Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,158,977	T→C	V111A (GTC→GCC)	yijC →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,158,977	0	T	C	100.0%	675.7 / NA	218	V111A (GTC→GCC)	yijC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/107); total (111/107)

Only 100 of 227 total aligned reads displayed.

TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG  >  NC_000913/4158887‑4159066

tGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGcct                                                                                         >  2:2097884/1‑93 (MQ=255)

 ggTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGcctc                                                                                        <  2:4182781/93‑1 (MQ=255)

   ttGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCca                                                                                      <  2:4649220/93‑1 (MQ=255)

   ttGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCca                                                                                      <  2:4398428/93‑1 (MQ=255)

    tgatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcac                                                                                     <  2:4428610/93‑1 (MQ=255)

     gatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcaca                                                                                    <  2:90530/93‑1 (MQ=255)

     gatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcaca                                                                                    <  1:4469306/93‑1 (MQ=255)

      atgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAt                                                                                   <  1:1570616/93‑1 (MQ=255)

       tgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAtt                                                                                  >  1:1190820/1‑93 (MQ=255)

       tgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAtt                                                                                  >  2:1590792/1‑93 (MQ=255)

       tgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGGGTGATCCGCACCTCGGCCTCCACAtt                                                                                  >  1:4507044/1‑93 (MQ=255)

         agagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTa                                                                                <  1:4123818/93‑1 (MQ=255)

           agCGGTTTAATGCTACGCCAACTCATGCGCCAGTCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATg                                                                              <  1:3264484/93‑1 (MQ=255)

           agCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATg                                                                              <  2:4096783/93‑1 (MQ=255)

            gCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATgg                                                                             >  2:3410502/1‑93 (MQ=255)

            gCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATgg                                                                             >  1:1956348/1‑93 (MQ=255)

             cGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGa                                                                            <  1:3286853/93‑1 (MQ=255)

             cGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGa                                                                            <  2:4339409/93‑1 (MQ=255)

             cGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGa                                                                            <  2:1160229/93‑1 (MQ=255)

              ggTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAg                                                                           >  1:1454578/1‑93 (MQ=255)

               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          <  2:3830628/93‑1 (MQ=255)

               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          <  1:4279092/93‑1 (MQ=255)

                 ttAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTc                                                                        <  1:1025247/93‑1 (MQ=255)

                  tAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCa                                                                       <  2:36353/93‑1 (MQ=255)

                  tAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCa                                                                       <  1:3857104/93‑1 (MQ=255)

                  tAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCa                                                                       >  2:761233/1‑93 (MQ=255)

                    aTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATc                                                                     >  1:786370/1‑93 (MQ=255)

                    aTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATc                                                                     <  2:1525418/93‑1 (MQ=255)

                      gCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCgg                                                                   >  1:1085581/1‑93 (MQ=255)

                        tACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGta                                                                 <  2:3734764/93‑1 (MQ=255)

                        tACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGta                                                                 >  2:2975215/1‑93 (MQ=255)

                        tACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGta                                                                 <  2:1366737/93‑1 (MQ=255)

                        tACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGta                                                                 >  2:1029461/1‑93 (MQ=255)

                         aCGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaa                                                                <  2:4546080/93‑1 (MQ=255)

                         aCGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaa                                                                <  2:2041825/93‑1 (MQ=255)

                           gCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaata                                                              <  1:2892191/93‑1 (MQ=255)

                           gCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaata                                                              <  1:2209917/93‑1 (MQ=255)

                           gCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaata                                                              <  1:2010818/93‑1 (MQ=255)

                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGCTCATCGGtaataa                                                             >  1:2675895/1‑93 (MQ=255)

                             cAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTaataat                                                            <  2:4270321/93‑1 (MQ=255)

                             cAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTaataat                                                            >  1:2491659/1‑93 (MQ=255)

                              aaCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATc                                                           >  2:3853065/1‑93 (MQ=255)

                              aaCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATc                                                           >  1:1801849/1‑93 (MQ=255)

                              aaCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATc                                                           >  2:3070208/1‑93 (MQ=255)

                               aCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATcc                                                          <  2:1968942/93‑1 (MQ=255)

                               aCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATcc                                                          <  2:3094600/93‑1 (MQ=255)

                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         >  1:4621207/1‑93 (MQ=255)

                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         >  2:3887900/1‑93 (MQ=255)

                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  2:2406229/93‑1 (MQ=255)

                                    tGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACg                                                     >  2:3210141/1‑93 (MQ=255)

                                    tGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACg                                                     >  1:277293/1‑93 (MQ=255)

                                     gcgcCAGGCGCGTCAGCGTATCGCCAAAGCCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGc                                                    <  1:4238124/93‑1 (MQ=255)

                                      cgcCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGcc                                                   <  1:188253/93‑1 (MQ=255)

                                        ccAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCtt                                                 <  1:3411583/93‑1 (MQ=255)

                                         cAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                <  2:1002379/93‑1 (MQ=255)

                                          aGGCTCATCAACGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCTTCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTcc                                               <  2:311352/93‑1 (MQ=255)

                                          aGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTcc                                               >  2:917742/1‑93 (MQ=255)

                                           ggCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCg                                              >  1:1827998/1‑93 (MQ=255)

                                           ggCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCg                                              >  1:2957935/1‑93 (MQ=255)

                                             cgcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGt                                            <  1:868695/93‑1 (MQ=255)

                                              gcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtt                                           >  2:2255812/1‑93 (MQ=255)

                                                 tcgtcGTATCGCCAAAGGCGGGACGTTGATCCGCCCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        <  2:479980/89‑1 (MQ=255)

                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  2:2288270/1‑93 (MQ=255)

                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  2:4002108/1‑93 (MQ=255)

                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  1:1539403/1‑93 (MQ=255)

                                                  cAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatta                                       <  2:1449310/93‑1 (MQ=255)

                                                   aGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTtattat                                      >  1:4289080/1‑93 (MQ=255)

                                                    gCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTTGGCCTTCACAATTATGGAGTTCATCGGTAATAATCCTATCGCCTTCCGGTTattatt                                     >  2:3022852/1‑93 (MQ=255)

                                                    gCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTattatt                                     <  1:2085743/93‑1 (MQ=255)

                                                     cGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTg                                    <  2:798376/93‑1 (MQ=255)

                                                     cGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTg                                    <  2:2443713/93‑1 (MQ=255)

                                                      gTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCATCCACATTTAAGGAGTTCATCGGTAATAATCCTCACGCATTCCAGTTATTATTgg                                   >  2:2865713/1‑92 (MQ=255)

                                                       tATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCg                                  <  2:4614566/93‑1 (MQ=255)

                                                         tCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCggg                                >  1:1426999/1‑93 (MQ=255)

                                                         tCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCggg                                >  1:3748804/1‑93 (MQ=255)

                                                         tCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCggg                                <  1:1217398/93‑1 (MQ=255)

                                                          cGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGa                               >  1:1726703/1‑93 (MQ=255)

                                                           gCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGac                              >  2:2113922/1‑92 (MQ=255)

                                                            ccAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAc                             <  1:1696044/93‑1 (MQ=255)

                                                            ccAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAc                             >  1:2569675/1‑93 (MQ=255)

                                                            ccAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAc                             >  2:2373947/1‑93 (MQ=255)

                                                             cAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACg                            >  2:2224993/1‑93 (MQ=255)

                                                               aaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCt                          >  1:321988/1‑93 (MQ=255)

                                                               aaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCt                          >  2:2660575/1‑93 (MQ=255)

                                                                    gggAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGGAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGc                     >  1:4371107/1‑93 (MQ=255)

                                                                     ggAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCa                    >  1:760016/1‑93 (MQ=255)

                                                                     ggAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCa                    >  1:2814336/1‑93 (MQ=255)

                                                                         tgtgATCCGCACCTCGGCTTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTc                <  1:70687/93‑1 (MQ=255)

                                                                          gtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTcc               <  2:4124046/93‑1 (MQ=255)

                                                                           tgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCg              <  1:2542375/93‑1 (MQ=255)

                                                                           tgATCCGCACCTCGGCCTCCACATTTATGGAGCTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCg              >  1:3762234/1‑93 (MQ=255)

                                                                            gATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGc             <  2:1080475/93‑1 (MQ=255)

                                                                             aTCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCt            >  2:2085300/1‑93 (MQ=255)

                                                                             aTCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCt            >  2:2207133/1‑93 (MQ=255)

                                                                                cGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCg         >  2:366608/1‑93 (MQ=255)

                                                                                   aCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGttt      >  2:2955473/1‑93 (MQ=255)

                                                                                   aCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGctt      >  1:3667502/1‑93 (MQ=255)

                                                                                    ccTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTc     >  2:549219/1‑93 (MQ=255)

                                                                                      tCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGt   <  2:3137520/93‑1 (MQ=255)

                                                                                      tCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGt   >  2:846307/1‑93 (MQ=255)

TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG  >  NC_000913/4158887‑4159066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC  >  NC_000913/4158884‑4159068

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGC                                                                                             >  SRR4302535.1895810/1‑94 (MQ=60)

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGC                                                                                             >  SRR4302535.3138259/1‑94 (MQ=60)

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGC                                                                                             >  SRR4302535.3709879/1‑94 (MQ=60)

 CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCC                                                                                            >  SRR4302535.716133/1‑94 (MQ=60)

  ATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCT                                                                                           <  SRR4302535.289843/94‑1 (MQ=60)

        GATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAT                                                                                     <  SRR4302535.4499973/94‑1 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                    <  SRR4302535.2390928/94‑1 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                    >  SRR4302535.1199345/1‑94 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                    <  SRR4302535.1581955/94‑1 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                    >  SRR4302535.404329/1‑94 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGGGTGATCCGCACCTCGGCCTCCACATT                                                                                    >  SRR4302535.4537978/1‑94 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                 >  SRR4302535.3851062/1‑94 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                 <  SRR4302535.3373825/94‑1 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                 <  SRR4302535.4152037/94‑1 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                 <  SRR4302535.4513175/94‑1 (MQ=60)

             GAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATG                                                                                >  SRR4302535.781068/1‑94 (MQ=60)

             GAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATG                                                                                <  SRR4302535.1078868/94‑1 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGTCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                               <  SRR4302535.3287156/94‑1 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                               >  SRR4302535.3777223/1‑94 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                               >  SRR4302535.4434393/1‑94 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                               >  SRR4302535.3304527/1‑94 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                               >  SRR4302535.2048927/1‑94 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                               >  SRR4302535.1970427/1‑94 (MQ=60)

               GCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGA                                                                              <  SRR4302535.1235806/94‑1 (MQ=60)

                CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                             >  SRR4302535.1464988/1‑94 (MQ=60)

                CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                             <  SRR4302535.1677853/94‑1 (MQ=60)

                CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                             <  SRR4302535.3309703/94‑1 (MQ=60)

                 GGTTTAATGCTACGCCAACTCATGCGCCAGTCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                            >  SRR4302535.4316078/1‑94 (MQ=60)

                 GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                            <  SRR4302535.2912489/94‑1 (MQ=60)

                 GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                            <  SRR4302535.1405078/94‑1 (MQ=60)

                  GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTT                                                                           <  SRR4302535.4308374/94‑1 (MQ=60)

                  GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTT                                                                           <  SRR4302535.4412726/94‑1 (MQ=60)

                    TTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCA                                                                         <  SRR4302535.1479105/94‑1 (MQ=60)

                    TTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCA                                                                         <  SRR4302535.1032531/94‑1 (MQ=60)

                    TTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCA                                                                         <  SRR4302535.2946442/94‑1 (MQ=60)

                    TTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCA                                                                         <  SRR4302535.3136434/94‑1 (MQ=60)

                     TAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                        <  SRR4302535.3883657/94‑1 (MQ=60)

                     TAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                        >  SRR4302535.727560/1‑94 (MQ=60)

                      AATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATC                                                                       >  SRR4302535.791882/1‑94 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                      >  SRR4302535.3703324/1‑94 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                      <  SRR4302535.4337873/94‑1 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATAG                                                                      >  SRR4302535.1217779/1‑94 (MQ=60)

                        TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                     >  SRR4302535.1093296/1‑94 (MQ=60)

                        TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                     <  SRR4302535.155600/94‑1 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                               <  SRR4302535.2225660/94‑1 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                               <  SRR4302535.2025294/94‑1 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                               <  SRR4302535.2912650/94‑1 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                               <  SRR4302535.810236/94‑1 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGCTCATCGGTAATAA                                                               >  SRR4302535.2695041/1‑94 (MQ=60)

                               CCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAAT                                                              >  SRR4302535.2509639/1‑94 (MQ=60)

                                CAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATC                                                             >  SRR4302535.1814874/1‑94 (MQ=60)

                                 AACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCC                                                            >  SRR4302535.1873558/1‑94 (MQ=60)

                                  ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                           >  SRR4302535.4652603/1‑94 (MQ=60)

                                  ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                           >  SRR4302535.1878881/1‑94 (MQ=60)

                                   CTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTA                                                          <  SRR4302535.945874/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                        <  SRR4302535.173275/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                        <  SRR4302535.3285454/94‑1 (MQ=60)

                                      ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                       >  SRR4302535.279230/1‑94 (MQ=60)

                                      ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                       >  SRR4302535.1761120/1‑94 (MQ=60)

                                        GCGCCAGGCGCGTCAGCGTATCGCCAAAGCCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCC                                                     <  SRR4302535.4267125/94‑1 (MQ=60)

                                         CGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCT                                                    <  SRR4302535.189556/94‑1 (MQ=60)

                                          GCCAGGCGCGTCAGCGTATCGCTAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTT                                                   <  SRR4302535.1274517/94‑1 (MQ=60)

                                          GCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTT                                                   >  SRR4302535.496241/1‑94 (MQ=60)

                                          GCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGGGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTT                                                   >  SRR4302535.4628370/1‑94 (MQ=60)

                                           CCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTC                                                  >  SRR4302535.3729216/1‑94 (MQ=60)

                                           CCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTC                                                  <  SRR4302535.3435319/94‑1 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                >  SRR4302535.1841198/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                >  SRR4302535.3481837/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                <  SRR4302535.2648053/94‑1 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                >  SRR4302535.2978708/1‑94 (MQ=60)

                                                CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                             <  SRR4302535.874841/94‑1 (MQ=60)

                                                CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                             >  SRR4302535.4680868/1‑94 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                          >  SRR4302535.1550501/1‑94 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGATCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                          >  SRR4302535.3265864/1‑94 (MQ=60)

                                                    TCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTA                                         <  SRR4302535.255966/94‑1 (MQ=60)

                                                    TCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTA                                         <  SRR4302535.4188070/94‑1 (MQ=60)

                                                     CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                        >  SRR4302535.4318417/1‑94 (MQ=60)

                                                       GCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTG                                      <  SRR4302535.2100763/94‑1 (MQ=60)

                                                       GCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTG                                      >  SRR4302535.2768170/1‑94 (MQ=60)

                                                        CGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGC                                     >  SRR4302535.2003695/1‑94 (MQ=60)

                                                        CGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGC                                     >  SRR4302535.2584009/1‑94 (MQ=60)

                                                           ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                  <  SRR4302535.91716/94‑1 (MQ=60)

                                                           ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                  >  SRR4302535.3774743/1‑94 (MQ=60)

                                                           ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                  >  SRR4302535.1437185/1‑94 (MQ=60)

                                                            TCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGA                                 <  SRR4302535.1226130/94‑1 (MQ=60)

                                                            TCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGA                                 >  SRR4302535.1739187/1‑94 (MQ=60)

                                                             CGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAA                                >  SRR4302535.2571849/1‑94 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                               <  SRR4302535.1833669/94‑1 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                               <  SRR4302535.206135/94‑1 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                               >  SRR4302535.2131626/1‑94 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                               >  SRR4302535.2588155/1‑94 (MQ=60)

                                                               CCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACG                              <  SRR4302535.1708301/94‑1 (MQ=60)

                                                               CCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACG                              <  SRR4302535.1169676/94‑1 (MQ=60)

                                                               CCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACG                              <  SRR4302535.1450992/94‑1 (MQ=60)

                                                                 AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCT                            >  SRR4302535.324217/1‑94 (MQ=60)

                                                                      CGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGGAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGC                       >  SRR4302535.4401017/1‑94 (MQ=60)

                                                                       GGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                      >  SRR4302535.765370/1‑94 (MQ=60)

                                                                       GGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                      >  SRR4302535.2834335/1‑94 (MQ=60)

                                                                            TGTGATCCGCACCTCGGCTTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                 <  SRR4302535.71205/94‑1 (MQ=60)

                                                                            TGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                 >  SRR4302535.4246378/1‑94 (MQ=60)

                                                                             GTGATCCGCACCTCGGCCTCCACATTTATGGAGCTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCG                >  SRR4302535.3788229/1‑94 (MQ=60)

                                                                              TGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGC               <  SRR4302535.2560685/94‑1 (MQ=60)

                                                                                  CCGCACCTCGTCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCG           <  SRR4302535.4280928/94‑1 (MQ=60)

                                                                                   CGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGT          >  SRR4302535.2867394/1‑94 (MQ=60)

                                                                                    GCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTT         >  SRR4302535.2799300/1‑94 (MQ=60)

                                                                                     CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT        >  SRR4302535.1607980/1‑94 (MQ=60)

                                                                                     CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGCTT        >  SRR4302535.3692900/1‑94 (MQ=60)

                                                                                       CCTCGGCCTCCACATTTATGGAGTTGATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCG      <  SRR4302535.1910281/94‑1 (MQ=60)

                                                                                          CGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCATTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGC   >  SRR4302535.2531356/1‑94 (MQ=60)

                                                                                           GGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC  >  SRR4302535.3139799/1‑94 (MQ=60)

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC  >  NC_000913/4158884‑4159068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`