Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,265,202	A→G	L170L (TTA→TTG)	tyrB →	tyrosine aminotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,265,202	0	A	G	100.0%	670.1 / NA	210	L170L (TTA→TTG)	tyrB	tyrosine aminotransferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (108/102); total (108/102)

Only 100 of 228 total aligned reads displayed.

GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA  >  NC_000913/4265112‑4265291

ggCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGcc                                                                                         <  2:3330822/93‑1 (MQ=255)

 gCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCt                                                                                        <  2:4490749/93‑1 (MQ=255)

    ggATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATtgcctgcc                                                                                     >  2:1157805/1‑93 (MQ=255)

     gATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGccc                                                                                    <  2:2307391/93‑1 (MQ=255)

     gATTCGAAATGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGccc                                                                                    >  2:4611414/1‑93 (MQ=255)

      aTTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCg                                                                                   >  2:3898103/1‑93 (MQ=255)

       ttCGAAGTGAGTACTTACCCCTGGTATGGCGAAGCGACTAACGGCGTGTGCTTTAATGACCTGCTGGTGACGCTGAACACATTGCCTGACCGc                                                                                  >  2:1855819/1‑93 (MQ=255)

        tCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCa                                                                                 >  2:4148309/1‑93 (MQ=255)

         cGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAg                                                                                >  1:4213213/1‑93 (MQ=255)

         cGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAg                                                                                <  1:4517913/93‑1 (MQ=255)

          gAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGt                                                                               <  1:4028696/93‑1 (MQ=255)

          gAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGt                                                                               <  2:1705830/93‑1 (MQ=255)

           aaGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTa                                                                              >  1:2793157/1‑93 (MQ=255)

             gTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAtt                                                                            <  1:2615715/93‑1 (MQ=255)

             gTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTAtt                                                                            >  2:789953/1‑93 (MQ=255)

             gTGAGTACTTACCCCTGGGATGACGAAGCGACTAACGGCGTGTGCTTTAATGACCTGTTGGCGACGGTGAAAACAATGCCTGCCTGCAGTAtt                                                                            >  2:4048669/1‑93 (MQ=255)

              tGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtg                                                                           >  2:4405848/1‑93 (MQ=255)

              agAGTACTTACCCCTGGTATGACGAAGCGGCTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCATGCCCGCAGTATtg                                                                           >  2:3170630/2‑93 (MQ=255)

               gAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtgt                                                                          <  1:1998306/93‑1 (MQ=255)

               gAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtgt                                                                          >  1:1193669/1‑93 (MQ=255)

               gAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtgt                                                                          >  1:2900854/1‑93 (MQ=255)

                aGTACTTCCCCCTGGTATGACGAAGCGACTAACGGCGTGCTCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATtgtg                                                                         <  2:540368/93‑1 (MQ=255)

                 gTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTgtgt                                                                        >  1:3370543/1‑93 (MQ=255)

                   aCTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtg                                                                      >  2:1459093/1‑93 (MQ=255)

                    cTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgc                                                                     <  1:794722/93‑1 (MQ=255)

                    cTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgc                                                                     >  1:1679113/1‑93 (MQ=255)

                    cTTACCCCTGGTATGACGAAGCGACTAACGGCGCGCGCGTTAATGACCTGTTGGCGACGCTGAAAACATCGCCTGCCCGCAGTATTGTGTtgc                                                                     >  2:1350801/1‑93 (MQ=255)

                     ttACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgct                                                                    >  2:3868483/1‑93 (MQ=255)

                      tACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgctg                                                                   >  1:304873/1‑93 (MQ=255)

                       aCCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTtgctgc                                                                  >  2:59959/1‑93 (MQ=255)

                        ccccTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCa                                                                 <  1:673063/93‑1 (MQ=255)

                          ccTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATc                                                               >  1:1626474/1‑93 (MQ=255)

                            tGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCa                                                             <  2:4326938/93‑1 (MQ=255)

                            tGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCa                                                             >  1:622042/1‑93 (MQ=255)

                             ggTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAt                                                            >  2:484954/1‑93 (MQ=255)

                              gTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATg                                                           >  1:3902469/1‑93 (MQ=255)

                                 tGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTg                                                        >  2:1589682/1‑93 (MQ=255)

                                 tGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTg                                                        >  1:1927433/1‑93 (MQ=255)

                                  gACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGc                                                       <  2:912181/93‑1 (MQ=255)

                                   aCGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGcc                                                      <  2:1026912/93‑1 (MQ=255)

                                    cGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCca                                                     >  2:1429386/1‑93 (MQ=255)

                                     gAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCcac                                                    <  1:1452631/93‑1 (MQ=255)

                                      aaGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCcaca                                                   >  1:377080/1‑93 (MQ=255)

                                      aaGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCcaca                                                   >  2:2064502/1‑93 (MQ=255)

                                          gACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAAccc                                               >  2:254028/1‑93 (MQ=255)

                                           aCTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCa                                              >  2:3407517/1‑93 (MQ=255)

                                            cTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCaa                                             >  2:4419882/1‑93 (MQ=255)

                                            cTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCaa                                             >  1:3418305/1‑93 (MQ=255)

                                              aaCGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACg                                           <  1:3623970/93‑1 (MQ=255)

                                              aaCGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACg                                           <  1:3787942/93‑1 (MQ=255)

                                              aaCGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACg                                           <  1:3708689/93‑1 (MQ=255)

                                               aCGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACgg                                          >  1:2227621/1‑93 (MQ=255)

                                                cGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACggg                                         <  2:740090/93‑1 (MQ=255)

                                                cGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACggg                                         >  1:1159602/1‑93 (MQ=255)

                                                 ggCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACgggc                                        >  2:156277/1‑92 (MQ=255)

                                                 ggCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGt                                        <  2:2052324/93‑1 (MQ=255)

                                                  gCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTg                                       >  1:1546216/1‑93 (MQ=255)

                                                    gTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGcc                                     >  1:2664322/1‑93 (MQ=255)

                                                    gTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGcc                                     <  1:101641/93‑1 (MQ=255)

                                                     tGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCg                                    >  1:574978/1‑93 (MQ=255)

                                                     tGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCg                                    >  1:710129/1‑93 (MQ=255)

                                                     tGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTCGCCACAACCCAACGGGTGCCg                                    <  2:2984944/93‑1 (MQ=255)

                                                       cgcTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGAt                                  >  2:3093497/1‑93 (MQ=255)

                                                         cTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGAtct                                <  1:1867188/93‑1 (MQ=255)

                                                          tttAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGAtctc                               >  1:215198/1‑93 (MQ=255)

                                                            tAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCAc                             >  1:2434338/1‑93 (MQ=255)

                                                            tAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCAc                             >  1:3693299/1‑93 (MQ=255)

                                                            tAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCAc                             <  1:1386167/93‑1 (MQ=255)

                                                              aTGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTa                           >  1:2821827/1‑93 (MQ=255)

                                                                gACCTGTTGGCGACGCTGATAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAt                         >  2:4582342/1‑93 (MQ=255)

                                                                gACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAt                         >  2:2408589/1‑93 (MQ=255)

                                                                 aCCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATg                        >  2:3953156/1‑93 (MQ=255)

                                                                  ccTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGa                       >  2:3429420/1‑93 (MQ=255)

                                                                  ccTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGa                       <  1:2757352/93‑1 (MQ=255)

                                                                    tGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATc                     <  1:1663927/93‑1 (MQ=255)

                                                                      ttGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAg                   <  1:3500914/93‑1 (MQ=255)

                                                                      ttGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAg                   <  1:2043229/93‑1 (MQ=255)

                                                                         gCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTgg                <  2:3607410/93‑1 (MQ=255)

                                                                         gCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTgg                <  2:3690928/93‑1 (MQ=255)

                                                                           gACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGa              >  1:800973/1‑93 (MQ=255)

                                                                           gACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGa              <  1:2252232/93‑1 (MQ=255)

                                                                            aCGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAt             >  1:489211/1‑93 (MQ=255)

                                                                            aCGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAt             <  1:4411535/93‑1 (MQ=255)

                                                                            aCGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACACAACGGGTTCCGATCTCACTAATGATCAGTGGGAt             >  2:690038/1‑93 (MQ=255)

                                                                              gCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATTATCAGTGGGATGc           >  2:1105821/1‑93 (MQ=255)

                                                                                tGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg         >  2:771887/1‑93 (MQ=255)

                                                                                tGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg         >  1:1241471/1‑93 (MQ=255)

                                                                                cgAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCgg         <  1:3250333/92‑1 (MQ=255)

                                                                                  aaaaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTg       >  1:2553163/1‑93 (MQ=255)

                                                                                   aaaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGa      <  2:1113477/93‑1 (MQ=255)

                                                                                   aaaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTAGCCAGAACCCAACGGGTGCCGATCTCACTAATGGTCAGTGGGATGGGGTGa      >  1:3615079/1‑93 (MQ=255)

                                                                                    aaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAt     <  2:3376086/93‑1 (MQ=255)

                                                                                    aaCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAt     >  1:4041468/1‑93 (MQ=255)

                                                                                     aCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAtt    >  1:3145720/1‑93 (MQ=255)

                                                                                     aCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAtt    <  1:4297742/93‑1 (MQ=255)

                                                                                     aCATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAtt    <  1:3330326/93‑1 (MQ=255)

                                                                                      cATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTg   <  1:1783855/93‑1 (MQ=255)

                                                                                      cATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTg   >  2:1761403/1‑93 (MQ=255)

                                                                                       aTTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGa  >  2:2770993/1‑93 (MQ=255)

                                                                                       aTTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGa  >  1:3456781/1‑93 (MQ=255)

GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA  >  NC_000913/4265112‑4265291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAATT  >  NC_000913/4265109‑4265295

CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTG                                                                                               <  SRR4302535.4586750/94‑1 (MQ=60)

 GGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGC                                                                                              >  SRR4302535.3052876/1‑94 (MQ=60)

   GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCT                                                                                            >  SRR4302535.2298569/1‑94 (MQ=60)

   GGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCT                                                                                            <  SRR4302535.1535760/94‑1 (MQ=60)

     CTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGC                                                                                          >  SRR4302535.4601777/1‑94 (MQ=60)

      TGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCC                                                                                         <  SRR4302535.2196686/94‑1 (MQ=60)

      TGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCC                                                                                         >  SRR4302535.3035530/1‑94 (MQ=60)

       GGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCC                                                                                        >  SRR4302535.1191136/1‑94 (MQ=60)

       GGATTCGAAGTGAGCACTTACCCCTGGTATGACGAAGCGAGTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCC                                                                                        >  SRR4302535.1254246/1‑94 (MQ=60)

        GATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGAGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCG                                                                                       <  SRR4302535.3327747/94‑1 (MQ=60)

           TCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAG                                                                                    >  SRR4302535.4242047/1‑94 (MQ=60)

            CGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGT                                                                                   <  SRR4302535.4548879/94‑1 (MQ=60)

            CGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGT                                                                                   >  SRR4302535.1414523/1‑94 (MQ=60)

             GAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACCTTGCCTGCCCGCAGTA                                                                                  >  SRR4302535.2430051/1‑94 (MQ=60)

             GAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGTCCGCAGTA                                                                                  >  SRR4302535.4282664/1‑94 (MQ=60)

             GAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTA                                                                                  <  SRR4302535.4056259/94‑1 (MQ=60)

             GAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTA                                                                                  >  SRR4302535.2813034/1‑94 (MQ=60)

               AGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATT                                                                                <  SRR4302535.769421/94‑1 (MQ=60)

                GTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTG                                                                               <  SRR4302535.4017742/94‑1 (MQ=60)

                GTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTG                                                                               <  SRR4302535.2634472/94‑1 (MQ=60)

                GTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTG                                                                               <  SRR4302535.4702193/94‑1 (MQ=60)

                 TGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGT                                                                              >  SRR4302535.2921358/1‑94 (MQ=60)

                 TGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGT                                                                              >  SRR4302535.1202222/1‑94 (MQ=60)

                  GAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTG                                                                             <  SRR4302535.1687643/94‑1 (MQ=60)

                  GAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTG                                                                             <  SRR4302535.1653611/94‑1 (MQ=60)

                  GAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTG                                                                             <  SRR4302535.2012699/94‑1 (MQ=60)

                   AGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGT                                                                            >  SRR4302535.3393992/1‑94 (MQ=60)

                    GTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTT                                                                           <  SRR4302535.1767286/94‑1 (MQ=60)

                     TACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTG                                                                          <  SRR4302535.2878603/94‑1 (MQ=60)

                      CCTTACCCCTGGTATGACGAAGCGACTAGCGGCGTGCGCTTTAATGACCTGTTGGCGACGCGGAAAACATTGCCTGCCCGCAGTATTGTGTTGC                                                                         <  SRR4302535.678660/94‑1 (MQ=60)

                      ACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGC                                                                         >  SRR4302535.1691272/1‑94 (MQ=60)

                      ACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGC                                                                         >  SRR4302535.1395601/1‑94 (MQ=60)

                       CTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCT                                                                        <  SRR4302535.800303/94‑1 (MQ=60)

                        TTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTG                                                                       >  SRR4302535.306988/1‑94 (MQ=60)

                         TACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGC                                                                      >  SRR4302535.2885158/1‑94 (MQ=60)

                           CCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCAT                                                                    <  SRR4302535.677759/94‑1 (MQ=60)

                           CCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCAT                                                                    <  SRR4302535.4520004/94‑1 (MQ=60)

                            CCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATC                                                                   <  SRR4302535.906587/94‑1 (MQ=60)

                            CCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATC                                                                   >  SRR4302535.1638216/1‑94 (MQ=60)

                             CCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCT                                                                  >  SRR4302535.2579467/1‑94 (MQ=60)

                              CTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCA                                                                 <  SRR4302535.4067271/94‑1 (MQ=60)

                              CTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCA                                                                 >  SRR4302535.626364/1‑94 (MQ=60)

                              CTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCA                                                                 <  SRR4302535.805311/94‑1 (MQ=60)

                               TGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAT                                                                <  SRR4302535.3494988/94‑1 (MQ=60)

                               TGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCAT                                                                <  SRR4302535.1032478/94‑1 (MQ=60)

                                GGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATG                                                               >  SRR4302535.1214616/1‑94 (MQ=60)

                                GGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATG                                                               >  SRR4302535.3929204/1‑94 (MQ=60)

                                 GTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGT                                                              >  SRR4302535.2827049/1‑94 (MQ=60)

                                  TATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTT                                                             <  SRR4302535.1646838/94‑1 (MQ=60)

                                   ATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTG                                                            >  SRR4302535.1941325/1‑94 (MQ=60)

                                     GACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCC                                                          >  SRR4302535.2022096/1‑94 (MQ=60)

                                        GAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACA                                                       >  SRR4302535.379697/1‑94 (MQ=60)

                                        GAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACA                                                       <  SRR4302535.1463027/94‑1 (MQ=60)

                                            CGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCC                                                   >  SRR4302535.3396300/1‑94 (MQ=60)

                                            CGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCC                                                   <  SRR4302535.551647/94‑1 (MQ=60)

                                             GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA                                                  >  SRR4302535.3444044/1‑94 (MQ=60)

                                             GACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCA                                                  >  SRR4302535.372281/1‑94 (MQ=60)

                                              ACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAA                                                 >  SRR4302535.3442083/1‑94 (MQ=60)

                                               CTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAAC                                                <  SRR4302535.702735/94‑1 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                              >  SRR4302535.2243469/1‑94 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                              <  SRR4302535.3814068/94‑1 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                              <  SRR4302535.3734367/94‑1 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                              <  SRR4302535.37047/94‑1 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                              <  SRR4302535.3649090/94‑1 (MQ=60)

                                                 AACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGG                                              >  SRR4302535.3494505/1‑94 (MQ=60)

                                                  ACTGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGG                                             <  SRR4302535.662074/94‑1 (MQ=60)

                                                  ACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGG                                             >  SRR4302535.1167890/1‑94 (MQ=60)

                                                    GGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTG                                           >  SRR4302535.1557352/1‑94 (MQ=60)

                                                    GGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTG                                           <  SRR4302535.3896504/94‑1 (MQ=60)

                                                      CGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCC                                         >  SRR4302535.3380681/1‑94 (MQ=60)

                                                      CGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCC                                         >  SRR4302535.2683396/1‑94 (MQ=60)

                                                       GTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCG                                        >  SRR4302535.579013/1‑94 (MQ=60)

                                                       GTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCG                                        >  SRR4302535.715114/1‑94 (MQ=60)

                                                       GTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCG                                        <  SRR4302535.102359/94‑1 (MQ=60)

                                                       GTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCG                                        <  SRR4302535.2260366/94‑1 (MQ=60)

                                                        TGCGCTTTAATGCCCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGA                                       <  SRR4302535.1919921/94‑1 (MQ=60)

                                                          CGCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGATGCCACAACCCAACGGGTGCCGATC                                     >  SRR4302535.671062/1‑94 (MQ=60)

                                                           GCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCT                                    >  SRR4302535.418827/1‑94 (MQ=60)

                                                           GCTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCT                                    >  SRR4302535.1821853/1‑94 (MQ=60)

                                                            CTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTC                                   <  SRR4302535.1880643/94‑1 (MQ=60)

                                                            CTTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTC                                   >  SRR4302535.216672/1‑94 (MQ=60)

                                                             TTTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCA                                  <  SRR4302535.312842/94‑1 (MQ=60)

                                                              TTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCAC                                 >  SRR4302535.2451875/1‑94 (MQ=60)

                                                              TTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCAC                                 >  SRR4302535.3718861/1‑94 (MQ=60)

                                                              TTAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCAC                                 <  SRR4302535.4343563/94‑1 (MQ=60)

                                                               TAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACT                                <  SRR4302535.1396060/94‑1 (MQ=60)

                                                               TAATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACT                                >  SRR4302535.2778002/1‑94 (MQ=60)

                                                                AATGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTA                               >  SRR4302535.2841863/1‑94 (MQ=60)

                                                                  TGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAT                             <  SRR4302535.3222410/94‑1 (MQ=60)

                                                                  TGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAT                             <  SRR4302535.3803963/94‑1 (MQ=60)

                                                                  TGACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAAT                             >  SRR4302535.3334673/1‑94 (MQ=60)

                                                                   GACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATG                            <  SRR4302535.2719643/94‑1 (MQ=60)

                                                                    ACCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGA                           >  SRR4302535.1949960/1‑94 (MQ=60)

                                                                     CCTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGAT                          <  SRR4302535.2777001/94‑1 (MQ=60)

                                                                      CTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATC                         <  SRR4302535.1625908/94‑1 (MQ=60)

                                                                      CTGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATC                         >  SRR4302535.4164740/1‑94 (MQ=60)

                                                                       TGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCA                        <  SRR4302535.3885098/94‑1 (MQ=60)

                                                                       TGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCA                        <  SRR4302535.1675952/94‑1 (MQ=60)

                                                                       TGTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCA                        <  SRR4302535.35301/94‑1 (MQ=60)

                                                                        GTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAG                       >  SRR4302535.2540309/1‑94 (MQ=60)

                                                                        GTTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAG                       >  SRR4302535.2642034/1‑94 (MQ=60)

                                                                         TTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGT                      <  SRR4302535.207843/94‑1 (MQ=60)

                                                                         TTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGT                      <  SRR4302535.2057949/94‑1 (MQ=60)

                                                                         TTGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGT                      <  SRR4302535.3525253/94‑1 (MQ=60)

                                                                          TGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTG                     <  SRR4302535.1866169/94‑1 (MQ=60)

                                                                          TGGCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTG                     >  SRR4302535.620261/1‑94 (MQ=60)

                                                                            GCGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGG                   <  SRR4302535.2088277/94‑1 (MQ=60)

                                                                             CGACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGA                  >  SRR4302535.806601/1‑94 (MQ=60)

                                                                              GACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAT                 <  SRR4302535.2268270/94‑1 (MQ=60)

                                                                              GACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGAT                 >  SRR4302535.492647/1‑94 (MQ=60)

                                                                               ACGCTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATG                <  SRR4302535.4441727/94‑1 (MQ=60)

                                                                                  CTGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGG             >  SRR4302535.1250337/1‑94 (MQ=60)

                                                                                   TGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGT            >  SRR4302535.3683558/1‑94 (MQ=60)

                                                                                   CGAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGT            <  SRR4302535.3272915/94‑1 (MQ=60)

                                                                                    GAAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTG           >  SRR4302535.2571546/1‑94 (MQ=60)

                                                                                     AAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGA          >  SRR4302535.3640141/1‑94 (MQ=60)

                                                                                     AAAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTAGCCAGAACCCAACGGGTGCCGATCTCACTAATGGTCAGTGGGATGGGGTGA          >  SRR4302535.3640140/1‑94 (MQ=60)

                                                                                      AAACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGAT         >  SRR4302535.4069138/1‑94 (MQ=60)

                                                                                       AACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATT        >  SRR4302535.3167596/1‑94 (MQ=60)

                                                                                       AACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATT        <  SRR4302535.880523/94‑1 (MQ=60)

                                                                                        ACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTG       <  SRR4302535.4327154/94‑1 (MQ=60)

                                                                                        ACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTG       <  SRR4302535.2716844/94‑1 (MQ=60)

                                                                                        ACATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTG       <  SRR4302535.3353506/94‑1 (MQ=60)

                                                                                         CATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA      <  SRR4302535.1796764/94‑1 (MQ=60)

                                                                                         CATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA      >  SRR4302535.3776802/1‑94 (MQ=60)

                                                                                         CATTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGA      >  SRR4302535.3480810/1‑94 (MQ=60)

                                                                                           TTGCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAA    >  SRR4302535.339904/1‑94 (MQ=60)

                                                                                             GCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAATT  >  SRR4302535.3097522/1‑94 (MQ=60)

                                                                                             GCCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAATT  <  SRR4302535.145815/94‑1 (MQ=60)

CGGGGCTGGATTCGAAGTGAGTACTTACCCCTGGTATGACGAAGCGACTAACGGCGTGCGCTTTAATGACCTGTTGGCGACGCTGAAAACATTACCTGCCCGCAGTATTGTGTTGCTGCATCCATGTTGCCACAACCCAACGGGTGCCGATCTCACTAATGATCAGTGGGATGCGGTGATTGAAATT  >  NC_000913/4265109‑4265295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`