Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,284,295 A→G V219A (GTA→GCA)  acs ← acetyl‑CoA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,284,2950AG100.0% 590.5 / NA 187V219A (GTA→GCA) acsacetyl‑CoA synthetase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (95/92);  total (95/92)

Only 100 of 197 total aligned reads displayed.

TGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACA  >  NC_000913/4284205‑4284384
                                                                                          |                                                                                         
 ggTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTgcca                                                                                        >  2:663159/1‑93 (MQ=255)
 ggTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTgcca                                                                                        <  2:4517846/93‑1 (MQ=255)
 ggTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTgcca                                                                                        >  2:4233143/1‑93 (MQ=255)
   tGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTgccacc                                                                                      >  1:4080657/1‑93 (MQ=255)
    gCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGccacca                                                                                     >  2:494594/1‑93 (MQ=255)
      tgttcgctcgcTTGCTCACCCAGGTCGTCCCACCACAGGTCGCGCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACcaca                                                                                   <  2:1130037/90‑1 (MQ=255)
      tGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACcaca                                                                                   >  1:836191/1‑93 (MQ=255)
        aTCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATg                                                                                 >  1:1123993/1‑93 (MQ=255)
         tcgctcgcTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGc                                                                                <  1:1713960/93‑1 (MQ=255)
         tcgctcgcTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGc                                                                                >  1:2159932/1‑93 (MQ=255)
           gctcgctTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGctc                                                                              >  1:412089/1‑93 (MQ=255)
            ctcgctTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGctct                                                                             >  1:2862690/1‑93 (MQ=255)
            ctcgctTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGctct                                                                             >  1:3554000/1‑93 (MQ=255)
                ctTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGc                                                                         >  1:515408/1‑93 (MQ=255)
                ctTGCACACCCAGGTCGTCCCACCACGGGTCGCCCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGc                                                                         <  1:2408557/93‑1 (MQ=255)
                ctTCCTCACCCAGGCCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGc                                                                         <  2:4664107/93‑1 (MQ=255)
                  tGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTg                                                                       >  2:923749/1‑93 (MQ=255)
                   gCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTgg                                                                      >  2:2555893/1‑93 (MQ=255)
                    cccAACCAGGCCGGGCCCCCAGAGGTCGCGCCCTCCCTGCCAGTCATTTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGt                                                                     <  2:3247140/91‑1 (MQ=255)
                    cTCACCCAGGTCGTCCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGt                                                                     <  1:996960/93‑1 (MQ=255)
                    cTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGt                                                                     >  2:1789381/1‑93 (MQ=255)
                     taaaCCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTg                                                                    >  2:4490503/3‑93 (MQ=255)
                     tCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTg                                                                    >  2:4128421/1‑93 (MQ=255)
                     ccAACCAGGTCGTCCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTg                                                                    <  2:2918996/92‑1 (MQ=255)
                      cacccAGGTCGTGCCACCACGGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGa                                                                   <  2:3598020/90‑1 (MQ=255)
                      cAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGa                                                                   <  2:1469249/93‑1 (MQ=255)
                      cAACCAGGTCGTCCCACCACAGGTCGCGCCCTTCCTCCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGa                                                                   <  1:2355439/93‑1 (MQ=255)
                             gtggTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCgg                                                            <  1:3162861/90‑1 (MQ=255)
                             gccGTCCCCCCACAGGTCGCGCCTTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCgg                                                            <  2:4531436/91‑1 (MQ=255)
                               cgccccaccaCAGGCCGCCCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGt                                                          <  2:2805354/89‑1 (MQ=255)
                                gtcccaccaCAGGTCCCGCCCGTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGtt                                                         <  1:2701131/90‑1 (MQ=255)
                                  gCCACCACAGGCCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGtttt                                                       <  1:2237705/93‑1 (MQ=255)
                                     cccacAGGCCCCCCCCTCCCTGCCAGTCATTTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCa                                                    <  1:3947915/92‑1 (MQ=255)
                                     accacAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCa                                                    >  2:3388430/1‑93 (MQ=255)
                                      ccacAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAg                                                   >  1:2221949/1‑93 (MQ=255)
                                      cacaaGGTCGCCCCTTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAg                                                   <  2:396272/89‑1 (MQ=255)
                                        acaGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAgcg                                                 >  2:3438869/1‑93 (MQ=255)
                                        acaGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAgcg                                                 >  2:4181167/1‑93 (MQ=255)
                                         caGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAgcgc                                                >  2:3997508/1‑93 (MQ=255)
                                           ggTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGt                                              >  2:4301590/1‑93 (MQ=255)
                                            gTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGtc                                             >  2:3765348/1‑93 (MQ=255)
                                             tCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGtca                                            >  1:4664929/1‑93 (MQ=255)
                                                cgcCTTTCCTGCCAGCCATTTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGtcatca                                         <  2:2679671/93‑1 (MQ=255)
                                                cgcCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGtcatca                                         <  2:3844157/93‑1 (MQ=255)
                                                 gcCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCaa                                        >  1:4255084/1‑93 (MQ=255)
                                                  ccctccctGCCAGTCAATTTACCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAAc                                       <  1:3728477/93‑1 (MQ=255)
                                                  cccTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAAc                                       >  1:3116826/1‑93 (MQ=255)
                                                  cccTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAAc                                       >  1:2363324/1‑93 (MQ=255)
                                                    cTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGt                                     >  2:707746/1‑93 (MQ=255)
                                                     tcccTGCCAGTCAATTTGCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGtt                                    <  2:2244939/91‑1 (MQ=255)
                                                     tcccTGCCAGTAATTTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGtt                                    <  1:1152822/91‑1 (MQ=255)
                                                      tCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGttt                                   >  1:3919103/1‑93 (MQ=255)
                                                       ccTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGtttt                                  >  1:4406560/1‑93 (MQ=255)
                                                        cggCCAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGttttt                                 <  2:3004264/91‑1 (MQ=255)
                                                        cTGCCAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGttttt                                 <  1:4183709/93‑1 (MQ=255)
                                                         tGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTttc                                >  1:37401/1‑93 (MQ=255)
                                                         tGCCAGAAAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTttc                                <  2:2361017/93‑1 (MQ=255)
                                                          gCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTttct                               <  1:3316272/93‑1 (MQ=255)
                                                          cccAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTttct                               <  1:2933510/92‑1 (MQ=255)
                                                           ccAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTttctt                              >  1:3736902/1‑93 (MQ=255)
                                                           ccAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGGTTTTCAGCGCGTCATCAACGTTTttctt                              >  1:1435152/1‑93 (MQ=255)
                                                            cAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTttcttc                             <  2:4572052/93‑1 (MQ=255)
                                                             aGTCATTTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCa                            <  1:3281603/93‑1 (MQ=255)
                                                             aGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCa                            >  2:4468886/1‑93 (MQ=255)
                                                             aGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCa                            <  1:2466939/93‑1 (MQ=255)
                                                             aGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCa                            >  2:3562536/1‑93 (MQ=255)
                                                             aGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCa                            <  2:526373/93‑1 (MQ=255)
                                                               tCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGc                          >  1:4002699/1‑93 (MQ=255)
                                                                cAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCg                         <  1:756765/93‑1 (MQ=255)
                                                                ataTTCTCCCGCCAGTACGCTTCAGTGCCACCGCATGCTCTACGCTGGTGGCGTTCGGGTTTTTCAGCGCCTCATCAACGTTTTTCTTCAGCg                         <  2:3161765/91‑1 (MQ=255)
                                                                 atttttCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCgg                        <  2:1755478/91‑1 (MQ=255)
                                                                   ttttCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGaa                      >  2:241929/1‑93 (MQ=255)
                                                                   tttcCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGaa                      <  1:3445907/93‑1 (MQ=255)
                                                                    tttCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAAt                     >  1:1351159/1‑93 (MQ=255)
                                                                    tcccccGCCAGTACGCTTCGGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAAt                     <  2:117187/90‑1 (MQ=255)
                                                                     tccccGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATa                    <  1:4021888/91‑1 (MQ=255)
                                                                       cccGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACt                  <  1:1858527/93‑1 (MQ=255)
                                                                          gCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGGTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTgcg               <  1:1883198/93‑1 (MQ=255)
                                                                           ccAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTgcgc              >  1:2572888/1‑93 (MQ=255)
                                                                            cAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGAGcc             >  1:324070/1‑93 (MQ=255)
                                                                             aGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGccc            >  2:2470979/1‑93 (MQ=255)
                                                                             aGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGccc            <  2:572916/93‑1 (MQ=255)
                                                                             aGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGccc            <  2:1710115/93‑1 (MQ=255)
                                                                             aGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGccc            >  1:1387728/1‑93 (MQ=255)
                                                                             aGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGccc            >  2:4439106/1‑93 (MQ=255)
                                                                              gTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCg           >  1:1239122/1‑93 (MQ=255)
                                                                              gTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCg           >  2:1046391/1‑93 (MQ=255)
                                                                               tACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCgg          >  2:3029222/1‑93 (MQ=255)
                                                                               tACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCgg          >  1:3019825/1‑93 (MQ=255)
                                                                                aCGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGgc         <  2:1212625/93‑1 (MQ=255)
                                                                                  gCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGgcac       >  1:1592199/1‑93 (MQ=255)
                                                                                   cTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGgcacg      >  1:2312533/1‑93 (MQ=255)
                                                                                    ttCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGgcacgc     >  2:4436594/1‑93 (MQ=255)
                                                                                    ttCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGgcacgc     >  1:1919741/1‑93 (MQ=255)
                                                                                    ttCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGgcacgc     >  1:2529444/1‑93 (MQ=255)
                                                                                     tCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGgcacgca    <  2:1634028/93‑1 (MQ=255)
                                                                                      cAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGgcacgcac   <  1:1314723/93‑1 (MQ=255)
                                                                                       aGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGGGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGcgca  >  2:2003321/1‑93 (MQ=255)
                                                                                       aGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGcaca  <  1:632921/93‑1 (MQ=255)
                                                                                       aGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGcaca  <  2:2291749/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACA  >  NC_000913/4284205‑4284384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACACCTT  >  NC_000913/4284202‑4284388
                                                                                             |                                                                                             
gccgggcgcttcTCGCTCGCTTGCTCAACCGGGTCGTCCCCCCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTG                                                                                               <  SRR4302535.122967/82‑1 (MQ=60)
GCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTG                                                                                               >  SRR4302535.2656799/1‑94 (MQ=60)
 CCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGC                                                                                              >  SRR4302535.831427/1‑94 (MQ=60)
 CCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGC                                                                                              >  SRR4302535.1933630/1‑94 (MQ=60)
  CTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCC                                                                                             >  SRR4302535.1208302/1‑94 (MQ=60)
  CTGGTGCTGATCGCTCGCTTGCTCAACCAGGCCGTGCCACCACAGGTCGCGCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCC                                                                                             <  SRR4302535.1364490/94‑1 (MQ=60)
     GTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACC                                                                                          >  SRR4302535.4108570/1‑94 (MQ=60)
      tgctcctcgctcgtttgccaacCCAGGCCGTGCCCCCACAGGTCGCGCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCA                                                                                         <  SRR4302535.355171/72‑1 (MQ=60)
        CTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACA                                                                                       >  SRR4302535.842057/1‑94 (MQ=60)
        CTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCACGCCAGTACGCTTCAGTGCCACCACA                                                                                       >  SRR4302535.3763461/1‑94 (MQ=60)
         TGATCGCTCGCTTGCTCACCCAGGTCGTGCCCCCACAGGTCGCGCCCTTCCTGCCAGTCATTTTTCCCGCCAGTACGCTTCAGTGCCACCACAT                                                                                      <  SRR4302535.2537262/94‑1 (MQ=60)
          GATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATG                                                                                     >  SRR4302535.1132015/1‑94 (MQ=60)
          GATCGCTCGCTTGCTCAACCAGGTCGTCCCACCACAGGTCGCCCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATG                                                                                     <  SRR4302535.4277803/94‑1 (MQ=60)
           ATCGCTCGCTTGCTCAACCAGGTCGTGCCACCCCAGGTCGCGCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGC                                                                                    <  SRR4302535.2302583/94‑1 (MQ=60)
           ATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGC                                                                                    >  SRR4302535.66088/1‑94 (MQ=60)
           ATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGC                                                                                    >  SRR4302535.2175443/1‑94 (MQ=60)
            TCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCT                                                                                   <  SRR4302535.1726353/94‑1 (MQ=60)
             CGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTC                                                                                  >  SRR4302535.414985/1‑94 (MQ=60)
              GCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCT                                                                                 >  SRR4302535.3578658/1‑94 (MQ=60)
              GCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCT                                                                                 >  SRR4302535.3999595/1‑94 (MQ=60)
              GCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCT                                                                                 >  SRR4302535.2882971/1‑94 (MQ=60)
              GCTCGCTTGCTCAACCAGGTCGTCCCCCCACAGGTCGCGCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCT                                                                                 <  SRR4302535.2776734/94‑1 (MQ=60)
                 CGCTTCCTCACCCAGGTCGTCCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACG                                                                              <  SRR4302535.3310179/94‑1 (MQ=60)
                  GCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGC                                                                             >  SRR4302535.3820093/1‑94 (MQ=60)
                  GCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGC                                                                             >  SRR4302535.519009/1‑94 (MQ=60)
                   CTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCT                                                                            >  SRR4302535.2375171/1‑94 (MQ=60)
                   CTTGCACACCCAGGTCGTCCCACCACGGGTCGCCCCCTCCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCT                                                                            <  SRR4302535.2425897/94‑1 (MQ=60)
                       CTCACCCAGGTCGTCCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTG                                                                        <  SRR4302535.1004038/94‑1 (MQ=60)
                         CAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGAC                                                                      <  SRR4302535.564224/94‑1 (MQ=60)
                         CAACCAGGTCGTCCCACCACAGGTCGCGCCCTTCCTCCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGAC                                                                      <  SRR4302535.2372330/94‑1 (MQ=60)
                                GTGGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGG                                                               <  SRR4302535.3184797/94‑1 (MQ=60)
                                  CGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTT                                                             >  SRR4302535.1588086/1‑94 (MQ=60)
                                   GTCCCACCACAGGTCCCGCCCGTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTT                                                            <  SRR4302535.2720429/94‑1 (MQ=60)
                                     GCCACCACAGGCCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTT                                                          <  SRR4302535.2253626/94‑1 (MQ=60)
                                        cccacaggcccccccctcCCTGCCAGTCATTTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAG                                                       <  SRR4302535.3974868/76‑1 (MQ=60)
                                        ACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAG                                                       >  SRR4302535.2237766/1‑94 (MQ=60)
                                         CCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGC                                                      >  SRR4302535.782348/1‑94 (MQ=60)
                                          ccacgtcgcccccccTCCTGCCGGTAAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCG                                                     <  SRR4302535.3077572/79‑1 (MQ=60)
                                          CACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCG                                                     >  SRR4302535.3021061/1‑94 (MQ=60)
                                          CACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCG                                                     >  SRR4302535.2239974/1‑94 (MQ=60)
                                            CAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCG                                                   >  SRR4302535.503506/1‑94 (MQ=60)
                                               GTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCA                                                >  SRR4302535.4696467/1‑94 (MQ=60)
                                               GTCGCCCCCTGCCTGCCAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCA                                                <  SRR4302535.396233/94‑1 (MQ=60)
                                                 CGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATC                                              >  SRR4302535.188056/1‑94 (MQ=60)
                                                   CGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAA                                            >  SRR4302535.4284235/1‑94 (MQ=60)
                                                    GCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAAC                                           >  SRR4302535.3220155/1‑94 (MQ=60)
                                                    GCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAAC                                           >  SRR4302535.3351826/1‑94 (MQ=60)
                                                    GCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAAC                                           >  SRR4302535.2380298/1‑94 (MQ=60)
                                                    GCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAAC                                           >  SRR4302535.3138525/1‑94 (MQ=60)
                                                    CCCCTCCCTGCCAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAAC                                           <  SRR4302535.1349253/94‑1 (MQ=60)
                                                     CCTTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACG                                          <  SRR4302535.1426533/94‑1 (MQ=60)
                                                     CCCTCCCTGCCAGTCAATTTACCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACG                                          <  SRR4302535.3754302/94‑1 (MQ=60)
                                                      CCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGT                                         >  SRR4302535.2481593/1‑94 (MQ=60)
                                                      CCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGT                                         >  SRR4302535.2380843/1‑94 (MQ=60)
                                                        TTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTT                                       >  SRR4302535.3945907/1‑94 (MQ=60)
                                                        TCCCTGCCAGTAATTTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTT                                       <  SRR4302535.1161061/94‑1 (MQ=60)
                                                         TCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTT                                      >  SRR4302535.4436718/1‑94 (MQ=60)
                                                         TCCTGCCAGTAAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTT                                      <  SRR4302535.3120612/94‑1 (MQ=60)
                                                           CTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTC                                    >  SRR4302535.37690/1‑94 (MQ=60)
                                                           CTGCCAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTC                                    <  SRR4302535.4212335/94‑1 (MQ=60)
                                                            TGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCT                                   <  SRR4302535.3559065/94‑1 (MQ=60)
                                                             GCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTT                                  >  SRR4302535.3762766/1‑94 (MQ=60)
                                                             GCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTT                                  <  SRR4302535.3339346/94‑1 (MQ=60)
                                                             GCCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGGTTTTCAGCGCGTCATCAACGTTTTTCTT                                  >  SRR4302535.1445401/1‑94 (MQ=60)
                                                             CCCAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTT                                  <  SRR4302535.2954158/94‑1 (MQ=60)
                                                              CCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTC                                 >  SRR4302535.1913174/1‑94 (MQ=60)
                                                              CCAGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGCTTTTCTTC                                 >  SRR4302535.4152246/1‑94 (MQ=60)
                                                              CAAGTCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTC                                 <  SRR4302535.4038468/94‑1 (MQ=60)
                                                               CAGTAAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCA                                <  SRR4302535.4463026/94‑1 (MQ=60)
                                                                agacaattccCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGGGTCATCAACGTTTTTCTTCAG                               <  SRR4302535.1381557/84‑1 (MQ=60)
                                                                CGTCATTTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAG                               <  SRR4302535.3679489/94‑1 (MQ=60)
                                                                AGTCATTTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAG                               <  SRR4302535.3304393/94‑1 (MQ=60)
                                                                AGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAG                               >  SRR4302535.953307/1‑94 (MQ=60)
                                                                AGTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAG                               <  SRR4302535.2484721/94‑1 (MQ=60)
                                                                 GTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCATC                              >  SRR4302535.3266183/1‑94 (MQ=60)
                                                                 GTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGC                              <  SRR4302535.2657371/94‑1 (MQ=60)
                                                                 GTCAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGC                              >  SRR4302535.4030078/1‑94 (MQ=60)
                                                                  TCAATTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCG                             <  SRR4302535.412773/94‑1 (MQ=60)
                                                                   CAATTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGG                            <  SRR4302535.762092/94‑1 (MQ=60)
                                                                      TTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAAT                         <  SRR4302535.170799/94‑1 (MQ=60)
                                                                      TTTTCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAAT                         >  SRR4302535.1360833/1‑94 (MQ=60)
                                                                      TTTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAAT                         <  SRR4302535.3469866/94‑1 (MQ=60)
                                                                       TTCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATA                        <  SRR4302535.2568403/94‑1 (MQ=60)
                                                                        TCCCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATAC                       <  SRR4302535.4049408/94‑1 (MQ=60)
                                                                          CCCGCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTG                     <  SRR4302535.1871929/94‑1 (MQ=60)
                                                                             GCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGC                  >  SRR4302535.2591379/1‑94 (MQ=60)
                                                                             GCCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGGTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGC                  <  SRR4302535.1896771/94‑1 (MQ=60)
                                                                              CCAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGAGCC                 >  SRR4302535.326308/1‑94 (MQ=60)
                                                                               CAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCC                <  SRR4302535.4085256/94‑1 (MQ=60)
                                                                               CAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCC                >  SRR4302535.1397632/1‑94 (MQ=60)
                                                                               CAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCC                >  SRR4302535.3173973/1‑94 (MQ=60)
                                                                               CAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCC                >  SRR4302535.2361230/1‑94 (MQ=60)
                                                                               CAGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCC                >  SRR4302535.4359275/1‑94 (MQ=60)
                                                                                AGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCG               >  SRR4302535.1760029/1‑94 (MQ=60)
                                                                                AGTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCG               >  SRR4302535.1247968/1‑94 (MQ=60)
                                                                                 GTACGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGG              >  SRR4302535.3040975/1‑94 (MQ=60)
                                                                                    CGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCAC           <  SRR4302535.2177702/94‑1 (MQ=60)
                                                                                    CGCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCAC           >  SRR4302535.1603687/1‑94 (MQ=60)
                                                                                     GCTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACG          >  SRR4302535.2329086/1‑94 (MQ=60)
                                                                                      CTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCGCGGCACGC         >  SRR4302535.2053109/1‑94 (MQ=60)
                                                                                      CTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGC         >  SRR4302535.1933579/1‑94 (MQ=60)
                                                                                      CTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGC         >  SRR4302535.2547667/1‑94 (MQ=60)
                                                                                      CTTCAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGC         >  SRR4302535.2928199/1‑94 (MQ=60)
                                                                                         CAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACA      <  SRR4302535.1324116/94‑1 (MQ=60)
                                                                                         CAGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACA      <  SRR4302535.1300568/94‑1 (MQ=60)
                                                                                          AGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACAC     >  SRR4302535.4277454/1‑94 (MQ=60)
                                                                                          AGTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACAC     <  SRR4302535.637330/94‑1 (MQ=60)
                                                                                           GTGCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACACC    >  SRR4302535.4333306/1‑94 (MQ=60)
                                                                                             GCCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACACCTT  <  SRR4302535.2899461/94‑1 (MQ=60)
                                                                                             |                                                                                             
GCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGGGTTTTTCAGCGCGTCATCAACGTTTTTCTTCAGCGGAATACTGCGCCCGGCACGCACACCTT  >  NC_000913/4284202‑4284388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑