Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,178,668	A→G	intergenic (+165/‑155)	rplL → / → rpoB	50S ribosomal subunit protein L7/L12/RNA polymerase beta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,178,668	0	A	G	99.6%	819.6 / ‑4.6	260	intergenic (+165/‑155)	rplL/rpoB	50S ribosomal subunit protein L7/L12/RNA polymerase beta subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (137/122); minor base C (1/0); total (138/122)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01

Only 100 of 263 total aligned reads displayed.

TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAA  >  NC_000913/4178578‑4178756

tGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCg                                                                                        >  1:1122991/1‑93 (MQ=255)

tGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCg                                                                                        <  1:1347917/93‑1 (MQ=255)

 gTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGt                                                                                       <  1:2620343/93‑1 (MQ=255)

 gTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGt                                                                                       >  1:1539684/1‑93 (MQ=255)

  tAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTc                                                                                      <  1:2973817/93‑1 (MQ=255)

      gcgcCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGtt                                                                                  >  2:3937253/1‑93 (MQ=255)

       cgcCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTc                                                                                 <  1:948356/93‑1 (MQ=255)

       cgcCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTc                                                                                 <  1:3874703/93‑1 (MQ=255)

         ccAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCtg                                                                               >  2:2542611/1‑93 (MQ=255)

          cAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCtgt                                                                              <  2:2871524/93‑1 (MQ=255)

          cAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCtgt                                                                              >  2:643191/1‑93 (MQ=255)

           aGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCtgtg                                                                             <  1:4278313/93‑1 (MQ=255)

            gTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTgtgt                                                                            >  1:1928437/1‑93 (MQ=255)

            gTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTgtgt                                                                            >  1:1270402/1‑93 (MQ=255)

             tAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTa                                                                           >  2:2063524/1‑93 (MQ=255)

             tAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTa                                                                           >  1:3076421/1‑93 (MQ=255)

              aGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTaa                                                                          <  1:1145027/93‑1 (MQ=255)

               gCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTaaa                                                                         >  1:4550647/1‑93 (MQ=255)

                cGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAAt                                                                        <  1:1584906/93‑1 (MQ=255)

                cGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAAt                                                                        <  2:2242480/93‑1 (MQ=255)

                 gTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATc                                                                       >  1:200197/1‑93 (MQ=255)

                 gTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATc                                                                       >  2:4279143/1‑93 (MQ=255)

                 gTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATc                                                                       <  1:3748007/93‑1 (MQ=255)

                  tttCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCg                                                                      >  1:4429947/1‑93 (MQ=255)

                    tCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCa                                                                    <  1:1716272/93‑1 (MQ=255)

                     cacaCTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCaa                                                                   >  2:583041/1‑93 (MQ=255)

                        acTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGa                                                                <  2:111533/93‑1 (MQ=255)

                           gTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAt                                                             >  2:1089904/1‑93 (MQ=255)

                           gTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAt                                                             >  1:1440833/1‑93 (MQ=255)

                           gTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAt                                                             >  2:1308553/1‑93 (MQ=255)

                            tttGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATg                                                            >  1:3272684/1‑93 (MQ=255)

                            tttGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATg                                                            >  1:3349235/1‑93 (MQ=255)

                            tttGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATg                                                            >  1:352076/1‑93 (MQ=255)

                              tGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGt                                                          <  1:4075153/93‑1 (MQ=255)

                                actactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGttt                                                        <  2:3715600/93‑1 (MQ=255)

                                 ctactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCTGTTCTGTGTAAATCGCAATGAAATGGTTTa                                                       >  2:4459562/1‑93 (MQ=255)

                                 ctactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTa                                                       >  1:2027347/1‑93 (MQ=255)

                                  tactGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTaa                                                      <  2:4072504/93‑1 (MQ=255)

                                   actGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAg                                                     >  2:3645303/1‑93 (MQ=255)

                                    ctgctgTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGc                                                    <  2:3597267/93‑1 (MQ=255)

                                    ctgctgTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGc                                                    >  2:4025516/1‑93 (MQ=255)

                                      gctgTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGt                                                  <  2:1613014/93‑1 (MQ=255)

                                        tgtgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGa                                                >  1:3370861/1‑93 (MQ=255)

                                        tgtgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGa                                                >  2:2002558/1‑93 (MQ=255)

                                        tgtgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGa                                                >  2:1204762/1‑93 (MQ=255)

                                        tgtgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGa                                                >  1:3557220/1‑93 (MQ=255)

                                         gtgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGAt                                               <  2:3451702/93‑1 (MQ=255)

                                          tgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATa                                              <  2:4365711/93‑1 (MQ=255)

                                          tgCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATa                                              <  1:2566364/93‑1 (MQ=255)

                                            ccTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGc                                            >  2:4167846/1‑93 (MQ=255)

                                            ccTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGc                                            <  1:684364/93‑1 (MQ=255)

                                            ccTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGc                                            <  2:1783522/93‑1 (MQ=255)

                                             cTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCa                                           <  1:207681/93‑1 (MQ=255)

                                              tttCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCaa                                          >  1:4474409/1‑93 (MQ=255)

                                               ttCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAAc                                         >  2:790540/1‑93 (MQ=255)

                                               ttCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAAc                                         <  2:341053/93‑1 (MQ=255)

                                               ttCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAAc                                         >  2:4556293/1‑93 (MQ=255)

                                                tCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACa                                        <  1:378147/93‑1 (MQ=255)

                                                tCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACa                                        <  2:3760521/93‑1 (MQ=255)

                                                tCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACa                                        <  2:2628155/93‑1 (MQ=255)

                                                tCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACa                                        >  2:3018141/1‑93 (MQ=255)

                                                 cAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAg                                       <  2:4524155/93‑1 (MQ=255)

                                                   aTGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGc                                     <  1:4466968/93‑1 (MQ=255)

                                                    tGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCa                                    >  1:1476614/1‑93 (MQ=255)

                                                     gCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCAt                                   <  1:559008/93‑1 (MQ=255)

                                                       ttGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTg                                 <  2:3129028/93‑1 (MQ=255)

                                                           ttCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGa                             >  1:1037053/1‑93 (MQ=255)

                                                           ttCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGa                             >  1:1963666/1‑93 (MQ=255)

                                                            tCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGaa                            <  2:3780104/93‑1 (MQ=255)

                                                             cTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGaaa                           <  1:1203457/93‑1 (MQ=255)

                                                             cTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGaaa                           >  1:2667075/1‑93 (MQ=255)

                                                              tATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAg                          <  2:273371/93‑1 (MQ=255)

                                                              tATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAg                          >  1:1808781/1‑93 (MQ=255)

                                                              tATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAg                          >  1:1172898/1‑93 (MQ=255)

                                                               aTCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAgt                         <  2:1700953/93‑1 (MQ=255)

                                                                tCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAgtg                        >  1:4365733/1‑93 (MQ=255)

                                                                tCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAgtg                        <  2:3488820/93‑1 (MQ=255)

                                                                  gacgacTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATGGCGGAAAGTGtt                      <  2:2914114/93‑1 (MQ=255)

                                                                   acgacTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTc                     >  1:855800/1‑93 (MQ=255)

                                                                   acgacTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTc                     <  2:3476842/93‑1 (MQ=255)

                                                                   acgacTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTc                     >  2:4242939/1‑93 (MQ=255)

                                                                   acgacTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTc                     >  1:2843578/1‑93 (MQ=255)

                                                                    cgacTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTcc                    <  2:2560837/93‑1 (MQ=255)

                                                                      acTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAt                  <  1:616365/93‑1 (MQ=255)

                                                                      acTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAt                  <  2:1458623/93‑1 (MQ=255)

                                                                      acTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAt                  >  1:3970727/1‑93 (MQ=255)

                                                                      acTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAt                  <  1:2478153/93‑1 (MQ=255)

                                                                        ttAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAttt                >  1:3619347/1‑93 (MQ=255)

                                                                         tAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAtttt               >  1:1319444/1‑93 (MQ=255)

                                                                          aaTATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTc              >  2:138859/1‑93 (MQ=255)

                                                                          aaTATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTc              >  1:2354779/1‑93 (MQ=255)

                                                                           atatACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTcc             <  1:4644694/93‑1 (MQ=255)

                                                                           atatACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTcc             >  2:95953/1‑93 (MQ=255)

                                                                           atatACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGGTCCATTTTcc             >  2:1478438/1‑93 (MQ=255)

                                                                            tataCTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCg            >  1:1700424/1‑93 (MQ=255)

                                                                              taCTGCGACAGGCCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGt          >  1:2416764/1‑93 (MQ=255)

                                                                                   cGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTcaaca     <  2:2783031/93‑1 (MQ=255)

                                                                                    gACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTcaacaa    >  1:2179203/1‑93 (MQ=255)

                                                                                     aCAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACaaa   >  1:303394/1‑93 (MQ=255)

                                                                                      cAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACaaaa  >  2:3279937/1‑93 (MQ=255)

TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAA  >  NC_000913/4178578‑4178756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGTG  >  NC_000913/4178575‑4178761

CGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGG                                                                                               >  SRR4302535.2000781/1‑94 (MQ=60)

CGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGG                                                                                               >  SRR4302535.2337881/1‑94 (MQ=60)

CGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGG                                                                                               <  SRR4302535.3993601/94‑1 (MQ=60)

 GCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGC                                                                                              >  SRR4302535.3209993/1‑94 (MQ=60)

 GCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGC                                                                                              >  SRR4302535.679491/1‑94 (MQ=60)

  CTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCG                                                                                             >  SRR4302535.1131004/1‑94 (MQ=60)

   TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGT                                                                                            <  SRR4302535.1357538/94‑1 (MQ=60)

   TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGT                                                                                            >  SRR4302535.4503738/1‑94 (MQ=60)

   TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGT                                                                                            >  SRR4302535.1550784/1‑94 (MQ=60)

   TGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGT                                                                                            >  SRR4302535.276745/1‑94 (MQ=60)

    GTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTC                                                                                           <  SRR4302535.2639127/94‑1 (MQ=60)

     TAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCGTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCC                                                                                          <  SRR4302535.358052/94‑1 (MQ=60)

     TAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCC                                                                                          <  SRR4302535.2994691/94‑1 (MQ=60)

     TAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCC                                                                                          <  SRR4302535.668032/94‑1 (MQ=60)

        GGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTT                                                                                       <  SRR4302535.334758/94‑1 (MQ=60)

         GCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTC                                                                                      >  SRR4302535.16332/1‑94 (MQ=60)

          CGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCT                                                                                     <  SRR4302535.955076/94‑1 (MQ=60)

          CGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCT                                                                                     >  SRR4302535.2374157/1‑94 (MQ=60)

          CGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCT                                                                                     <  SRR4302535.3901326/94‑1 (MQ=60)

          CGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCT                                                                                     <  SRR4302535.2953470/94‑1 (MQ=60)

            CCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGT                                                                                   >  SRR4302535.2032307/1‑94 (MQ=60)

             CAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTG                                                                                  >  SRR4302535.1833606/1‑94 (MQ=60)

              AGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGT                                                                                 >  SRR4302535.1279479/1‑94 (MQ=60)

              AGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGT                                                                                 <  SRR4302535.4307591/94‑1 (MQ=60)

              AGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGT                                                                                 >  SRR4302535.1942335/1‑94 (MQ=60)

               GTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTA                                                                                >  SRR4302535.3097883/1‑94 (MQ=60)

                 AGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAA                                                                              <  SRR4302535.4620323/94‑1 (MQ=60)

                 AGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAA                                                                              <  SRR4302535.1153188/94‑1 (MQ=60)

                 AGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAA                                                                              >  SRR4302535.4581752/1‑94 (MQ=60)

                  GCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAAT                                                                             <  SRR4302535.70742/94‑1 (MQ=60)

                   CGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATC                                                                            >  SRR4302535.201567/1‑94 (MQ=60)

                   CGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATC                                                                            <  SRR4302535.1596342/94‑1 (MQ=60)

                    GTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCG                                                                           <  SRR4302535.3389731/94‑1 (MQ=60)

                    GTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCG                                                                           <  SRR4302535.3773935/94‑1 (MQ=60)

                    GTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCG                                                                           >  SRR4302535.4460301/1‑94 (MQ=60)

                      TTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCA                                                                         >  SRR4302535.4551826/1‑94 (MQ=60)

                      TTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCA                                                                         <  SRR4302535.1330897/94‑1 (MQ=60)

                       TCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAA                                                                        <  SRR4302535.1728689/94‑1 (MQ=60)

                        CACACTGTTTGACTTCTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAAT                                                                       <  SRR4302535.4483536/94‑1 (MQ=60)

                        CACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAAT                                                                       >  SRR4302535.1396199/1‑94 (MQ=60)

                         ACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATG                                                                      >  SRR4302535.434078/1‑94 (MQ=60)

                          CACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGA                                                                     >  SRR4302535.2627903/1‑94 (MQ=60)

                          CACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGA                                                                     >  SRR4302535.3061079/1‑94 (MQ=60)

                          CACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGA                                                                     >  SRR4302535.1955978/1‑94 (MQ=60)

                          CACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGA                                                                     >  SRR4302535.3758600/1‑94 (MQ=60)

                             TGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAT                                                                  >  SRR4302535.1451140/1‑94 (MQ=60)

                             TGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAT                                                                  <  SRR4302535.900722/94‑1 (MQ=60)

                             TGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAAT                                                                  >  SRR4302535.2156298/1‑94 (MQ=60)

                              GTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATG                                                                 >  SRR4302535.354505/1‑94 (MQ=60)

                              GTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATG                                                                 >  SRR4302535.3372567/1‑94 (MQ=60)

                              GTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATG                                                                 >  SRR4302535.3295418/1‑94 (MQ=60)

                               TTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGG                                                                <  SRR4302535.4329436/94‑1 (MQ=60)

                                TTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGT                                                               <  SRR4302535.254717/94‑1 (MQ=60)

                                 TGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTT                                                              <  SRR4302535.4103036/94‑1 (MQ=60)

                                  GACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTT                                                             <  SRR4302535.1164873/94‑1 (MQ=60)

                                   ACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTA                                                            >  SRR4302535.2041960/1‑94 (MQ=60)

                                   ACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTA                                                            <  SRR4302535.2012728/94‑1 (MQ=60)

                                      ACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGC                                                         >  SRR4302535.4461878/1‑94 (MQ=60)

                                      ACTGCTATGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGC                                                         <  SRR4302535.3947828/94‑1 (MQ=60)

                                         GCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTG                                                      <  SRR4302535.3636608/94‑1 (MQ=60)

                                         GCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTG                                                      <  SRR4302535.140242/94‑1 (MQ=60)

                                          CTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGA                                                     >  SRR4302535.3581893/1‑94 (MQ=60)

                                          CTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGA                                                     >  SRR4302535.3394312/1‑94 (MQ=60)

                                           TGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGAT                                                    <  SRR4302535.1141869/94‑1 (MQ=60)

                                             TGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAG                                                  >  SRR4302535.1616245/1‑94 (MQ=60)

                                             TGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAG                                                  <  SRR4302535.3279263/94‑1 (MQ=60)

                                             TGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAG                                                  <  SRR4302535.2584826/94‑1 (MQ=60)

                                             TGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAG                                                  >  SRR4302535.23041/1‑94 (MQ=60)

                                             TGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAG                                                  <  SRR4302535.1312746/94‑1 (MQ=60)

                                              GCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGC                                                 >  SRR4302535.2468073/1‑94 (MQ=60)

                                               CCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCA                                                <  SRR4302535.689155/94‑1 (MQ=60)

                                                CTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAA                                               <  SRR4302535.209106/94‑1 (MQ=60)

                                                CTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAA                                               >  SRR4302535.1137960/1‑94 (MQ=60)

                                                CTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAA                                               >  SRR4302535.4505110/1‑94 (MQ=60)

                                                 TTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAAC                                              >  SRR4302535.1726828/1‑94 (MQ=60)

                                                  TTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACA                                             <  SRR4302535.634258/94‑1 (MQ=60)

                                                  TTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACA                                             >  SRR4302535.3494607/1‑94 (MQ=60)

                                                  TTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACA                                             >  SRR4302535.583256/1‑94 (MQ=60)

                                                   TCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAG                                            <  SRR4302535.2488825/94‑1 (MQ=60)

                                                   TCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAG                                            <  SRR4302535.299715/94‑1 (MQ=60)

                                                   TCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAG                                            <  SRR4302535.380767/94‑1 (MQ=60)

                                                    CAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGG                                           >  SRR4302535.1949076/1‑94 (MQ=60)

                                                    CAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGC                                           >  SRR4302535.1521812/1‑94 (MQ=60)

                                                      ATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCA                                         <  SRR4302535.4497615/94‑1 (MQ=60)

                                                      ATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCA                                         >  SRR4302535.1487184/1‑94 (MQ=60)

                                                      ATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCA                                         <  SRR4302535.3340952/94‑1 (MQ=60)

                                                      ATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCA                                         >  SRR4302535.1487181/1‑94 (MQ=60)

                                                      ATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCA                                         >  SRR4302535.1723428/1‑94 (MQ=60)

                                                      ATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCA                                         >  SRR4302535.268411/1‑94 (MQ=60)

                                                       TGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCAT                                        <  SRR4302535.2656714/94‑1 (MQ=60)

                                                       TGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCAT                                        >  SRR4302535.907067/1‑94 (MQ=60)

                                                        GCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATT                                       <  SRR4302535.562915/94‑1 (MQ=60)

                                                        GCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATT                                       <  SRR4302535.967357/94‑1 (MQ=60)

                                                        GCTTGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATT                                       <  SRR4302535.2153453/94‑1 (MQ=60)

                                                           TGTTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCG                                    <  SRR4302535.464830/94‑1 (MQ=60)

                                                             TTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGA                                  >  SRR4302535.1044419/1‑94 (MQ=60)

                                                             TTTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGA                                  >  SRR4302535.1977824/1‑94 (MQ=60)

                                                              TTCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAA                                 <  SRR4302535.3834026/94‑1 (MQ=60)

                                                               TCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAA                                >  SRR4302535.1188218/1‑94 (MQ=60)

                                                               TCTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAA                                >  SRR4302535.2686167/1‑94 (MQ=60)

                                                                CTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAG                               >  SRR4302535.1181272/1‑94 (MQ=60)

                                                                CTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAG                               <  SRR4302535.3031844/94‑1 (MQ=60)

                                                                CTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAG                               >  SRR4302535.1821871/1‑94 (MQ=60)

                                                                CTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAG                               <  SRR4302535.1212095/94‑1 (MQ=60)

                                                                CTATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAG                               <  SRR4302535.3897816/94‑1 (MQ=60)

                                                                 TATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGT                              <  SRR4302535.3806891/94‑1 (MQ=60)

                                                                 TATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGT                              <  SRR4302535.4282063/94‑1 (MQ=60)

                                                                  ATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTG                             >  SRR4302535.1263654/1‑94 (MQ=60)

                                                                  ATCGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTG                             >  SRR4302535.4395606/1‑94 (MQ=60)

                                                                    CGACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTT                           >  SRR4302535.1532219/1‑94 (MQ=60)

                                                                     GACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTC                          <  SRR4302535.4507619/94‑1 (MQ=60)

                                                                     GACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTC                          >  SRR4302535.861834/1‑94 (MQ=60)

                                                                     GACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTC                          >  SRR4302535.2863743/1‑94 (MQ=60)

                                                                      ACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCC                         <  SRR4302535.4245501/94‑1 (MQ=60)

                                                                      ACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCC                         >  SRR4302535.118703/1‑94 (MQ=60)

                                                                      ACGACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCC                         >  SRR4302535.1094698/1‑94 (MQ=60)

                                                                        GACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAT                       >  SRR4302535.603302/1‑94 (MQ=60)

                                                                        GACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAT                       >  SRR4302535.3997849/1‑94 (MQ=60)

                                                                        GACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAT                       >  SRR4302535.4705119/1‑94 (MQ=60)

                                                                        GACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAT                       >  SRR4302535.2519452/1‑94 (MQ=60)

                                                                        GACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCAT                       <  SRR4302535.2026173/94‑1 (MQ=60)

                                                                         ACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATT                      <  SRR4302535.620650/94‑1 (MQ=60)

                                                                         ACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATT                      <  SRR4302535.3267392/94‑1 (MQ=60)

                                                                         ACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATT                      <  SRR4302535.2496026/94‑1 (MQ=60)

                                                                         ACTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATT                      <  SRR4302535.402003/94‑1 (MQ=60)

                                                                          CTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTT                     <  SRR4302535.2072160/94‑1 (MQ=60)

                                                                          CTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTT                     >  SRR4302535.3644438/1‑94 (MQ=60)

                                                                          CTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTT                     >  SRR4302535.1332019/1‑94 (MQ=60)

                                                                          CTTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTT                     >  SRR4302535.2323280/1‑94 (MQ=60)

                                                                           TTAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTT                    >  SRR4302535.1328873/1‑94 (MQ=60)

                                                                            TAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTC                   >  SRR4302535.3565066/1‑94 (MQ=60)

                                                                            TAATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTC                   >  SRR4302535.2371664/1‑94 (MQ=60)

                                                                             AATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCC                  >  SRR4302535.4459591/1‑94 (MQ=60)

                                                                             AATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCC                  <  SRR4302535.3743271/94‑1 (MQ=60)

                                                                              ATATACTGCGACAGGGCGTCCGTTCTGTTTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCG                 <  SRR4302535.1562147/94‑1 (MQ=60)

                                                                              ATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCG                 <  SRR4302535.4676172/94‑1 (MQ=60)

                                                                              ATATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCG                 >  SRR4302535.1712709/1‑94 (MQ=60)

                                                                                ATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGT               <  SRR4302535.3903363/94‑1 (MQ=60)

                                                                                ATACTGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGT               >  SRR4302535.1764777/1‑94 (MQ=60)

                                                                                ATACTGCGACAGGCCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGT               >  SRR4302535.2434160/1‑94 (MQ=60)

                                                                                    TGCGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAAC           <  SRR4302535.1921882/94‑1 (MQ=60)

                                                                                      CGACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAA         >  SRR4302535.2194761/1‑94 (MQ=60)

                                                                                       GACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAA        >  SRR4302535.305502/1‑94 (MQ=60)

                                                                                       GACAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAA        >  SRR4302535.3402181/1‑94 (MQ=60)

                                                                                         CAGGGCGTCCTTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAAT      <  SRR4302535.2758941/94‑1 (MQ=60)

                                                                                         CAGGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAAT      <  SRR4302535.1266335/94‑1 (MQ=60)

                                                                                           GGGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAG    >  SRR4302535.3218378/1‑94 (MQ=60)

                                                                                            GGCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGT   <  SRR4302535.2203425/94‑1 (MQ=60)

                                                                                             GCGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGTG  <  SRR4302535.1622001/94‑1 (MQ=60)

CGCTGTAAGGCGCCAGTAGCGTTTCACACTGTTTGACTACTGCTGTGCCTTTCAATGCTTGTTTCTATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGTG  >  NC_000913/4178575‑4178761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`