
                                 ttACGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTGAGCGAACTGGAGACAATGTATCGTCTTGTCACCGCAGAAACTTTTGTTGaaa                                                       >  2:490967/1‑93 (MQ=255)
                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      <  1:258256/93‑1 (MQ=255)
                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      <  1:2674971/93‑1 (MQ=255)
                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGaaaa                                                      <  1:477700/93‑1 (MQ=255)
                                  tATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTGGTCCCCGCAGAAAATTTTGATGaaaa                                                      <  1:1041631/93‑1 (MQ=255)
                                   aTGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAc                                                     >  2:249708/1‑93 (MQ=255)
                                   aTGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAc                                                     <  2:7532656/93‑1 (MQ=255)
                                     gCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGc                                                   <  1:3145524/93‑1 (MQ=255)
                                     gCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGc                                                   <  2:1243088/93‑1 (MQ=255)
                                       aaCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtg                                                 >  2:7574639/1‑93 (MQ=255)
                                        aCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCtgt                                                >  2:6065550/1‑93 (MQ=255)
                                           ggCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTgcg                                             >  2:6512579/1‑93 (MQ=255)
                                             cccGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTgcgcg                                           <  2:3764079/93‑1 (MQ=255)
                                               cGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGca                                         <  2:7211044/93‑1 (MQ=255)
                                                 gCACGAACAGCCTCCTTTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcaca                                       <  1:1216021/93‑1 (MQ=255)
                                                 gCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcaca                                       >  2:3030402/1‑93 (MQ=255)
                                                 gCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcaca                                       <  2:224673/93‑1 (MQ=255)
                                                 gCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGcaca                                       <  2:5307778/93‑1 (MQ=255)
                                                  cACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAg                                      <  1:1328461/93‑1 (MQ=255)
                                                   aCGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAgg                                     <  2:6818727/93‑1 (MQ=255)
                                                    cGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGc                                    <  1:3670398/93‑1 (MQ=255)
                                                    cGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGc                                    <  1:761956/93‑1 (MQ=255)
                                                     gAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCa                                   <  1:1197408/93‑1 (MQ=255)
                                                     gAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCa                                   <  2:6462374/93‑1 (MQ=255)
                                                       aCAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGa                                 >  1:814381/1‑93 (MQ=255)
                                                        cAGCCTCCTGTTAATGTGAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaa                                <  2:7687088/93‑1 (MQ=255)
                                                         aGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaa                               >  1:2031579/1‑93 (MQ=255)
                                                          gCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaa                              >  1:2895217/1‑93 (MQ=255)
                                                          gCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaa                              <  1:795430/93‑1 (MQ=255)
                                                           cctcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGaaaaa                             >  2:3144642/1‑93 (MQ=255)
                                                             tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt                           >  1:5349417/1‑93 (MQ=255)
                                                             tcctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAt                           >  1:7504225/1‑93 (MQ=255)
                                                              cctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATg                          <  2:4461315/93‑1 (MQ=255)
                                                               ctGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATgg                         <  2:3912587/93‑1 (MQ=255)
                                                                tGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGc                        >  2:2141885/1‑93 (MQ=255)
                                                                tGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGc                        >  1:6464226/1‑93 (MQ=255)
                                                                tGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGc                        >  2:3667466/1‑93 (MQ=255)
                                                                 gTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCg                       >  2:6661064/1‑93 (MQ=255)
                                                                 gTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCg                       <  2:1330579/93‑1 (MQ=255)
                                                                 gTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCg                       >  1:4226950/1‑93 (MQ=255)
                                                                  ttAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCATAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGa                      >  1:3497280/1‑93 (MQ=255)
                                                                  ttAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGa                      >  2:3981139/1‑93 (MQ=255)
                                                                  ttAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGa                      <  2:3254605/93‑1 (MQ=255)
                                                                  ttAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGa                      >  2:5787869/1‑93 (MQ=255)
                                                                   tAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGaa                     <  1:5758652/93‑1 (MQ=255)
                                                                   tAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGaa                     <  2:3562802/93‑1 (MQ=255)
                                                                    aaTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAt                    >  1:5647760/1‑93 (MQ=255)
                                                                    aaTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAt                    <  1:4906244/93‑1 (MQ=255)
                                                                     aTGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATg                   <  1:5960743/93‑1 (MQ=255)
                                                                      tGTTAGCGAACTGGAGACAACGCATCGTCTTGTCACCGTAGAATATTATGATGAAAACGCTGTGTGCGCACAGGCAGTAAAAATGGCGAAAGa                  >  1:7046058/1‑93 (MQ=255)
                                                                       gTTAGCGGACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAg                 <  2:6716707/93‑1 (MQ=255)
                                                                       gTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAg                 <  1:5203987/93‑1 (MQ=255)
                                                                       gTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAg                 >  2:7335027/1‑93 (MQ=255)
                                                                       gTTAGCGAACTGGAGACAACGCATCGCCTTGTCAACGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAg                 >  2:4611466/1‑93 (MQ=255)
                                                                        ttAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGc                >  2:5555208/1‑93 (MQ=255)
                                                                           gCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaaa             >  1:5261820/1‑93 (MQ=255)
                                                                           gCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCaaa             >  1:7729595/1‑93 (MQ=255)
                                                                             gAACTTGATACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAtt           >  2:7039720/1‑93 (MQ=255)
                                                                             gAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAAtt           <  1:1458732/93‑1 (MQ=255)
                                                                               aCTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGc         <  2:1931454/93‑1 (MQ=255)
                                                                                 tGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTc       >  2:2362730/1‑93 (MQ=255)
                                                                                  ggAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCg      >  2:5541813/1‑93 (MQ=255)
                                                                                   gagaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGt     >  2:1051906/1‑93 (MQ=255)
                                                                                    agaCAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTc    <  2:6340593/93‑1 (MQ=255)
                                                                                          |                                                                                        
TAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAG  >  NC_000913/4103551‑4103729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 226 total aligned reads displayed.
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTG  >  NC_000913/4103548‑4103733
                                                                                             |                                                                                            
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC                                                                                              >  SRR4302543.2006583/1‑94 (MQ=60)
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC                                                                                              <  SRR4302543.810717/94‑1 (MQ=60)
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAAC                                                                                              <  SRR4302543.3670921/94‑1 (MQ=60)
 TTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACG                                                                                             <  SRR4302543.2572595/94‑1 (MQ=60)
    AACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCAT                                                                                          <  SRR4302543.3416664/94‑1 (MQ=60)
     ACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATC                                                                                         <  SRR4302543.6638588/94‑1 (MQ=60)
      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                        >  SRR4302543.7424024/1‑94 (MQ=60)
      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                        <  SRR4302543.3610988/94‑1 (MQ=60)
      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                        >  SRR4302543.3610092/1‑94 (MQ=60)
      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                        <  SRR4302543.7211973/94‑1 (MQ=60)
      CCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCG                                                                                        >  SRR4302543.2772078/1‑94 (MQ=60)
       CGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGCACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGC                                                                                       >  SRR4302543.3876762/1‑94 (MQ=60)
       CGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGC                                                                                       >  SRR4302543.247126/1‑94 (MQ=60)
        GAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCC                                                                                      >  SRR4302543.1163175/1‑94 (MQ=60)
        GAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCC                                                                                      <  SRR4302543.171378/94‑1 (MQ=60)
        GAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCC                                                                                      >  SRR4302543.4724804/1‑94 (MQ=60)
        GAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCC                                                                                      >  SRR4302543.1663467/1‑94 (MQ=60)
         AACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCT                                                                                     <  SRR4302543.1166995/94‑1 (MQ=60)
         AACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCT                                                                                     <  SRR4302543.5495148/94‑1 (MQ=60)
         AACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCT                                                                                     >  SRR4302543.3070979/1‑94 (MQ=60)
          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                    >  SRR4302543.2972240/1‑94 (MQ=60)
          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                    <  SRR4302543.4487930/94‑1 (MQ=60)
          ACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTT                                                                                    <  SRR4302543.7711374/94‑1 (MQ=60)
           CATCAGCGTCAGCAGATGCGAGATCTTATGCATCAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTG                                                                                   <  SRR4302543.239692/94‑1 (MQ=60)
           CATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTG                                                                                   <  SRR4302543.6275763/94‑1 (MQ=60)
           CATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTG                                                                                   <  SRR4302543.239693/94‑1 (MQ=60)
           CATCACCGTCAGCAGATGCGAGATCGTATGCATCAGGCCCGGCACTAACAGCCTCCTTTTTATGTTAGCGAACTGGAGACAACGCATCGCCTTG                                                                                   <  SRR4302543.239694/94‑1 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                  >  SRR4302543.5808576/1‑94 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                  <  SRR4302543.6569006/94‑1 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                  <  SRR4302543.1844265/94‑1 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                  >  SRR4302543.2363522/1‑94 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                  >  SRR4302543.3403367/1‑94 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCATGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGT                                                                                  >  SRR4302543.4061502/1‑94 (MQ=60)
            ATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCAGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTTAAGACAACACATCGCCATGT                                                                                  >  SRR4302543.1929646/1‑94 (MQ=60)
             TCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTC                                                                                 <  SRR4302543.4029243/94‑1 (MQ=60)
             TAAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTC                                                                                 <  SRR4302543.1905676/94‑1 (MQ=60)
             ACAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTC                                                                                 <  SRR4302543.161848/94‑1 (MQ=60)
                GCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACC                                                                              <  SRR4302543.1797938/94‑1 (MQ=60)
                GCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACC                                                                              <  SRR4302543.6360575/94‑1 (MQ=60)
                 CGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCG                                                                             >  SRR4302543.5349479/1‑94 (MQ=60)
                 CGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCG                                                                             >  SRR4302543.5349478/1‑94 (MQ=60)
                 CGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCG                                                                             <  SRR4302543.4717983/94‑1 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                            >  SRR4302543.2246203/1‑94 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                            >  SRR4302543.7031725/1‑94 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                            >  SRR4302543.5253245/1‑94 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                            >  SRR4302543.409848/1‑94 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                            >  SRR4302543.2354264/1‑94 (MQ=60)
                  GTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGC                                                                            >  SRR4302543.3897518/1‑94 (MQ=60)
                   TCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCA                                                                           >  SRR4302543.1603136/1‑94 (MQ=60)
                   TCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCA                                                                           <  SRR4302543.2637500/94‑1 (MQ=60)
                   TCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTCGAGACAACGCATCGCCTTGTCACCGCA                                                                           >  SRR4302543.6018306/1‑94 (MQ=60)
                    CAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAG                                                                          <  SRR4302543.3299039/94‑1 (MQ=60)
                    CAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAG                                                                          <  SRR4302543.3220101/94‑1 (MQ=60)
                    CAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAG                                                                          >  SRR4302543.1152857/1‑94 (MQ=60)
                     AGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGA                                                                         >  SRR4302543.3675901/1‑94 (MQ=60)
                     AGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGA                                                                         <  SRR4302543.5606699/94‑1 (MQ=60)
                     AGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGA                                                                         <  SRR4302543.5606700/94‑1 (MQ=60)
                     AGCAGATGCGAGATCTTATGCAACAGGCCCGG‑‑CGCACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCACCTCCTTGTCACaccacaga                                                                       >  SRR4302543.878171/1‑86 (MQ=60)
                      GCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAA                                                                        <  SRR4302543.4236424/94‑1 (MQ=60)
                        AGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAA                                                                      >  SRR4302543.7864740/1‑94 (MQ=60)
                         GATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAAT                                                                     >  SRR4302543.6701047/1‑94 (MQ=60)
                          ATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATT                                                                    >  SRR4302543.4379660/1‑94 (MQ=60)
                          ATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATT                                                                    <  SRR4302543.7272820/94‑1 (MQ=60)
                           TGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTT                                                                   >  SRR4302543.1514969/1‑94 (MQ=60)
                            GCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTT                                                                  >  SRR4302543.7894048/1‑94 (MQ=60)
                             CGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTG                                                                 <  SRR4302543.2159233/94‑1 (MQ=60)
                             CGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTG                                                                 >  SRR4302543.5595658/1‑94 (MQ=60)
                              GAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGA                                                                >  SRR4302543.7831022/1‑94 (MQ=60)
                              GAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGA                                                                >  SRR4302543.7831023/1‑94 (MQ=60)
                               AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT                                                               <  SRR4302543.1348465/94‑1 (MQ=60)
                               AGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGAT                                                               <  SRR4302543.7400855/94‑1 (MQ=60)
                                GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG                                                              >  SRR4302543.1214392/1‑94 (MQ=60)
                                GATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATG                                                              <  SRR4302543.3952969/94‑1 (MQ=60)
                                 ATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGA                                                             <  SRR4302543.2361700/94‑1 (MQ=60)
                                  TCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAA                                                            >  SRR4302543.4980576/1‑94 (MQ=60)
                                   CTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAA                                                           >  SRR4302543.189859/1‑94 (MQ=60)
                                   CTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAA                                                           >  SRR4302543.7458845/1‑94 (MQ=60)
                                    TTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAA                                                          >  SRR4302543.6741519/1‑94 (MQ=60)
                                    TTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAA                                                          >  SRR4302543.5075549/1‑94 (MQ=60)
                                    TTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAA                                                          <  SRR4302543.7632411/94‑1 (MQ=60)
                                    TTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAA                                                          >  SRR4302543.6166336/1‑94 (MQ=60)
                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC                                                         <  SRR4302543.482116/94‑1 (MQ=60)
                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC                                                         <  SRR4302543.5684631/94‑1 (MQ=60)
                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC                                                         <  SRR4302543.1050915/94‑1 (MQ=60)
                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC                                                         <  SRR4302543.260514/94‑1 (MQ=60)
                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAAC                                                         <  SRR4302543.2699228/94‑1 (MQ=60)
                                     TATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTGGTCCCCGCAGAAAATTTTGATGAAAAC                                                         <  SRR4302543.1050913/94‑1 (MQ=60)
                                        GCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCT                                                      <  SRR4302543.7979965/94‑1 (MQ=60)
                                        GCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCT                                                      >  SRR4302543.38324/1‑94 (MQ=60)
                                        GCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCT                                                      <  SRR4302543.3173814/94‑1 (MQ=60)
                                         CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG                                                     <  SRR4302543.3677152/94‑1 (MQ=60)
                                         CAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTG                                                     >  SRR4302543.1091498/1‑94 (MQ=60)
                                           ACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTG                                                   <  SRR4302543.3305764/94‑1 (MQ=60)
                                            CAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGC                                                  <  SRR4302543.6544298/94‑1 (MQ=60)
                                             AGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCG                                                 >  SRR4302543.7621549/1‑94 (MQ=60)
                                             AGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCG                                                 >  SRR4302543.3757515/1‑94 (MQ=60)
                                              GGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGC                                                >  SRR4302543.5981021/1‑94 (MQ=60)
                                               GCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCG                                               <  SRR4302543.3130071/94‑1 (MQ=60)
                                                CCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGC                                              >  SRR4302543.1217873/1‑94 (MQ=60)
                                                 CCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCA                                             >  SRR4302543.3073402/1‑94 (MQ=60)
                                                  CGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCAC                                            >  SRR4302543.4807562/1‑94 (MQ=60)
                                                  CGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCAC                                            >  SRR4302543.5255369/1‑94 (MQ=60)
                                                  CGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCAC                                            <  SRR4302543.3235589/94‑1 (MQ=60)
                                                   GGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACA                                           >  SRR4302543.1078874/1‑94 (MQ=60)
                                                    GCACGAACAGCCTCCTTTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAG                                          <  SRR4302543.1226948/94‑1 (MQ=60)
                                                    GCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAG                                          <  SRR4302543.3473758/94‑1 (MQ=60)
                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATTGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGCGCGCGCACCGG                                         >  SRR4302543.567132/1‑94 (MQ=60)
                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCTCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGC                                         >  SRR4302543.3851799/1‑94 (MQ=60)
                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                         >  SRR4302543.5619523/1‑94 (MQ=60)
                                                     CACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGG                                         <  SRR4302543.7170456/94‑1 (MQ=60)
                                                      ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC                                        >  SRR4302543.1258307/1‑94 (MQ=60)
                                                      ACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGC                                        <  SRR4302543.2778942/94‑1 (MQ=60)
                                                       CGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCA                                       <  SRR4302543.768674/94‑1 (MQ=60)
                                                       CGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCA                                       <  SRR4302543.3702624/94‑1 (MQ=60)
                                                       CGAACAGCCTCCTGATAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCAGTGCGCGCACATGCA                                       >  SRR4302543.1351047/1‑94 (MQ=60)
                                                        GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG                                      >  SRR4302543.1214069/1‑94 (MQ=60)
                                                        GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG                                      <  SRR4302543.1208191/94‑1 (MQ=60)
                                                        GAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAG                                      <  SRR4302543.3922846/94‑1 (MQ=60)
                                                         AACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGA                                     >  SRR4302543.821552/1‑94 (MQ=60)
                                                         AACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGA                                     >  SRR4302543.821551/1‑94 (MQ=60)
                                                          ACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAA                                    >  SRR4302543.3607184/1‑94 (MQ=60)
                                                          ACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAA                                    <  SRR4302543.7842958/94‑1 (MQ=60)
                                                           CAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAA                                   >  SRR4302543.2049833/1‑94 (MQ=60)
                                                           CAGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAA                                   >  SRR4302543.1728236/1‑94 (MQ=60)
                                                            AGCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAA                                  >  SRR4302543.2921541/1‑94 (MQ=60)
                                                             CCCTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAA                                 <  SRR4302543.802422/94‑1 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                               >  SRR4302543.1545922/1‑94 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                               >  SRR4302543.7575961/1‑94 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                               >  SRR4302543.4896231/1‑94 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                               <  SRR4302543.5888432/94‑1 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                               >  SRR4302543.5397827/1‑94 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                               <  SRR4302543.6968642/94‑1 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAT                               >  SRR4302543.7395273/1‑94 (MQ=60)
                                                               CTCCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAAG                               >  SRR4302543.5553427/1‑94 (MQ=60)
                                                                 CCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGG                             >  SRR4302543.3310588/1‑94 (MQ=60)
                                                                 CCTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGG                             >  SRR4302543.7452457/1‑94 (MQ=60)
                                                                  CTGTTAATGTTAGCGAACTGGATACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGC                            >  SRR4302543.1415241/1‑94 (MQ=60)
                                                                  CTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGC                            >  SRR4302543.711781/1‑94 (MQ=60)
                                                                  CTGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGC                            >  SRR4302543.6525125/1‑94 (MQ=60)
                                                                   TGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCG                           <  SRR4302543.7902032/94‑1 (MQ=60)
                                                                   TGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCG                           >  SRR4302543.4899363/1‑94 (MQ=60)
                                                                   TGTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCG                           >  SRR4302543.4265292/1‑94 (MQ=60)
                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCATAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                          >  SRR4302543.3528565/1‑94 (MQ=60)
                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                          <  SRR4302543.7713899/94‑1 (MQ=60)
                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                          <  SRR4302543.1276606/94‑1 (MQ=60)
                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                          >  SRR4302543.6329371/1‑94 (MQ=60)
                                                                    GTTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                          <  SRR4302543.63961/94‑1 (MQ=60)
                                                                    GTGAATCTTAGCCAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGA                          <  SRR4302543.63959/94‑1 (MQ=60)
                                                                     TTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGTCGAA                         >  SRR4302543.2529336/1‑94 (MQ=60)
                                                                     TTAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAA                         <  SRR4302543.702714/94‑1 (MQ=60)
                                                                      TAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAT                        <  SRR4302543.2143354/94‑1 (MQ=60)
                                                                      TAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAT                        <  SRR4302543.1654971/94‑1 (MQ=60)
                                                                      TAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAT                        <  SRR4302543.3171894/94‑1 (MQ=60)
                                                                      TAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAT                        <  SRR4302543.5811120/94‑1 (MQ=60)
                                                                      TAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAT                        >  SRR4302543.5699246/1‑94 (MQ=60)
                                                                      TAATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAAT                        <  SRR4302543.2559052/94‑1 (MQ=60)
                                                                       AATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATG                       <  SRR4302543.4950959/94‑1 (MQ=60)
                                                                       AATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATG                       <  SRR4302543.2612572/94‑1 (MQ=60)
                                                                        TTGTTAGCGAACTGGAGACAACGCATCGTCTTGTCACCGTAGAATATTATGATGAAAACGCTGTGTGCGCACAGGCAGTAAAAATGGCGAAAGA                      >  SRR4302543.7114308/1‑94 (MQ=60)
                                                                        ATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGA                      >  SRR4302543.6321775/1‑94 (MQ=60)
                                                                        ATGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGA                      <  SRR4302543.6015318/94‑1 (MQ=60)
                                                                         TGTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAG                     <  SRR4302543.409835/94‑1 (MQ=60)
                                                                          GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC                    >  SRR4302543.3363128/1‑94 (MQ=60)
                                                                          GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC                    >  SRR4302543.3899402/1‑94 (MQ=60)
                                                                          GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGC                    <  SRR4302543.5250898/94‑1 (MQ=60)
                                                                          GTTAGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGA                    >  SRR4302543.5699836/1‑94 (MQ=60)
                                                                           TTAGCGAACTGGAGACAACGCATAACCTAGTCACCGCAGAAGATTTTGATGAAAACGCTGAGCGCGCACAGGCCGAAAAAATGGCGAATGAGCA                   <  SRR4302543.7099824/94‑1 (MQ=60)
                                                                             AGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAA                 >  SRR4302543.5309288/1‑94 (MQ=60)
                                                                             AGCGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAA                 >  SRR4302543.7802653/1‑94 (MQ=60)
                                                                               gaAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATT               <  SRR4302543.4468363/92‑1 (MQ=60)
                                                                               CGACCTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATT               <  SRR4302543.4468362/94‑1 (MQ=60)
                                                                               CGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATT               <  SRR4302543.3021249/94‑1 (MQ=60)
                                                                               CGAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATT               <  SRR4302543.5987951/94‑1 (MQ=60)
                                                                                GAACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTG              <  SRR4302543.1471891/94‑1 (MQ=60)
                                                                                 AACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGC             >  SRR4302543.6585590/1‑94 (MQ=60)
                                                                                 AACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGC             >  SRR4302543.6338506/1‑94 (MQ=60)
                                                                                  ACTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCT            >  SRR4302543.5390191/1‑94 (MQ=60)
                                                                                   CTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGGAAACATGGCGAATGAGCAACTTGCTG           >  SRR4302543.818932/1‑94 (MQ=60)
                                                                                   CTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTC           <  SRR4302543.2780023/94‑1 (MQ=60)
                                                                                   CTGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTC           >  SRR4302543.4766764/1‑94 (MQ=60)
                                                                                    TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATTAGCAAATTGCTCG          <  SRR4302543.5079287/94‑1 (MQ=60)
                                                                                    TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG          <  SRR4302543.7492345/94‑1 (MQ=60)
                                                                                    TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG          <  SRR4302543.85918/94‑1 (MQ=60)
                                                                                    TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG          >  SRR4302543.2131063/1‑94 (MQ=60)
                                                                                    TGGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCG          <  SRR4302543.1761955/94‑1 (MQ=60)
                                                                                     GGAGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGT         <  SRR4302543.4251047/94‑1 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA       >  SRR4302543.7663548/1‑94 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA       >  SRR4302543.3557110/1‑94 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA       >  SRR4302543.4680620/1‑94 (MQ=60)
                                                                                       AGACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCA       >  SRR4302543.4548872/1‑94 (MQ=60)
                                                                                         ACAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGG     <  SRR4302543.1239746/94‑1 (MQ=60)
                                                                                          CAACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGT    >  SRR4302543.4121663/1‑94 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT   <  SRR4302543.2611200/94‑1 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT   <  SRR4302543.7150986/94‑1 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT   <  SRR4302543.1062242/94‑1 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT   >  SRR4302543.3052072/1‑94 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT   >  SRR4302543.5144777/1‑94 (MQ=60)
                                                                                           AACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT   <  SRR4302543.2400084/94‑1 (MQ=60)
                                                                                           AACGCAGCGCCTTGTCAGCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTT   <  SRR4302543.7150983/94‑1 (MQ=60)
                                                                                            ACGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTG  <  SRR4302543.3981916/94‑1 (MQ=60)
                                                                                             |                                                                                            
GTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGAACAGCCTCCTGTTAATGTTAGCGAACTGGAGACAATGCATCGCCTTGTCACCGCAGAAAATTTTGATGAAAACGCTGTGCGCGCACAGGCAGAAAAAATGGCGAATGAGCAAATTGCTCGTCAGGTTG  >  NC_000913/4103548‑4103733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑