Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,300,903 |
A→G |
G262G (GGT→GGC) |
yjcR ← |
putative membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,300,903 | 0 | A | G | 99.5%
| 676.6
/ NA
| 217 | G262G (GGT→GGC) | yjcR | putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (108/108); total (108/109) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 228 total aligned reads displayed.
GTCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTACCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCAT > NC_000913/4300813‑4300992
|
cATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTg > 1:3028109/1‑93 (MQ=255)
aTCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGa < 2:791922/93‑1 (MQ=255)
aTCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGa > 2:1141210/1‑93 (MQ=255)
aTCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGa < 2:1102017/93‑1 (MQ=255)
aTCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGa < 1:1682940/93‑1 (MQ=255)
aTCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGa > 1:2612717/1‑93 (MQ=255)
tCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGATGTGCCTGAg > 2:1538816/1‑93 (MQ=255)
ccGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGc < 2:954176/93‑1 (MQ=255)
ccGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGc < 1:2867087/93‑1 (MQ=255)
gTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGaa < 1:130727/93‑1 (MQ=255)
gTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGaa > 1:892972/1‑93 (MQ=255)
tAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAat < 1:1105953/93‑1 (MQ=255)
tAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAat < 1:405951/93‑1 (MQ=255)
tAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAat < 1:2838378/93‑1 (MQ=255)
tAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAat > 1:2189927/1‑93 (MQ=255)
aGCACGCCGTAGCCAATCGAATCCGCTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAata < 2:1246573/93‑1 (MQ=255)
aGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAata < 1:2230184/93‑1 (MQ=255)
aGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAata < 1:324089/93‑1 (MQ=255)
gCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAatat > 1:3393548/1‑93 (MQ=255)
gCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAatat > 1:3337688/1‑93 (MQ=255)
aCGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATAttt > 2:4338460/1‑93 (MQ=255)
cGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATAtttt > 2:1859454/1‑93 (MQ=255)
cGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATAtttt > 2:2995079/1‑93 (MQ=255)
ccGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTc < 1:968082/93‑1 (MQ=255)
tAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGa > 2:1351328/1‑93 (MQ=255)
tAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGa < 1:1335211/93‑1 (MQ=255)
tAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCAAATATTTTTCAGa > 2:2158519/1‑93 (MQ=255)
aGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGAt < 1:2504927/93‑1 (MQ=255)
ccAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCg > 1:3762390/1‑93 (MQ=255)
ccAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCg < 2:3949138/93‑1 (MQ=255)
cAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCgg > 1:4486579/1‑93 (MQ=255)
aaTCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGt > 1:1137689/1‑93 (MQ=255)
aaTCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGt > 2:4121863/1‑93 (MQ=255)
aTCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGtt < 2:2903846/93‑1 (MQ=255)
aTCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGtt > 2:3168442/1‑93 (MQ=255)
aTCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGtt < 2:4242080/93‑1 (MQ=255)
aTCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGtt > 1:1183969/1‑93 (MQ=255)
aTCGAATCCACTTTACCCTCGAAGGTTTTACCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGtt < 2:4601253/93‑1 (MQ=255)
tCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTACCTGAGCGAATATTTTTCAGATCGGttt < 1:4399345/93‑1 (MQ=255)
tCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGCCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGttt < 2:3781270/93‑1 (MQ=255)
aaTCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTcgc > 2:1443841/1‑93 (MQ=255)
aaTCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTcgc > 1:2018586/1‑93 (MQ=255)
aTCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTcgcg > 1:1518044/1‑93 (MQ=255)
aTCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTcgcg > 2:358218/1‑93 (MQ=255)
tCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCgg > 2:3004651/1‑93 (MQ=255)
tCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCgg > 2:224842/1‑93 (MQ=255)
aCTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAg > 1:553777/1‑93 (MQ=255)
cTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGt > 1:4598685/1‑93 (MQ=255)
cTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGt < 2:1961934/93‑1 (MQ=255)
cTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGt > 1:2035790/1‑93 (MQ=255)
tttGCCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGtt < 1:3904639/93‑1 (MQ=255)
tttACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGtt > 1:4609646/1‑93 (MQ=255)
tttACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGtt > 2:2799397/1‑93 (MQ=255)
tttACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGCGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGtt < 2:1820395/93‑1 (MQ=255)
tACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTgg < 1:2713250/93‑1 (MQ=255)
tACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTgg < 1:2355864/93‑1 (MQ=255)
aCCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGc < 2:2608598/93‑1 (MQ=255)
aCCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTAGc > 2:3425668/1‑93 (MQ=255)
ccgtCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCg > 2:3122961/4‑93 (MQ=255)
cccTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCg > 1:1922243/1‑93 (MQ=255)
ccTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGa > 2:4266446/1‑93 (MQ=255)
ccTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGa > 1:3102871/1‑93 (MQ=255)
cTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGAt > 2:638585/1‑93 (MQ=255)
tCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATc > 2:896199/1‑93 (MQ=255)
tCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATc > 2:2888397/1‑93 (MQ=255)
tCGAAGGTATTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATc > 2:4566999/1‑93 (MQ=255)
gAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATcac > 1:3597289/1‑93 (MQ=255)
aGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACAt > 1:1015008/1‑93 (MQ=255)
ggTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATa > 2:4015714/1‑93 (MQ=255)
cgTTTTGCCGCTGCCACTCATCAGGCGGATCGTTGCCGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTCGGCGATCGCATa < 2:601217/92‑1 (MQ=255)
tttGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCa < 2:3518487/93‑1 (MQ=255)
tttGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCa < 2:1413484/93‑1 (MQ=255)
ttGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAg < 1:1356223/93‑1 (MQ=255)
gCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTg > 2:521479/1‑93 (MQ=255)
cTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGa > 1:1707746/1‑93 (MQ=255)
tGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAg < 2:2521758/93‑1 (MQ=255)
tGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTCGCGATCACATACCAGTGACGAg > 1:91711/1‑93 (MQ=255)
gTCTCTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAgt < 2:2041667/93‑1 (MQ=255)
tCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAgtg < 2:3249119/93‑1 (MQ=255)
cACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAgtgt < 1:2333599/93‑1 (MQ=255)
aCTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTc > 1:3814983/1‑93 (MQ=255)
aCTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTc > 2:4358353/1‑93 (MQ=255)
tcatcaGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGa < 2:4505944/93‑1 (MQ=255)
atcaGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGAtt < 2:3308529/93‑1 (MQ=255)
atcaGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGAtt > 1:367004/1‑93 (MQ=255)
tcaGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTa < 1:4195941/93‑1 (MQ=255)
aGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAgg < 2:2439243/93‑1 (MQ=255)
ggCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAggg > 2:2484480/1‑93 (MQ=255)
cGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTa < 2:3383294/93‑1 (MQ=255)
tCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGTGTaaaaa > 1:257592/1‑93 (MQ=255)
tCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTaaaaa < 1:3835396/93‑1 (MQ=255)
tCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTaaaaa > 1:2401401/1‑93 (MQ=255)
cGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAAt < 2:4645500/93‑1 (MQ=255)
cGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAAt < 2:2712619/93‑1 (MQ=255)
gTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATa > 2:1674755/1‑93 (MQ=255)
cGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGgc < 1:675779/93‑1 (MQ=255)
gggTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGgcg < 1:432223/93‑1 (MQ=255)
gtgtGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCa > 2:17648/1‑93 (MQ=255)
tgtgCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCAt < 1:4684796/93‑1 (MQ=255)
tgtgCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCAt < 2:2313318/93‑1 (MQ=255)
|
GTCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTACCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCAT > NC_000913/4300813‑4300992
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCGTCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTACCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCATGGCA > NC_000913/4300810‑4300996
|
GCCGTCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTG > SRR4302535.2877824/1‑94 (MQ=60)
GCCGTCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTG < SRR4302535.2240120/94‑1 (MQ=60)
GTCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCT < SRR4302535.2543840/94‑1 (MQ=60)
TCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTG > SRR4302535.3049307/1‑94 (MQ=60)
TCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTG > SRR4302535.389579/1‑94 (MQ=60)
CATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGA > SRR4302535.2631456/1‑94 (MQ=60)
ATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAG < SRR4302535.1695130/94‑1 (MQ=60)
TCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGC < SRR4302535.2871301/94‑1 (MQ=60)
TCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGC < SRR4302535.3842791/94‑1 (MQ=60)
CCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCG < SRR4302535.2887396/94‑1 (MQ=60)
GGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAA > SRR4302535.899300/1‑94 (MQ=60)
GGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAA < SRR4302535.3855057/94‑1 (MQ=60)
GTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAAT > SRR4302535.2205518/1‑94 (MQ=60)
GTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAAT < SRR4302535.131644/94‑1 (MQ=60)
GTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAAT < SRR4302535.4230230/94‑1 (MQ=60)
TAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATA < SRR4302535.2364285/94‑1 (MQ=60)
TAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATA < SRR4302535.408793/94‑1 (MQ=60)
TAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATA < SRR4302535.478546/94‑1 (MQ=60)
TAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATA < SRR4302535.1113854/94‑1 (MQ=60)
TAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATA < SRR4302535.2858516/94‑1 (MQ=60)
AGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATAT < SRR4302535.2246043/94‑1 (MQ=60)
AGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATAT > SRR4302535.3360935/1‑94 (MQ=60)
AGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATAT < SRR4302535.326327/94‑1 (MQ=60)
AGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATAT > SRR4302535.3417159/1‑94 (MQ=60)
AGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATAT < SRR4302535.43642/94‑1 (MQ=60)
CACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTT < SRR4302535.3549221/94‑1 (MQ=60)
ACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTT < SRR4302535.931487/94‑1 (MQ=60)
CCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCA < SRR4302535.974962/94‑1 (MQ=60)
TAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGAT < SRR4302535.2634436/94‑1 (MQ=60)
TAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGAT < SRR4302535.1344736/94‑1 (MQ=60)
AGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATC > SRR4302535.4634357/1‑94 (MQ=60)
AGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATC < SRR4302535.2522986/94‑1 (MQ=60)
GCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCG < SRR4302535.1921849/94‑1 (MQ=60)
GCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCG > SRR4302535.3788385/1‑94 (MQ=60)
CCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGG > SRR4302535.4517379/1‑94 (MQ=60)
CAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGT > SRR4302535.1145802/1‑94 (MQ=60)
AATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTT > SRR4302535.1192427/1‑94 (MQ=60)
ATCGAATCCACTTTACCCTCGTAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTT < SRR4302535.2377385/94‑1 (MQ=60)
TCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTC < SRR4302535.12809/94‑1 (MQ=60)
TCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTC < SRR4302535.2455281/94‑1 (MQ=60)
TCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTACCTGAGCGAATATTTTTCAGATCGGTTTC < SRR4302535.4429456/94‑1 (MQ=60)
CGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCG > SRR4302535.4686673/1‑94 (MQ=60)
CGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCG < SRR4302535.1697692/94‑1 (MQ=60)
CGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCG > SRR4302535.201251/1‑94 (MQ=60)
GAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGCATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGC > SRR4302535.402309/1‑94 (MQ=60)
GAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGC > SRR4302535.2033131/1‑94 (MQ=60)
AATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCG > SRR4302535.1528978/1‑94 (MQ=60)
ATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTTGCGG > SRR4302535.4510570/1‑94 (MQ=60)
ATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGG > SRR4302535.915035/1‑94 (MQ=60)
CCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAA > SRR4302535.474641/1‑94 (MQ=60)
CACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAG > SRR4302535.557652/1‑94 (MQ=60)
CACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAG < SRR4302535.3072569/94‑1 (MQ=60)
CACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAG > SRR4302535.2456439/1‑94 (MQ=60)
ACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGGTCGGTTTCGCGGAAGT > SRR4302535.682325/1‑94 (MQ=60)
ACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGT > SRR4302535.4629967/1‑94 (MQ=60)
ACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGT > SRR4302535.2050454/1‑94 (MQ=60)
CTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTT > SRR4302535.4640968/1‑94 (MQ=60)
CTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTT > SRR4302535.2261973/1‑94 (MQ=60)
TTTGCCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTG < SRR4302535.3931383/94‑1 (MQ=60)
TTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTG > SRR4302535.1180255/1‑94 (MQ=60)
TTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTG < SRR4302535.1510662/94‑1 (MQ=60)
TACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGC < SRR4302535.2372756/94‑1 (MQ=60)
TACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGC < SRR4302535.2732635/94‑1 (MQ=60)
ACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCG > SRR4302535.1936099/1‑94 (MQ=60)
CCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGA > SRR4302535.1568262/1‑94 (MQ=60)
CCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGA > SRR4302535.3124472/1‑94 (MQ=60)
CCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGAT > SRR4302535.4106256/1‑94 (MQ=60)
CCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGAC > SRR4302535.459635/1‑94 (MQ=60)
CTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATC > SRR4302535.3704264/1‑94 (MQ=60)
CCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCA < SRR4302535.2244320/94‑1 (MQ=60)
CGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCAC > SRR4302535.3622254/1‑94 (MQ=60)
CGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGGTGGCGATCAC > SRR4302535.2603668/1‑94 (MQ=60)
AAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACAT > SRR4302535.1022226/1‑94 (MQ=60)
AGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATA > SRR4302535.1358316/1‑94 (MQ=60)
GGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATAC < SRR4302535.1102199/94‑1 (MQ=60)
TTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGT < SRR4302535.1365928/94‑1 (MQ=60)
TGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTG > SRR4302535.613447/1‑94 (MQ=60)
CGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACG > SRR4302535.1937972/1‑94 (MQ=60)
CGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACG > SRR4302535.941800/1‑94 (MQ=60)
GCTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGA > SRR4302535.1720092/1‑94 (MQ=60)
CTGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTCGCGATCACATACCAGTGACGAG > SRR4302535.92359/1‑94 (MQ=60)
TGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGT < SRR4302535.3123002/94‑1 (MQ=60)
TGTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGG > SRR4302535.3672647/1‑94 (MQ=60)
GTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTG > SRR4302535.111806/1‑94 (MQ=60)
GTCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTG < SRR4302535.2833182/94‑1 (MQ=60)
TCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGCTCGGTTTCGCGGACGGTGGCGATCACATACCAGTGACGAGTGT > SRR4302535.2291307/1‑94 (MQ=60)
TCACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGT < SRR4302535.4517803/94‑1 (MQ=60)
CACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTC < SRR4302535.2350297/94‑1 (MQ=60)
CACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTC > SRR4302535.3841306/1‑94 (MQ=60)
ACTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCG < SRR4302535.3267894/94‑1 (MQ=60)
CTCATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGA > SRR4302535.1563672/1‑94 (MQ=60)
CATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATT > SRR4302535.2927936/1‑94 (MQ=60)
CATCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATT > SRR4302535.369536/1‑94 (MQ=60)
TCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAG < SRR4302535.2050384/94‑1 (MQ=60)
TCAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAG < SRR4302535.4224656/94‑1 (MQ=60)
CAGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGG > SRR4302535.3242028/1‑94 (MQ=60)
AGGCGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGG < SRR4302535.3798769/94‑1 (MQ=60)
CGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAA < SRR4302535.1239919/94‑1 (MQ=60)
CGAATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAA > SRR4302535.1319502/1‑94 (MQ=60)
AATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAA < SRR4302535.1005609/94‑1 (MQ=60)
AATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAA > SRR4302535.4127405/1‑94 (MQ=60)
ATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGTGTAAAAA > SRR4302535.259371/1‑94 (MQ=60)
ATCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAA > SRR4302535.2418675/1‑94 (MQ=60)
TCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAAT < SRR4302535.3861843/94‑1 (MQ=60)
TCGTTGCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAAT < SRR4302535.3590141/94‑1 (MQ=60)
GCGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGC < SRR4302535.2825513/94‑1 (MQ=60)
CGGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCG < SRR4302535.680501/94‑1 (MQ=60)
GGGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGC < SRR4302535.435232/94‑1 (MQ=60)
GGTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCA > SRR4302535.214037/1‑94 (MQ=60)
GTGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCAT > SRR4302535.3362000/1‑94 (MQ=60)
TGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCATG < SRR4302535.4716497/94‑1 (MQ=60)
TGTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCATG > SRR4302535.3755606/1‑94 (MQ=60)
GTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCATGG < SRR4302535.3525388/94‑1 (MQ=60)
GTGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCATGG > SRR4302535.1796574/1‑94 (MQ=60)
TGCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCATGGC > SRR4302535.2273742/1‑94 (MQ=60)
GCCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCATGGCA < SRR4302535.1512086/94‑1 (MQ=60)
|
GCCGTCATCCGGTAGCACGCCGTAGCCAATCGAATCCACTTTACCCTCGAAGGTTTTGCCGCTGTCACTCATCAGGCGAATCGTTGCGGGTGTACCTGAGCGAATATTTTTCAGATCGGTTTCGCGGAAGTTGGCGATCACATACCAGTGACGAGTGTCGATTAGGGTAAAAATAGGGCGCATGGCA > NC_000913/4300810‑4300996
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
