Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,307,603 T→C E319E (GAA→GAG)  yjcW ← putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,307,6030TC100.0% 587.1 / NA 188E319E (GAA→GAG) yjcWputative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (93/95);  total (93/95)

Only 100 of 202 total aligned reads displayed.

TCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATTTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTC  >  NC_000913/4307514‑4307692
                                                                                         |                                                                                         
tCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATctct                                                                                        >  2:1091361/1‑93 (MQ=255)
 cccGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATATTTGCCATTAAGACGGAtctctc                                                                                       <  1:3416394/93‑1 (MQ=255)
  ccGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTcc                                                                                      >  2:2345222/1‑93 (MQ=255)
     gcggcTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGcc                                                                                   >  1:2861064/1‑93 (MQ=255)
        gcTTTCAGTGATGTAAGCCATCCCTTTTTTTACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAgc                                                                                >  1:88485/1‑93 (MQ=255)
        gcTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTCGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAgc                                                                                <  2:3827467/93‑1 (MQ=255)
          tttCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAgcgc                                                                              >  1:1825343/1‑93 (MQ=255)
          tttCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAgcgc                                                                              >  1:3860908/1‑93 (MQ=255)
          tttCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAgcgc                                                                              >  2:495582/1‑93 (MQ=255)
              aGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGttt                                                                          <  1:2722897/93‑1 (MQ=255)
               atGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTa                                                                         <  2:3928759/92‑1 (MQ=255)
                tGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTAt                                                                        <  2:3329382/93‑1 (MQ=255)
                 gATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATc                                                                       >  1:955748/1‑93 (MQ=255)
                  aTGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTAGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATcc                                                                      >  1:3303293/1‑93 (MQ=255)
                   tGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCa                                                                     >  1:4005854/1‑93 (MQ=255)
                   tGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCa                                                                     >  2:4179929/1‑93 (MQ=255)
                   tGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCa                                                                     >  1:1310345/1‑93 (MQ=255)
                           aTCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAAc                                                             >  1:1599410/1‑93 (MQ=255)
                           aTCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAAc                                                             <  2:1897793/93‑1 (MQ=255)
                            tgccTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACa                                                            >  2:2446330/3‑93 (MQ=255)
                            tCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACa                                                            <  1:3565423/93‑1 (MQ=255)
                            tCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACa                                                            <  1:626071/93‑1 (MQ=255)
                            tCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACa                                                            <  1:3805888/93‑1 (MQ=255)
                            tCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACa                                                            <  2:420925/93‑1 (MQ=255)
                             cccTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAg                                                           <  1:1736531/93‑1 (MQ=255)
                             cccTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAg                                                           >  2:4055218/1‑93 (MQ=255)
                               cTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGAc                                                         <  1:4643460/93‑1 (MQ=255)
                               cTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGAc                                                         <  1:4211455/93‑1 (MQ=255)
                               cTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGAc                                                         >  2:701886/1‑93 (MQ=255)
                                ttttttCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACa                                                        >  1:1922397/1‑93 (MQ=255)
                                 tttttCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACaa                                                       >  1:2121339/1‑93 (MQ=255)
                                  ttttCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAAt                                                      <  2:1604698/93‑1 (MQ=255)
                                   tttCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAAtt                                                     <  1:4139292/93‑1 (MQ=255)
                                     tCACGGCATCGAGGGGTGAACGTGGAGAGATATCTTTGCCGTTAAGACGGAGCTCTCCGCCAGCGCTTTTATCCACGCGAAACAGACAATtca                                                   <  2:774635/93‑1 (MQ=255)
                                     tCACGGCATCCAGGGGTGAACGTGTAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtca                                                   <  1:4364398/93‑1 (MQ=255)
                                     tCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtca                                                   <  2:1229289/93‑1 (MQ=255)
                                     tCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtca                                                   <  1:2443639/93‑1 (MQ=255)
                                      cACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtcat                                                  <  2:3399930/93‑1 (MQ=255)
                                      cACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtcat                                                  <  2:3746855/93‑1 (MQ=255)
                                       aCGGCATCCAGGGGTGAACGTGGAGAGATTTCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtcatc                                                 <  1:3141206/93‑1 (MQ=255)
                                       aCGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtcatc                                                 <  2:2609043/93‑1 (MQ=255)
                                       aCGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtcatc                                                 >  1:3919180/1‑93 (MQ=255)
                                       aCGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtcatc                                                 <  2:1561162/93‑1 (MQ=255)
                                        cGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATtcatca                                                <  2:1862538/93‑1 (MQ=255)
                                           cATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAtcagtt                                             >  1:3332890/1‑93 (MQ=255)
                                             tCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGGCGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAtcagttca                                           >  1:3232512/1‑93 (MQ=255)
                                             tCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAtcagttca                                           >  1:1236952/1‑93 (MQ=255)
                                             tCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAtcagttca                                           <  1:2207362/93‑1 (MQ=255)
                                             tCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAtcagttca                                           >  2:1366430/1‑93 (MQ=255)
                                              ccAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAtcagttcag                                          <  2:4370669/93‑1 (MQ=255)
                                               cAGGGGTGAACGTGGAGATATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAtcagttcagt                                         <  1:2042218/93‑1 (MQ=255)
                                                aGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTa                                        <  1:3241912/93‑1 (MQ=255)
                                                aGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTa                                        <  1:724931/93‑1 (MQ=255)
                                                aGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTa                                        <  2:2046814/93‑1 (MQ=255)
                                                 ggggTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTAc                                       >  2:675856/1‑93 (MQ=255)
                                                 ggggTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTAc                                       >  1:4665009/1‑93 (MQ=255)
                                                 ggggTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTAc                                       <  2:4670121/93‑1 (MQ=255)
                                                    gTGAACGTGGAGAGATATTTTTGCCATTAGGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAACTCATCAGTTCAGTACGTc                                    <  1:1952489/93‑1 (MQ=255)
                                                     taaaCGTGGAGAGATTTCTTTGCCATCAAGACGGAGCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTTCGTcc                                   <  2:3885236/91‑1 (MQ=255)
                                                       aaCGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCgg                                 >  2:2189185/1‑93 (MQ=255)
                                                        aCGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGa                                >  1:2954295/1‑93 (MQ=255)
                                                        aCGGGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGa                                <  2:3658449/93‑1 (MQ=255)
                                                         cGTGGAGAGATATCTTTGCCATTCAGACGGATCTCTCCGACAACTCGGTTATCCACGACACACAGACCATTGATTAGATACGTACGTCCGGac                               >  1:4050664/1‑92 (MQ=255)
                                                         cGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGaa                               >  1:1844840/1‑93 (MQ=255)
                                                          gTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAAc                              >  1:1181969/1‑93 (MQ=255)
                                                          gTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAAc                              <  1:694057/93‑1 (MQ=255)
                                                          gTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAAc                              >  1:4097652/1‑93 (MQ=255)
                                                          gTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAAc                              <  2:4265390/93‑1 (MQ=255)
                                                            ggAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCg                            >  1:3350611/1‑93 (MQ=255)
                                                               gagaTATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGAcc                         >  1:3499211/1‑93 (MQ=255)
                                                                 gaTATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAg                       >  2:1011366/1‑93 (MQ=255)
                                                                 gaTATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAg                       >  1:469743/1‑93 (MQ=255)
                                                                  atatCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGt                      >  1:4061990/1‑93 (MQ=255)
                                                                   tatCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTc                     <  2:447210/93‑1 (MQ=255)
                                                                   tatCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTc                     <  2:151119/93‑1 (MQ=255)
                                                                     tCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCGGTTCAGTACGTCCGGAACCGACCAGTCCg                   >  2:627688/1‑93 (MQ=255)
                                                                     tCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCg                   >  1:3463148/1‑93 (MQ=255)
                                                                     tCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCg                   >  2:2698038/1‑93 (MQ=255)
                                                                      cTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCgg                  >  2:4644273/1‑93 (MQ=255)
                                                                      cTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCgg                  >  1:2280943/1‑93 (MQ=255)
                                                                       tttGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGc                 >  1:1533154/1‑93 (MQ=255)
                                                                         tGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCaa               >  2:3369160/1‑93 (MQ=255)
                                                                         tGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCaa               >  1:246019/1‑93 (MQ=255)
                                                                          gCCATTAAGACGGATCTCCCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCaaa              <  1:3253401/93‑1 (MQ=255)
                                                                           ccATTAAGACGGATCGCTCCGCCAGCGCGTTTATCCACGCCAAGCAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAg             <  1:1024745/93‑1 (MQ=255)
                                                                            cATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGc            <  1:1468696/93‑1 (MQ=255)
                                                                            cATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGc            <  1:3704618/93‑1 (MQ=255)
                                                                            cATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGc            >  2:4502144/1‑93 (MQ=255)
                                                                                 aGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAat       <  2:2525450/93‑1 (MQ=255)
                                                                                 aGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAat       <  2:1658561/93‑1 (MQ=255)
                                                                                  gACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAata      <  1:1367600/93‑1 (MQ=255)
                                                                                  gACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAata      <  2:2858606/93‑1 (MQ=255)
                                                                                   aCGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAatat     <  2:1733666/93‑1 (MQ=255)
                                                                                    cGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATAtt    >  2:3060033/1‑93 (MQ=255)
                                                                                    cGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATAtt    >  2:2742424/1‑93 (MQ=255)
                                                                                     ggATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATAttt   <  2:2513642/93‑1 (MQ=255)
                                                                                     ggATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATAttt   <  1:258964/93‑1 (MQ=255)
                                                                                     ggATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATAttt   >  1:164498/1‑93 (MQ=255)
                                                                                      gATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTtc  >  1:1097616/1‑93 (MQ=255)
                                                                                      gATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTtc  <  2:2888715/93‑1 (MQ=255)
                                                                                         |                                                                                         
TCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATTTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTC  >  NC_000913/4307514‑4307692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTATCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATTTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTCTCCC  >  NC_000913/4307510‑4307696
                                                                                             |                                                                                             
GTTATCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATC                                                                                               >  SRR4302535.3734300/1‑94 (MQ=60)
 TTATCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCT                                                                                              <  SRR4302535.2367269/94‑1 (MQ=60)
 TTATCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCT                                                                                              <  SRR4302535.130772/94‑1 (MQ=60)
 TTATCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCT                                                                                              >  SRR4302535.3368008/1‑94 (MQ=60)
   ATCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCT                                                                                            >  SRR4302535.4148142/1‑94 (MQ=60)
     CCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCC                                                                                          <  SRR4302535.2281694/94‑1 (MQ=60)
     CCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCC                                                                                          >  SRR4302535.4104566/1‑94 (MQ=60)
     CCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATATTTGCCATTAAGACGGATCTCTCC                                                                                          <  SRR4302535.3440162/94‑1 (MQ=60)
        GGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCC                                                                                       >  SRR4302535.2881332/1‑94 (MQ=60)
        GGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCC                                                                                       >  SRR4302535.4047347/1‑94 (MQ=60)
           GGCTTTCAGTGATGTAAGCCATCCCTTTTTTTACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGC                                                                                    >  SRR4302535.89109/1‑94 (MQ=60)
             CTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGC                                                                                  >  SRR4302535.2201982/1‑94 (MQ=60)
             CTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGC                                                                                  >  SRR4302535.1838520/1‑94 (MQ=60)
             CTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGC                                                                                  >  SRR4302535.3887475/1‑94 (MQ=60)
              TTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCG                                                                                 <  SRR4302535.2016816/94‑1 (MQ=60)
               TTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGT                                                                                >  SRR4302535.3877638/1‑94 (MQ=60)
               TTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGT                                                                                <  SRR4302535.4082335/94‑1 (MQ=60)
                  AGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTA                                                                             <  SRR4302535.2742348/94‑1 (MQ=60)
                   GTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCGGCGCGTTTAT                                                                            <  SRR4302535.724888/94‑1 (MQ=60)
                    TGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATC                                                                           >  SRR4302535.2741018/1‑94 (MQ=60)
                    TGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATC                                                                           >  SRR4302535.962525/1‑94 (MQ=60)
                     GATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTAGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCC                                                                          >  SRR4302535.3326264/1‑94 (MQ=60)
                      ATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCA                                                                         >  SRR4302535.4033257/1‑94 (MQ=60)
                      ATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCA                                                                         >  SRR4302535.1319710/1‑94 (MQ=60)
                       TGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCAC                                                                        <  SRR4302535.3312449/94‑1 (MQ=60)
                        GTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACG                                                                       >  SRR4302535.4301951/1‑94 (MQ=60)
                           AGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCA                                                                    <  SRR4302535.1929827/94‑1 (MQ=60)
                           AGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCA                                                                    <  SRR4302535.1032750/94‑1 (MQ=60)
                             CCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAA                                                                  >  SRR4302535.3269133/1‑94 (MQ=60)
                             CCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAA                                                                  <  SRR4302535.1948726/94‑1 (MQ=60)
                              CATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAAC                                                                 >  SRR4302535.1610945/1‑94 (MQ=60)
                                TCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAG                                                               <  SRR4302535.3832126/94‑1 (MQ=60)
                                TCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAG                                                               <  SRR4302535.630425/94‑1 (MQ=60)
                                TCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAG                                                               <  SRR4302535.3590146/94‑1 (MQ=60)
                                TCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAG                                                               <  SRR4302535.2382898/94‑1 (MQ=60)
                                 CCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGA                                                              <  SRR4302535.1749083/94‑1 (MQ=60)
                                 CCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGA                                                              >  SRR4302535.1170507/1‑94 (MQ=60)
                                   CTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACA                                                            >  SRR4302535.319347/1‑94 (MQ=60)
                                   CTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACA                                                            <  SRR4302535.4674932/94‑1 (MQ=60)
                                   CTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACA                                                            >  SRR4302535.1772100/1‑94 (MQ=60)
                                   CTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACA                                                            <  SRR4302535.4240280/94‑1 (MQ=60)
                                   CTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACA                                                            >  SRR4302535.1936254/1‑94 (MQ=60)
                                    TTTTTTCACGGCATCCAGGGGTGAACGTGGAGATATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAA                                                           <  SRR4302535.1612670/94‑1 (MQ=60)
                                    TTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAA                                                           >  SRR4302535.2136636/1‑94 (MQ=60)
                                     TTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAAT                                                          >  SRR4302535.667821/1‑94 (MQ=60)
                                      TTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATT                                                         <  SRR4302535.2085825/94‑1 (MQ=60)
                                       TTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTC                                                        <  SRR4302535.4167638/94‑1 (MQ=60)
                                         TCACGGCATCCAGGGGTGAACGTGTAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAT                                                      <  SRR4302535.4394267/94‑1 (MQ=60)
                                         TCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAT                                                      <  SRR4302535.2461247/94‑1 (MQ=60)
                                         TCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCAT                                                      <  SRR4302535.904441/94‑1 (MQ=60)
                                          CACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATC                                                     >  SRR4302535.3945984/1‑94 (MQ=60)
                                          CACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATC                                                     <  SRR4302535.3891718/94‑1 (MQ=60)
                                           ACGGCATCCAGGGGTGAACGTGGAGAGATTTCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCA                                                    <  SRR4302535.3163063/94‑1 (MQ=60)
                                            CGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAG                                                   <  SRR4302535.1607501/94‑1 (MQ=60)
                                              GCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTT                                                 >  SRR4302535.3356088/1‑94 (MQ=60)
                                               CATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTC                                                <  SRR4302535.1209424/94‑1 (MQ=60)
                                                ATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGGCGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCA                                               >  SRR4302535.3254927/1‑94 (MQ=60)
                                                ATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCA                                               >  SRR4302535.1483506/1‑94 (MQ=60)
                                                ATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCA                                               >  SRR4302535.2546832/1‑94 (MQ=60)
                                                ATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCA                                               >  SRR4302535.1245786/1‑94 (MQ=60)
                                                 TCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAG                                              <  SRR4302535.2223084/94‑1 (MQ=60)
                                                  CCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGT                                             >  SRR4302535.135474/1‑94 (MQ=60)
                                                   CAGGGGTGAACGTGGAGATATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTA                                            <  SRR4302535.2056930/94‑1 (MQ=60)
                                                    AGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTAC                                           <  SRR4302535.730016/94‑1 (MQ=60)
                                                    AGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTAC                                           >  SRR4302535.3794503/1‑94 (MQ=60)
                                                    AGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTAC                                           >  SRR4302535.4696547/1‑94 (MQ=60)
                                                    AGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTAC                                           <  SRR4302535.3264429/94‑1 (MQ=60)
                                                    AGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTAC                                           >  SRR4302535.1733450/1‑94 (MQ=60)
                                                        GTGAACGTGGAGAGATATTTTTGCCATTAGGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAACTCATCAGTTCAGTACGTCC                                       <  SRR4302535.1966543/94‑1 (MQ=60)
                                                        GTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCC                                       <  SRR4302535.3368862/94‑1 (MQ=60)
                                                           AACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGA                                    >  SRR4302535.2975047/1‑94 (MQ=60)
                                                            ACGTGGAGAGATATCTTTGCCATTCAGACGGATCTCTCCGacaactcggttatccacgacacacagaccattgattagatacgtacgtccggac                                   >  SRR4302535.4078394/1‑40 (MQ=54)
                                                            ACGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAA                                   >  SRR4302535.1858140/1‑94 (MQ=60)
                                                             CGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAAC                                  >  SRR4302535.1190410/1‑94 (MQ=60)
                                                             CGTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAAC                                  >  SRR4302535.4125699/1‑94 (MQ=60)
                                                              GTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACC                                 <  SRR4302535.698927/94‑1 (MQ=60)
                                                              GTGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACC                                 <  SRR4302535.1845003/94‑1 (MQ=60)
                                                               TGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCG                                >  SRR4302535.3373952/1‑94 (MQ=60)
                                                               TGGAGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCG                                <  SRR4302535.3056216/94‑1 (MQ=60)
                                                                  AGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACC                             >  SRR4302535.3523538/1‑94 (MQ=60)
                                                                  AGAGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACC                             >  SRR4302535.3503363/1‑94 (MQ=60)
                                                                    AGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAG                           <  SRR4302535.3552664/94‑1 (MQ=60)
                                                                    AGATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAG                           >  SRR4302535.473028/1‑94 (MQ=60)
                                                                     GATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGT                          >  SRR4302535.3259794/1‑94 (MQ=60)
                                                                     GATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGT                          <  SRR4302535.1394804/94‑1 (MQ=60)
                                                                     GATATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGT                          >  SRR4302535.4089792/1‑94 (MQ=60)
                                                                       TATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCC                        <  SRR4302535.4712243/94‑1 (MQ=60)
                                                                        ATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCG                       >  SRR4302535.982620/1‑94 (MQ=60)
                                                                        ATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCG                       <  SRR4302535.876579/94‑1 (MQ=60)
                                                                        ATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCG                       <  SRR4302535.4605810/94‑1 (MQ=60)
                                                                        ATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCG                       >  SRR4302535.3487219/1‑94 (MQ=60)
                                                                        ATCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCG                       <  SRR4302535.3340814/94‑1 (MQ=60)
                                                                         TCTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGG                      >  SRR4302535.2297237/1‑94 (MQ=60)
                                                                          CTTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGC                     >  SRR4302535.1544201/1‑94 (MQ=60)
                                                                           TTTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCA                    >  SRR4302535.4194399/1‑94 (MQ=60)
                                                                            TTGCCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAA                   >  SRR4302535.247706/1‑94 (MQ=60)
                                                                              TCCATTAACACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAG                 <  SRR4302535.1282816/94‑1 (MQ=60)
                                                                              GCCATTAAGACGGATCTCCCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAG                 <  SRR4302535.3276004/94‑1 (MQ=60)
                                                                               CCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGC                >  SRR4302535.3457711/1‑94 (MQ=60)
                                                                               CCATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGC                >  SRR4302535.582983/1‑94 (MQ=60)
                                                                               CCATTAAGACGGATCGCTCCGCCAGCGCGTTTATCCACGCCAAGCAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGC                <  SRR4302535.1032024/94‑1 (MQ=60)
                                                                                CATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCC               <  SRR4302535.3730275/94‑1 (MQ=60)
                                                                                CATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCC               >  SRR4302535.3648073/1‑94 (MQ=60)
                                                                                CATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCC               <  SRR4302535.1479218/94‑1 (MQ=60)
                                                                                CATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCC               >  SRR4302535.4001442/1‑94 (MQ=60)
                                                                                 ATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCT              >  SRR4302535.4678561/1‑94 (MQ=60)
                                                                                 ATTAAGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCT              >  SRR4302535.579279/1‑94 (MQ=60)
                                                                                     AGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATA          >  SRR4302535.2827232/1‑94 (MQ=60)
                                                                                     AGACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATA          <  SRR4302535.2474285/94‑1 (MQ=60)
                                                                                      GACGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATAT         <  SRR4302535.1377375/94‑1 (MQ=60)
                                                                                        CGGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTT       >  SRR4302535.165647/1‑94 (MQ=60)
                                                                                         GGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTC      <  SRR4302535.2939762/94‑1 (MQ=60)
                                                                                         GGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTC      <  SRR4302535.260755/94‑1 (MQ=60)
                                                                                         GGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTC      >  SRR4302535.34275/1‑94 (MQ=60)
                                                                                         GGATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTC      >  SRR4302535.1105428/1‑94 (MQ=60)
                                                                                           ATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTCTC    >  SRR4302535.3110451/1‑94 (MQ=60)
                                                                                           ATCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTCTC    >  SRR4302535.2433911/1‑94 (MQ=60)
                                                                                            TCTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTCTCC   <  SRR4302535.3196890/94‑1 (MQ=60)
                                                                                             CTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTCTCCC  >  SRR4302535.4393406/1‑94 (MQ=60)
                                                                                             CTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTCTCCC  <  SRR4302535.360040/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTTATCCCGGCGGCTTTCAGTGATGTAAGCCATCCCTTTTTTCACGGCATCCAGGGGTGAACGTGGAGAGATATCTTTGCCATTAAGACGGATTTCTCCGCCAGCGCGTTTATCCACGCCAAACAGACAATTCATCAGTTCAGTACGTCCGGAACCGACCAGTCCGGCAAAGCCTAATATTTCTCCC  >  NC_000913/4307510‑4307696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑