Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,158,977	T→C	V111A (GTC→GCC)	yijC →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,158,977	0	T	C	99.4%	979.9 / ‑4.1	319	V111A (GTC→GCC)	yijC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (157/160); total (157/162)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01

Only 100 of 331 total aligned reads displayed.

TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG  >  NC_000913/4158887‑4159066

   ttGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGAGGGATCCGCACCTCGGCCTCca                                                                                      >  2:6066762/1‑93 (MQ=255)

    tgatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcac                                                                                     <  1:6700669/93‑1 (MQ=255)

    tgatgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCcac                                                                                     <  2:1551364/93‑1 (MQ=255)

      atgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAt                                                                                   >  1:1155596/1‑93 (MQ=255)

      atgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAt                                                                                   >  1:3690203/1‑93 (MQ=255)

       tgaGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAtt                                                                                  >  2:2515734/1‑93 (MQ=255)

         agagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTa                                                                                <  1:3736729/93‑1 (MQ=255)

           agCGTTTTAATGCTACGCCACCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATg                                                                              <  1:5352400/93‑1 (MQ=255)

           agCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATg                                                                              <  1:264064/93‑1 (MQ=255)

            gCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATgg                                                                             <  2:2226275/93‑1 (MQ=255)

            gCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATgg                                                                             >  1:3316255/1‑93 (MQ=255)

             cGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGa                                                                            <  2:2044567/93‑1 (MQ=255)

               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          >  1:5049875/1‑93 (MQ=255)

               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          <  2:3935337/93‑1 (MQ=255)

               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          <  1:3467086/93‑1 (MQ=255)

                  tAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCa                                                                       <  1:1254725/93‑1 (MQ=255)

                  tAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCa                                                                       <  2:4115995/93‑1 (MQ=255)

                  tAATGCTACGCCAACTCATGCCCCAGGCGCGTCAGCTTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGACCTCCACATTTATGGAGTTCa                                                                       <  1:314734/93‑1 (MQ=255)

                   aaTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAt                                                                      >  1:6236393/1‑93 (MQ=255)

                    aTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATc                                                                     <  1:3413556/93‑1 (MQ=255)

                     tGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTGCACATTTATGGAGGTCATCg                                                                    >  1:250017/1‑93 (MQ=255)

                     agCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCg                                                                    <  1:6796824/92‑1 (MQ=255)

                          cGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaat                                                               <  2:7210576/93‑1 (MQ=255)

                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaataa                                                             <  1:7628017/93‑1 (MQ=255)

                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaataa                                                             >  2:7129113/1‑93 (MQ=255)

                             cAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTaataat                                                            <  2:5470399/93‑1 (MQ=255)

                             cAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTaataat                                                            <  2:5887386/93‑1 (MQ=255)

                              aaCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATc                                                           >  1:4384227/1‑93 (MQ=255)

                                cTCATGCGCCAGGCGCGTCAGGGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         >  2:5012950/1‑93 (MQ=255)

                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         <  1:5714438/93‑1 (MQ=255)

                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  2:7054002/93‑1 (MQ=255)

                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  1:752664/93‑1 (MQ=255)

                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  1:7406394/93‑1 (MQ=255)

                                   aTGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAc                                                      <  1:7362610/93‑1 (MQ=255)

                                       gcCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCt                                                  >  2:100990/1‑93 (MQ=255)

                                       gcCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCt                                                  >  1:1870959/1‑93 (MQ=255)

                                       gcCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCt                                                  <  2:3569053/93‑1 (MQ=255)

                                        ccAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCtt                                                 >  2:2422786/1‑93 (MQ=255)

                                        ccAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCtt                                                 >  2:5172873/1‑93 (MQ=255)

                                        ccAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCtt                                                 <  2:7497307/93‑1 (MQ=255)

                                         cAGGCGCGTCAGCGTATCGCCAAGGGCGGGAGTGTGATCCGCGCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                <  2:858212/93‑1 (MQ=255)

                                         cAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                <  2:2804486/93‑1 (MQ=255)

                                          aGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTcc                                               <  2:3069578/93‑1 (MQ=255)

                                             cgcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGt                                            <  1:2882889/93‑1 (MQ=255)

                                               cgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtta                                          <  1:6461433/93‑1 (MQ=255)

                                               cgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtta                                          <  1:1488616/93‑1 (MQ=255)

                                                gTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttat                                         >  1:4084482/1‑93 (MQ=255)

                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  1:2010429/1‑93 (MQ=255)

                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  1:2076056/1‑93 (MQ=255)

                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        >  2:446046/1‑93 (MQ=255)

                                                   aGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTtattat                                      <  1:5149461/93‑1 (MQ=255)

                                                   aGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTtattat                                      >  2:1455803/1‑93 (MQ=255)

                                                   aGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTtattat                                      <  2:5271883/93‑1 (MQ=255)

                                                    gCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTattatt                                     <  2:5530515/93‑1 (MQ=255)

                                                    gCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTattatt                                     <  2:3244318/93‑1 (MQ=255)

                                                    gCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTattatt                                     >  2:563062/1‑93 (MQ=255)

                                                    gCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTattatt                                     <  2:2839930/93‑1 (MQ=255)

                                                     cGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTg                                    <  1:907698/93‑1 (MQ=255)

                                                     cGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTg                                    <  2:7803817/93‑1 (MQ=255)

                                                      gTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGc                                   <  1:5658558/93‑1 (MQ=255)

                                                      gTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGc                                   <  1:6031654/93‑1 (MQ=255)

                                                      gTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGc                                   <  1:6866458/93‑1 (MQ=255)

                                                       tATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCg                                  <  2:667014/93‑1 (MQ=255)

                                                       tATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCg                                  >  1:6565022/1‑93 (MQ=255)

                                                       tATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCg                                  <  1:195987/93‑1 (MQ=255)

                                                       tATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACACATTACGGTTATTATTGCg                                  >  2:3508709/1‑93 (MQ=255)

                                                        aTCGCCAAAGTCGGGAGTGTGATCCGCACCTCGGCCTCCCCATTTATGGAGTTCAGCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCgg                                 <  2:3814570/93‑1 (MQ=255)

                                                        aTCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCgg                                 <  1:1754766/93‑1 (MQ=255)

                                                         tCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCggg                                >  2:4685124/1‑93 (MQ=255)

                                                          cGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGa                               <  1:2988404/93‑1 (MQ=255)

                                                           gCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGaa                              <  1:2415639/93‑1 (MQ=255)

                                                           gCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGaa                              >  1:5899599/1‑93 (MQ=255)

                                                            ccAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAc                             <  1:4471030/93‑1 (MQ=255)

                                                            ccAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAc                             <  1:7008383/93‑1 (MQ=255)

                                                             cAAAGGCGGGAGGGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACg                            >  2:1150115/1‑93 (MQ=255)

                                                             cAAAGGCGCGAGTGTGATCCACACCTCGGCCTGTACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTGTTATTGCGGGAACg                            <  2:6927339/93‑1 (MQ=255)

                                                              aaaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGc                           <  2:5697156/93‑1 (MQ=255)

                                                              aaaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGc                           >  2:7276443/1‑93 (MQ=255)

                                                                aGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTc                         <  1:55883/93‑1 (MQ=255)

                                                                 ggCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTcc                        <  2:945296/93‑1 (MQ=255)

                                                                 ggCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTcc                        <  2:1768246/93‑1 (MQ=255)

                                                                  gCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCg                       <  1:471624/93‑1 (MQ=255)

                                                                    gggAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGc                     >  2:4332280/1‑93 (MQ=255)

                                                                      gAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCAc                   <  2:4013224/93‑1 (MQ=255)

                                                                        gtgtGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCt                 >  2:6137658/1‑93 (MQ=255)

                                                                         tgtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTc                >  1:3589270/1‑93 (MQ=255)

                                                                         tgtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTc                >  2:1217522/1‑93 (MQ=255)

                                                                         tgtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTc                <  1:5993043/93‑1 (MQ=255)

                                                                         tgtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTc                >  1:4808338/1‑93 (MQ=255)

                                                                         tgtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGAGGGAACGCTCCGGCACCTc                >  2:6321888/1‑93 (MQ=255)

                                                                         ggtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTc                <  1:4186153/92‑1 (MQ=255)

                                                                              tCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTg           >  2:6737797/1‑93 (MQ=255)

                                                                                cGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCg         <  1:829621/93‑1 (MQ=255)

                                                                                 gCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGt        <  1:1441207/93‑1 (MQ=255)

                                                                                 gCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGt        >  1:4171603/1‑93 (MQ=255)

                                                                                  cACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGtt       >  1:2328664/1‑93 (MQ=255)

                                                                                    ccTCGACCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTc     >  2:4867570/1‑93 (MQ=255)

                                                                                      tCGGCCTCCACATTTATGGAGTTCATCGGTAATAGTCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGt   >  2:4955029/1‑93 (MQ=255)

                                                                                      tCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGt   >  2:3172560/1‑93 (MQ=255)

                                                                                       cGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTg  >  1:2204619/1‑93 (MQ=255)

TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG  >  NC_000913/4158887‑4159066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  NC_000913/4158884‑4159070

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGC                                                                                               >  SRR4302543.287709/1‑94 (MQ=60)

 CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCC                                                                                              <  SRR4302543.3163997/94‑1 (MQ=60)

 CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCC                                                                                              >  SRR4302543.3286188/1‑94 (MQ=60)

  ATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCT                                                                                             >  SRR4302543.7347635/1‑94 (MQ=60)

     GTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCA                                                                                          >  SRR4302543.1434787/1‑94 (MQ=60)

       TGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACA                                                                                        >  SRR4302543.3422594/1‑94 (MQ=60)

       TGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACA                                                                                        <  SRR4302543.6763902/94‑1 (MQ=60)

       TGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACA                                                                                        >  SRR4302543.5249943/1‑94 (MQ=60)

        GATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAT                                                                                       <  SRR4302543.3493593/94‑1 (MQ=60)

        GATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAT                                                                                       >  SRR4302543.1166112/1‑94 (MQ=60)

        GATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACAT                                                                                       >  SRR4302543.3722635/1‑94 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                      >  SRR4302543.3853995/1‑94 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                      >  SRR4302543.2036501/1‑94 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                      >  SRR4302543.233974/1‑94 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                      >  SRR4302543.234184/1‑94 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                      <  SRR4302543.5146101/94‑1 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCCGCCTCCACATT                                                                                      >  SRR4302543.6200366/1‑94 (MQ=60)

          TGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTT                                                                                     <  SRR4302543.392401/94‑1 (MQ=60)

           GAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTA                                                                                    >  SRR4302543.6568575/1‑94 (MQ=60)

           GAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTA                                                                                    >  SRR4302543.98709/1‑94 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302543.3769601/94‑1 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302543.6970397/94‑1 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302543.3548512/94‑1 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302543.7689864/94‑1 (MQ=60)

             GAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATG                                                                                  <  SRR4302543.2755221/94‑1 (MQ=60)

             GAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATG                                                                                  <  SRR4302543.3324018/94‑1 (MQ=60)

              AGCGTTTTAATGCTACGCCACCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 <  SRR4302543.5400841/94‑1 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 <  SRR4302543.266379/94‑1 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 <  SRR4302543.7660997/94‑1 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 <  SRR4302543.3334422/94‑1 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 >  SRR4302543.3346184/1‑94 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 >  SRR4302543.1631402/1‑94 (MQ=60)

                CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                               <  SRR4302543.2092930/94‑1 (MQ=60)

                CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                               >  SRR4302543.6809060/1‑94 (MQ=60)

                CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                               >  SRR4302543.4705734/1‑94 (MQ=60)

                 cgtaTAATGCAACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                              <  SRR4302543.5024388/90‑1 (MQ=60)

                 GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTGTGGAGT                                                                              >  SRR4302543.5089799/1‑94 (MQ=60)

                 GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                              >  SRR4302543.5095791/1‑94 (MQ=60)

                  GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTT                                                                             <  SRR4302543.3498140/94‑1 (MQ=60)

                   TTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTC                                                                            >  SRR4302543.2134120/1‑94 (MQ=60)

                     TAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                          <  SRR4302543.2390070/94‑1 (MQ=60)

                     TAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                          >  SRR4302543.6295247/1‑94 (MQ=60)

                     TAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAT                                                                          <  SRR4302543.1265971/94‑1 (MQ=60)

                     TAATGCTACGCCAACTCATGCCCCAGGCGCGTCAGCTTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGACCTCCACATTTATGGAGTTCAT                                                                          <  SRR4302543.317578/94‑1 (MQ=60)

                      AATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATC                                                                         <  SRR4302543.6100348/94‑1 (MQ=60)

                      AATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATC                                                                         <  SRR4302543.7171171/94‑1 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTGCACATTTATGGAGGTCATCG                                                                        >  SRR4302543.252192/1‑94 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        <  SRR4302543.3740295/94‑1 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        <  SRR4302543.3444120/94‑1 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        >  SRR4302543.4216744/1‑94 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        >  SRR4302543.2023779/1‑94 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        <  SRR4302543.2969412/94‑1 (MQ=60)

                        TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       >  SRR4302543.5736384/1‑94 (MQ=60)

                        AGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       <  SRR4302543.6861009/94‑1 (MQ=60)

                          CTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTA                                                                     >  SRR4302543.1491133/1‑94 (MQ=60)

                            ACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAAT                                                                   <  SRR4302543.3172867/94‑1 (MQ=60)

                             CGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATA                                                                  >  SRR4302543.363983/1‑94 (MQ=60)

                             CGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATA                                                                  >  SRR4302543.7474948/1‑94 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                                 >  SRR4302543.5985056/1‑94 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                                 >  SRR4302543.1168529/1‑94 (MQ=60)

                               CCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAAT                                                                >  SRR4302543.3316188/1‑94 (MQ=60)

                               CCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAAT                                                                <  SRR4302543.6489187/94‑1 (MQ=60)

                               CCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAAT                                                                <  SRR4302543.7700408/94‑1 (MQ=60)

                                CAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATC                                                               >  SRR4302543.4423973/1‑94 (MQ=60)

                                CAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATC                                                               >  SRR4302543.3550872/1‑94 (MQ=60)

                                  ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             >  SRR4302543.5137582/1‑94 (MQ=60)

                                  ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             >  SRR4302543.3761906/1‑94 (MQ=60)

                                   CTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTA                                                            <  SRR4302543.5766576/94‑1 (MQ=60)

                                   CTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTA                                                            >  SRR4302543.2579878/1‑94 (MQ=60)

                                   CTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTA                                                            >  SRR4302543.6895266/1‑94 (MQ=60)

                                    TCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAA                                                           <  SRR4302543.5692712/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302543.3138744/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302543.6074450/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302543.1194208/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302543.759333/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302543.7438612/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302543.7477472/94‑1 (MQ=60)

                                      ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCCCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         <  SRR4302543.2144695/94‑1 (MQ=60)

                                      ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         <  SRR4302543.7433407/94‑1 (MQ=60)

                                      ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         <  SRR4302543.5420395/94‑1 (MQ=60)

                                      ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         <  SRR4302543.878780/94‑1 (MQ=60)

                                         CGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCT                                                      >  SRR4302543.1887765/1‑94 (MQ=60)

                                         CGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCT                                                      >  SRR4302543.5791277/1‑94 (MQ=60)

                                         CGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCT                                                      <  SRR4302543.3594969/94‑1 (MQ=60)

                                           CCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTC                                                    >  SRR4302543.4833250/1‑94 (MQ=60)

                                           CCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTC                                                    >  SRR4302543.5239162/1‑94 (MQ=60)

                                            CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   >  SRR4302543.6996535/1‑94 (MQ=60)

                                             cgggggGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  <  SRR4302543.2465794/88‑1 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  >  SRR4302543.7491153/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  >  SRR4302543.1899561/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  >  SRR4302543.7491152/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  >  SRR4302543.2000201/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  >  SRR4302543.5871361/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTACACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  <  SRR4302543.3490976/94‑1 (MQ=60)

                                              GGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGG                                                 <  SRR4302543.1998324/94‑1 (MQ=60)

                                              GGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGG                                                 <  SRR4302543.7077155/94‑1 (MQ=60)

                                              GGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGG                                                 <  SRR4302543.5597960/94‑1 (MQ=60)

                                              GGCACGTCAGCGTATCGCCAAAGGAGGGAGTGTGATCCGTCCCTCGACCTCCTCATTTCTGGGGTTCATCGGTAATAATCCTACCGCCTTCCGG                                                 <  SRR4302543.5597958/94‑1 (MQ=44)

                                                CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                               <  SRR4302543.2909123/94‑1 (MQ=60)

                                                 GCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTA                                              <  SRR4302543.6662228/94‑1 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             >  SRR4302543.653957/1‑94 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             <  SRR4302543.1733876/94‑1 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             <  SRR4302543.7776676/94‑1 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             <  SRR4302543.6522314/94‑1 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             >  SRR4302543.2894765/1‑94 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             >  SRR4302543.4121099/1‑94 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             <  SRR4302543.1502011/94‑1 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                            >  SRR4302543.2094598/1‑94 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                            >  SRR4302543.6679827/1‑94 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                            >  SRR4302543.4500295/1‑94 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                            <  SRR4302543.254447/94‑1 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                            >  SRR4302543.4210780/1‑94 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                            >  SRR4302543.2028495/1‑94 (MQ=60)

                                                    GCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTA                                           <  SRR4302543.417680/94‑1 (MQ=60)

                                                     CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302543.1827691/94‑1 (MQ=60)

                                                     CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302543.5798647/94‑1 (MQ=60)

                                                     CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          >  SRR4302543.5760701/1‑94 (MQ=60)

                                                     CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302543.4143402/94‑1 (MQ=60)

                                                      AGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATT                                         <  SRR4302543.5196005/94‑1 (MQ=60)

                                                        CGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGC                                       <  SRR4302543.915685/94‑1 (MQ=60)

                                                        CGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGC                                       >  SRR4302543.7603761/1‑94 (MQ=60)

                                                         GTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCG                                      <  SRR4302543.6931146/94‑1 (MQ=60)

                                                         GTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCG                                      <  SRR4302543.4450292/94‑1 (MQ=60)

                                                         GTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCG                                      <  SRR4302543.6088151/94‑1 (MQ=60)

                                                         GTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCG                                      <  SRR4302543.5710167/94‑1 (MQ=60)

                                                         GTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCG                                      >  SRR4302543.6626797/1‑94 (MQ=60)

                                                          TATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGG                                     <  SRR4302543.197644/94‑1 (MQ=60)

                                                           ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                    <  SRR4302543.1770439/94‑1 (MQ=60)

                                                           ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                    >  SRR4302543.6804332/1‑94 (MQ=60)

                                                           ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                    >  SRR4302543.1976146/1‑94 (MQ=60)

                                                             CGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAA                                  >  SRR4302543.5953412/1‑94 (MQ=60)

                                                             CGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAA                                  <  SRR4302543.3015538/94‑1 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                                 <  SRR4302543.2437464/94‑1 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                                 <  SRR4302543.2948891/94‑1 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                                 <  SRR4302543.2473375/94‑1 (MQ=60)

                                                              GCCAAAGGCGGGAGCGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                                 <  SRR4302543.916823/94‑1 (MQ=60)

                                                               CCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACG                                <  SRR4302543.4511580/94‑1 (MQ=60)

                                                               CCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACG                                <  SRR4302543.7075119/94‑1 (MQ=60)

                                                                CAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCGAACGCCTTCCAGTTATTATTGCGGGAACGC                               <  SRR4302543.6011528/94‑1 (MQ=60)

                                                                CAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGC                               >  SRR4302543.99669/1‑94 (MQ=60)

                                                                 AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCT                              <  SRR4302543.7893082/94‑1 (MQ=60)

                                                                 AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC‑CTC                             >  SRR4302543.2508900/1‑94 (MQ=60)

                                                                   AGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCC                            <  SRR4302543.56375/94‑1 (MQ=60)

                                                                    GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           >  SRR4302543.471008/1‑94 (MQ=60)

                                                                    GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           <  SRR4302543.1670648/94‑1 (MQ=60)

                                                                    GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           <  SRR4302543.6309363/94‑1 (MQ=60)

                                                                    GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           <  SRR4302543.1884294/94‑1 (MQ=60)

                                                                    GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           <  SRR4302543.671133/94‑1 (MQ=60)

                                                                     GCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGG                          <  SRR4302543.475994/94‑1 (MQ=60)

                                                                       GGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                        <  SRR4302543.4340102/94‑1 (MQ=60)

                                                                        GGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCAC                       <  SRR4302543.2538583/94‑1 (MQ=60)

                                                                          AGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGcacccc                     >  SRR4302543.3157941/1‑88 (MQ=60)

                                                                          AGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCT                     >  SRR4302543.4334932/1‑94 (MQ=60)

                                                                           GTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTC                    >  SRR4302543.4852252/1‑94 (MQ=60)

                                                                           GTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTC                    >  SRR4302543.3620965/1‑94 (MQ=60)

                                                                           GTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTC                    >  SRR4302543.3620964/1‑94 (MQ=60)

                                                                            gtTGATCCGCACCTCGGCCGCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   <  SRR4302543.6047977/92‑1 (MQ=60)

                                                                            TGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   <  SRR4302543.6047976/94‑1 (MQ=60)

                                                                            GGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   <  SRR4302543.4224106/94‑1 (MQ=60)

                                                                             GTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCG                  >  SRR4302543.3385948/1‑94 (MQ=60)

                                                                               GATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCT                <  SRR4302543.87639/94‑1 (MQ=60)

                                                                               GATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCT                <  SRR4302543.1266022/94‑1 (MQ=60)

                                                                                ATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTG               >  SRR4302543.5656375/1‑94 (MQ=60)

                                                                                 TCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGC              <  SRR4302543.2434955/94‑1 (MQ=60)

                                                                                  CCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCG             <  SRR4302543.4774000/94‑1 (MQ=60)

                                                                                   CGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGT            >  SRR4302543.4209381/1‑94 (MQ=60)

                                                                                   CGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGT            <  SRR4302543.836934/94‑1 (MQ=60)

                                                                                    GCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTT           <  SRR4302543.1454226/94‑1 (MQ=60)

                                                                                    GCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTT           >  SRR4302543.4362188/1‑94 (MQ=60)

                                                                                    GCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTT           >  SRR4302543.2349810/1‑94 (MQ=60)

                                                                                     CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          >  SRR4302543.6109287/1‑94 (MQ=60)

                                                                                     CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          >  SRR4302543.1470121/1‑94 (MQ=60)

                                                                                     CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          >  SRR4302543.6868971/1‑94 (MQ=60)

                                                                                      CCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTC         <  SRR4302543.2234857/94‑1 (MQ=60)

                                                                                      ACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTC         >  SRR4302543.5501062/1‑94 (MQ=60)

                                                                                       CCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCG        >  SRR4302543.3811587/1‑94 (MQ=60)

                                                                                        CTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGT       >  SRR4302543.5049951/1‑94 (MQ=60)

                                                                                         TCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG      >  SRR4302543.2224465/1‑94 (MQ=60)

                                                                                          CGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGC     >  SRR4302543.5859679/1‑94 (MQ=60)

                                                                                          CGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGC     >  SRR4302543.3929558/1‑94 (MQ=60)

                                                                                           GGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC    <  SRR4302543.5092352/94‑1 (MQ=60)

                                                                                           GGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC    >  SRR4302543.2936246/1‑94 (MQ=60)

                                                                                           GGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC    <  SRR4302543.310328/94‑1 (MQ=60)

                                                                                            GCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCG   >  SRR4302543.5189870/1‑94 (MQ=60)

                                                                                             CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302543.1700474/1‑94 (MQ=60)

                                                                                             CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302543.4595278/1‑94 (MQ=60)

                                                                                             CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302543.1468270/1‑94 (MQ=60)

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  NC_000913/4158884‑4159070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`