Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,356,994	C→T	A206T (GCA→ACA)	cadB ←	transport of lysine/cadaverine

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,356,994	0	C	T	100.0%	907.3 / NA	251	A206T (GCA→ACA)	cadB	transport of lysine/cadaverine
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (125/126); total (125/126)

Only 100 of 258 total aligned reads displayed.

TGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAG  >  NC_000913/4356904‑4357083

tGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTgg                                                                                         >  2:1144864/1‑93 (MQ=255)

tGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTgg                                                                                         >  2:3938280/1‑93 (MQ=255)

 gTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGa                                                                                        >  1:3153507/1‑93 (MQ=255)

  tAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGAt                                                                                       <  2:1554341/93‑1 (MQ=255)

  tAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGATTTTAACCATACCAGTACTTACAGCTGTGGAt                                                                                       >  1:1398299/1‑93 (MQ=255)

    aaCAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTc                                                                                     >  2:2129926/1‑93 (MQ=255)

      cAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCaa                                                                                   <  2:3009417/93‑1 (MQ=255)

       aaTACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAac                                                                                  >  1:2149795/1‑93 (MQ=255)

        aTACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAaca                                                                                 >  2:2656921/1‑93 (MQ=255)

         tACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAacac                                                                                >  1:3569406/1‑93 (MQ=255)

          aCCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACAcc                                                                               >  1:3718591/1‑93 (MQ=255)

            cTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCa                                                                             >  2:681967/1‑93 (MQ=255)

              gCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACg                                                                           >  1:4023561/1‑93 (MQ=255)

                tAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGaa                                                                         <  2:2940571/93‑1 (MQ=255)

                tAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGaa                                                                         >  2:4260548/1‑93 (MQ=255)

                tAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGaa                                                                         <  1:2885945/93‑1 (MQ=255)

                tAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGaa                                                                         >  1:3347885/1‑93 (MQ=255)

                tAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGaa                                                                         >  2:121766/1‑93 (MQ=255)

                 aaaCCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAg                                                                        >  2:2356929/1‑93 (MQ=255)

                  aaCCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAgg                                                                       >  2:168678/1‑93 (MQ=255)

                  aaCCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCAAGAAgg                                                                       <  2:309280/93‑1 (MQ=255)

                      aGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCca                                                                   >  1:939204/1‑93 (MQ=255)

                       gTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCcac                                                                  >  1:2234634/1‑93 (MQ=255)

                       gTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCcac                                                                  <  1:2744942/93‑1 (MQ=255)

                       gTACCCAGCATGATTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCcac                                                                  <  1:1945966/93‑1 (MQ=255)

                        tACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCcaca                                                                 <  1:1355258/93‑1 (MQ=255)

                         aCCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAg                                                                <  1:983672/93‑1 (MQ=255)

                           ccAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGa                                                                                        <  1:4314669/67‑1 (MQ=255)

                            cAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgca                                                             >  2:4557194/1‑93 (MQ=255)

                            cAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgca                                                             >  2:1992161/1‑93 (MQ=255)

                             aGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcag                                                            >  2:445135/1‑93 (MQ=255)

                              gCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcaga                                                           <  1:2958459/93‑1 (MQ=255)

                              gCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcaga                                                           >  2:1447233/1‑93 (MQ=255)

                               cATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcagag                                                          >  2:1864531/1‑93 (MQ=255)

                                attgTTGACAGCGGAACGGTACGTTTCGGGTTTTAAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcagagc                                                         <  2:4176666/90‑1 (MQ=255)

                                aTGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcagagc                                                         >  1:1598681/1‑93 (MQ=255)

                                aTGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcagagc                                                         >  1:813970/1‑93 (MQ=255)

                                 tGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcagagca                                                        >  1:1869678/1‑93 (MQ=255)

                                  ggTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGgcagagcag                                                       <  1:2524119/93‑1 (MQ=255)

                                    ttGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGaa                                                     <  1:1240811/93‑1 (MQ=255)

                                    ttGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGaa                                                     <  1:1031260/93‑1 (MQ=255)

                                    ttGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGaa                                                     <  1:4077140/93‑1 (MQ=255)

                                     tGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAAt                                                    <  1:3761702/93‑1 (MQ=255)

                                      gCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATa                                                   >  2:2766992/1‑93 (MQ=255)

                                      gCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATa                                                   <  1:1991534/93‑1 (MQ=255)

                                      gCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATa                                                   >  1:4004908/1‑93 (MQ=255)

                                        cAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACt                                                 <  2:3378754/93‑1 (MQ=255)

                                         aGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACtt                                                <  1:3545141/93‑1 (MQ=255)

                                           cGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTTGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACtttt                                              <  2:1192640/93‑1 (MQ=255)

                                            ggAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTa                                             <  2:189591/93‑1 (MQ=255)

                                            ggAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTa                                             <  1:3495561/93‑1 (MQ=255)

                                            ggAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTa                                             >  1:1277671/1‑93 (MQ=255)

                                             gAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTaa                                            >  2:1961587/1‑93 (MQ=255)

                                             gAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTaa                                            <  1:1213221/93‑1 (MQ=255)

                                             gAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTaa                                            >  1:1564273/1‑93 (MQ=255)

                                              aaCGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAAt                                           >  2:3498329/1‑93 (MQ=255)

                                                cGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGa                                         <  1:257025/93‑1 (MQ=255)

                                                  gTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATc                                       <  1:853682/93‑1 (MQ=255)

                                                  gTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATc                                       <  2:1923991/93‑1 (MQ=255)

                                                     cGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCa                                    <  2:3589619/93‑1 (MQ=255)

                                                     cGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCa                                    <  1:310355/93‑1 (MQ=255)

                                                      gTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCAt                                   >  2:4643365/1‑93 (MQ=255)

                                                         tctggTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGAc                                <  2:1666660/90‑1 (MQ=255)

                                                         tCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGAc                                <  2:2297658/93‑1 (MQ=255)

                                                            ggTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCAt                             >  2:4318365/1‑93 (MQ=255)

                                                             gTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATc                            >  1:2480593/1‑93 (MQ=255)

                                                             gTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATc                            >  2:547805/1‑93 (MQ=255)

                                                              tttttAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCa                           >  2:2826482/1‑93 (MQ=255)

                                                              tttttAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCa                           >  1:2103646/1‑93 (MQ=255)

                                                               ttttAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAg                          >  2:1408420/1‑93 (MQ=255)

                                                               ttttAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAg                          <  1:32482/93‑1 (MQ=255)

                                                               ttttAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAg                          >  2:3805773/1‑93 (MQ=255)

                                                               ttttAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAg                          <  1:4355105/93‑1 (MQ=255)

                                                                   aaCCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGt                      <  1:1708458/93‑1 (MQ=255)

                                                                      cATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATc                   >  2:1339632/1‑93 (MQ=255)

                                                                      cATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATc                   >  2:3472598/1‑93 (MQ=255)

                                                                       aTACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATcc                  <  1:691784/93‑1 (MQ=255)

                                                                       aTACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATcc                  <  1:282478/93‑1 (MQ=255)

                                                                        tACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCg                 >  1:1104110/1‑93 (MQ=255)

                                                                        tACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCg                 >  1:2348408/1‑93 (MQ=255)

                                                                        tACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCg                 <  2:3991290/93‑1 (MQ=255)

                                                                         aCCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGc                <  1:770678/93‑1 (MQ=255)

                                                                          ccAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCa               <  2:2372503/93‑1 (MQ=255)

                                                                          ccAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCa               >  1:4593141/1‑93 (MQ=255)

                                                                          ccAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCa               <  1:418873/93‑1 (MQ=255)

                                                                             gTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTa            >  2:3744338/1‑93 (MQ=255)

                                                                             gTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTa            <  1:2727819/93‑1 (MQ=255)

                                                                             gTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTa            >  2:3303865/1‑93 (MQ=255)

                                                                              tACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTAt           >  1:3896323/1‑93 (MQ=255)

                                                                              tACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTAt           <  1:4687333/93‑1 (MQ=255)

                                                                              tACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTAt           <  2:1182205/93‑1 (MQ=255)

                                                                                 ttACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTcc        >  1:4290800/1‑93 (MQ=255)

                                                                                 ttACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTcc        <  1:3923125/93‑1 (MQ=255)

                                                                                 ttACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTcc        >  1:1759917/1‑93 (MQ=255)

                                                                                 tcaCAGCGGTGCATTCAACACTCACGAAGGCCCAGAGGCAGAGCAGAATTCTTATAATGATCGCATGACCAGCAGCGGTATCCGCAGTATTcc        <  2:3246525/91‑1 (MQ=255)

                                                                                   aCAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAg      <  1:3271833/93‑1 (MQ=255)

                                                                                      gCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTa   <  2:3446139/93‑1 (MQ=255)

                                                                                      gCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTa   >  1:3841491/1‑93 (MQ=255)

                                                                                      gCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTa   <  1:3435614/93‑1 (MQ=255)

                                                                                      gCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTa   <  1:57000/93‑1 (MQ=255)

TGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAG  >  NC_000913/4356904‑4357083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAGCT  >  NC_000913/4356901‑4357085

gcATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGT                                                                                             <  SRR4302535.487656/92‑1 (MQ=60)

 GATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTG                                                                                            <  SRR4302535.968583/94‑1 (MQ=60)

  ATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGG                                                                                           >  SRR4302535.3050186/1‑94 (MQ=60)

  ATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGG                                                                                           >  SRR4302535.2819389/1‑94 (MQ=60)

  ATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGG                                                                                           >  SRR4302535.1766284/1‑94 (MQ=60)

   TGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGA                                                                                          >  SRR4302535.3186145/1‑94 (MQ=60)

   TGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGA                                                                                          >  SRR4302535.3175416/1‑94 (MQ=60)

   TGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGA                                                                                          <  SRR4302535.2026361/94‑1 (MQ=60)

    gacccgctcttccgatctgcgtggtCCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGTGTTTTTAACCATACCAGTACTTACAGCTGTGGAT                                                                                         <  SRR4302535.4344183/69‑1 (MQ=60)

    GTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGATTTTAACCATACCAGTACTTACAGCTGTGGAT                                                                                         >  SRR4302535.1408280/1‑94 (MQ=60)

      AAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTC                                                                                       <  SRR4302535.402086/94‑1 (MQ=60)

         CAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAAC                                                                                    <  SRR4302535.609238/94‑1 (MQ=60)

         CAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAAC                                                                                    >  SRR4302535.2165256/1‑94 (MQ=60)

           ATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACAC                                                                                  >  SRR4302535.1074043/1‑94 (MQ=60)

           ATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACAC                                                                                  >  SRR4302535.3594160/1‑94 (MQ=60)

            TACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACC                                                                                 >  SRR4302535.3744352/1‑94 (MQ=60)

              CCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCA                                                                               >  SRR4302535.3486466/1‑94 (MQ=60)

               CTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCAC                                                                              >  SRR4302535.3791971/1‑94 (MQ=60)

                TGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACG                                                                             <  SRR4302535.4263655/94‑1 (MQ=60)

                TGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACG                                                                             >  SRR4302535.4051090/1‑94 (MQ=60)

                  CTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAA                                                                           >  SRR4302535.161010/1‑94 (MQ=60)

                  CTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAA                                                                           >  SRR4302535.3399631/1‑94 (MQ=60)

                  CTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAA                                                                           >  SRR4302535.3371206/1‑94 (MQ=60)

                   TAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAG                                                                          <  SRR4302535.1987295/94‑1 (MQ=60)

                   TAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAG                                                                          <  SRR4302535.2477998/94‑1 (MQ=60)

                   TAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAG                                                                          <  SRR4302535.2906364/94‑1 (MQ=60)

                     AACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGC                                                                        >  SRR4302535.849542/1‑94 (MQ=60)

                     AACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGC                                                                        >  SRR4302535.4373190/1‑94 (MQ=60)

                       CCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCC                                                                      <  SRR4302535.2287744/94‑1 (MQ=60)

                        CAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCA                                                                     <  SRR4302535.2116274/94‑1 (MQ=60)

                        CAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCA                                                                     >  SRR4302535.945856/1‑94 (MQ=60)

                         AGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCAC                                                                    <  SRR4302535.3584584/94‑1 (MQ=60)

                         AGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCAC                                                                    <  SRR4302535.729541/94‑1 (MQ=60)

                         AGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCAC                                                                    >  SRR4302535.2250530/1‑94 (MQ=60)

                          GTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACA                                                                   <  SRR4302535.2764506/94‑1 (MQ=60)

                          GTACCCAGCATGATTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACA                                                                   <  SRR4302535.1959976/94‑1 (MQ=60)

                           TACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAG                                                                  >  SRR4302535.3134609/1‑94 (MQ=60)

                           TACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAG                                                                  <  SRR4302535.1364954/94‑1 (MQ=60)

                            ACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGG                                                                 <  SRR4302535.990659/94‑1 (MQ=60)

                             CCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGC                                                                >  SRR4302535.3790114/1‑94 (MQ=60)

                              CCAGCTTGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTAAACCATACCAGTGCTTACAGCTGTGGATTCAACACCCACGAAGGCCCCCAGGCA                                                               <  SRR4302535.1760328/94‑1 (MQ=60)

                               CAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAGCCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAG                                                              >  SRR4302535.3363189/1‑94 (MQ=60)

                               CAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAG                                                              >  SRR4302535.3356920/1‑94 (MQ=60)

                               CAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAG                                                              >  SRR4302535.498177/1‑94 (MQ=60)

                                AGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGA                                                             >  SRR4302535.4342710/1‑94 (MQ=60)

                                AGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGA                                                             >  SRR4302535.1190151/1‑94 (MQ=60)

                                AGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGA                                                             >  SRR4302535.4522763/1‑94 (MQ=60)

                                 GCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAG                                                            <  SRR4302535.2979235/94‑1 (MQ=60)

                                  CATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGC                                                           >  SRR4302535.1610211/1‑94 (MQ=60)

                                  CATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGC                                                           >  SRR4302535.819680/1‑94 (MQ=60)

                                  CATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGA                                                           >  SRR4302535.1266704/1‑94 (MQ=60)

                                   ATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCA                                                          >  SRR4302535.1883156/1‑94 (MQ=60)

                                   ATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCA                                                          >  SRR4302535.1259692/1‑94 (MQ=60)

                                   ATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAACGCCCACAGGCAGAGCA                                                          >  SRR4302535.2769262/1‑94 (MQ=60)

                                     GGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGA                                                        <  SRR4302535.474714/94‑1 (MQ=60)

                                     GGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGA                                                        <  SRR4302535.2542307/94‑1 (MQ=60)

                                      GTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAA                                                       <  SRR4302535.4248233/94‑1 (MQ=60)

                                       TTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAAT                                                      <  SRR4302535.1249671/94‑1 (MQ=60)

                                       TTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAAT                                                      <  SRR4302535.4105038/94‑1 (MQ=60)

                                       TTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAAT                                                      <  SRR4302535.1038584/94‑1 (MQ=60)

                                       GTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAAT                                                      <  SRR4302535.3476873/94‑1 (MQ=60)

                                        TGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATA                                                     >  SRR4302535.4032303/1‑94 (MQ=60)

                                        TGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATA                                                     <  SRR4302535.3787696/94‑1 (MQ=60)

                                         GCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATAC                                                    <  SRR4302535.2005872/94‑1 (MQ=60)

                                         GCCAGCAGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATAC                                                    <  SRR4302535.2506693/94‑1 (MQ=60)

                                          CCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACT                                                   <  SRR4302535.1177033/94‑1 (MQ=60)

                                            AGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTT                                                 <  SRR4302535.3569759/94‑1 (MQ=60)

                                            AGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTT                                                 >  SRR4302535.4418169/1‑94 (MQ=60)

                                             GCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTT                                                <  SRR4302535.1233735/94‑1 (MQ=60)

                                              CGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTA                                               >  SRR4302535.1286796/1‑94 (MQ=60)

                                               GGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAA                                              >  SRR4302535.1685228/1‑94 (MQ=60)

                                               GGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAA                                              >  SRR4302535.988618/1‑94 (MQ=60)

                                               GGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAA                                              <  SRR4302535.3729228/94‑1 (MQ=60)

                                               GGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAA                                              <  SRR4302535.3519848/94‑1 (MQ=60)

                                               GGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAA                                              >  SRR4302535.1575565/1‑94 (MQ=60)

                                                GAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAAT                                             <  SRR4302535.1221924/94‑1 (MQ=60)

                                                 AACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATG                                            >  SRR4302535.3034249/1‑94 (MQ=60)

                                                 AACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATG                                            <  SRR4302535.4198893/94‑1 (MQ=60)

                                                   CGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGAT                                          <  SRR4302535.258798/94‑1 (MQ=60)

                                                     GTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCG                                        <  SRR4302535.3746837/94‑1 (MQ=60)

                                                     GTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCG                                        >  SRR4302535.2555858/1‑94 (MQ=60)

                                                     GTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCG                                        <  SRR4302535.859695/94‑1 (MQ=60)

                                                     GTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCG                                        <  SRR4302535.352375/94‑1 (MQ=60)

                                                       ACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCA                                      <  SRR4302535.3883527/94‑1 (MQ=60)

                                                       ACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCA                                      <  SRR4302535.466775/94‑1 (MQ=60)

                                                        CGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCAT                                     <  SRR4302535.312508/94‑1 (MQ=60)

                                                        CGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCAT                                     >  SRR4302535.1455326/1‑94 (MQ=60)

                                                        CGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCAT                                     >  SRR4302535.3285651/1‑94 (MQ=60)

                                                         GTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATG                                    <  SRR4302535.4327171/94‑1 (MQ=60)

                                                         GTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATG                                    >  SRR4302535.3644242/1‑94 (MQ=60)

                                                          TTTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGA                                   <  SRR4302535.3884498/94‑1 (MQ=60)

                                                           TTCGGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGAC                                  >  SRR4302535.403400/1‑94 (MQ=60)

                                                              GGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCAT                               <  SRR4302535.4092842/94‑1 (MQ=60)

                                                              GGGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCAT                               >  SRR4302535.1965486/1‑94 (MQ=60)

                                                               GGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATC                              >  SRR4302535.267466/1‑94 (MQ=60)

                                                               GGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATC                              >  SRR4302535.2498480/1‑94 (MQ=60)

                                                               GGTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATC                              >  SRR4302535.1400313/1‑94 (MQ=60)

                                                                GTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAANGCCCACAGGCAGAGCAGAATANNNTNAATGATCGCANGNNNANCA                             >  SRR4302535.3505003/1‑94 (MQ=60)

                                                                GTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCA                             >  SRR4302535.2118817/1‑94 (MQ=60)

                                                                GTTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCA                             >  SRR4302535.1288984/1‑94 (MQ=60)

                                                                 TTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAG                            <  SRR4302535.4066143/94‑1 (MQ=60)

                                                                 TTTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAG                            <  SRR4302535.807759/94‑1 (MQ=60)

                                                                  TTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGT                           <  SRR4302535.32732/94‑1 (MQ=60)

                                                                  TTTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGT                           <  SRR4302535.4384916/94‑1 (MQ=60)

                                                                   TTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTG                          <  SRR4302535.818858/94‑1 (MQ=60)

                                                                   TTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTG                          <  SRR4302535.2737761/94‑1 (MQ=60)

                                                                   TTTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTG                          <  SRR4302535.402467/94‑1 (MQ=60)

                                                                    TTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGG                         >  SRR4302535.2132011/1‑94 (MQ=60)

                                                                    TTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGG                         >  SRR4302535.927075/1‑94 (MQ=60)

                                                                    TTAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGG                         <  SRR4302535.896763/94‑1 (MQ=60)

                                                                     TAACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGT                        >  SRR4302535.2167366/1‑94 (MQ=60)

                                                                      AACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTA                       <  SRR4302535.1720810/94‑1 (MQ=60)

                                                                       ACCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTAT                      <  SRR4302535.3559640/94‑1 (MQ=60)

                                                                        CCATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATC                     >  SRR4302535.2388456/1‑94 (MQ=60)

                                                                         CATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCC                    >  SRR4302535.32720/1‑94 (MQ=60)

                                                                          ATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCG                   >  SRR4302535.1111998/1‑94 (MQ=60)

                                                                          ATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCG                   >  SRR4302535.2365244/1‑94 (MQ=60)

                                                                          ATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCG                   <  SRR4302535.696632/94‑1 (MQ=60)

                                                                          ATACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCG                   <  SRR4302535.284448/94‑1 (MQ=60)

                                                                            ACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCA                 >  SRR4302535.4624405/1‑94 (MQ=60)

                                                                            ACCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCA                 <  SRR4302535.776104/94‑1 (MQ=60)

                                                                             CCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAG                <  SRR4302535.2752105/94‑1 (MQ=60)

                                                                             CCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAG                >  SRR4302535.1785041/1‑94 (MQ=60)

                                                                             CCAGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAG                <  SRR4302535.421806/94‑1 (MQ=60)

                                                                               AGTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTA              >  SRR4302535.1956010/1‑94 (MQ=60)

                                                                                GTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTAT             <  SRR4302535.2747299/94‑1 (MQ=60)

                                                                                GTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTAT             <  SRR4302535.2510002/94‑1 (MQ=60)

                                                                                GTACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTAT             >  SRR4302535.3923025/1‑94 (MQ=60)

                                                                                 TACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATT            <  SRR4302535.3939793/94‑1 (MQ=60)

                                                                                 TACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATT            <  SRR4302535.4719156/94‑1 (MQ=60)

                                                                                  ACTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTC           >  SRR4302535.186887/1‑94 (MQ=60)

                                                                                   CTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCC          >  SRR4302535.4320147/1‑94 (MQ=60)

                                                                                   CTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCC          >  SRR4302535.1772658/1‑94 (MQ=60)

                                                                                   CTTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCC          >  SRR4302535.636549/1‑94 (MQ=60)

                                                                                    TTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCA         <  SRR4302535.3949937/94‑1 (MQ=60)

                                                                                    TTACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCA         <  SRR4302535.2956558/94‑1 (MQ=60)

                                                                                      ACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGT       <  SRR4302535.3294561/94‑1 (MQ=60)

                                                                                      ACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGT       >  SRR4302535.1381139/1‑94 (MQ=60)

                                                                                      ACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGT       <  SRR4302535.2193218/94‑1 (MQ=60)

                                                                                      ACAGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGT       <  SRR4302535.1489278/94‑1 (MQ=60)

                                                                                        AGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTA     >  SRR4302535.1577024/1‑94 (MQ=60)

                                                                                        AGCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTA     >  SRR4302535.3867959/1‑94 (MQ=60)

                                                                                         GCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAG    <  SRR4302535.3459490/94‑1 (MQ=60)

                                                                                         GCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAG    <  SRR4302535.57413/94‑1 (MQ=60)

                                                                                         GCTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAG    <  SRR4302535.2916933/94‑1 (MQ=60)

                                                                                          CTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAGC   >  SRR4302535.4665288/1‑94 (MQ=60)

                                                                                          CTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAGC   >  SRR4302535.1327212/1‑94 (MQ=60)

                                                                                          CTGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAGC   <  SRR4302535.2881779/94‑1 (MQ=60)

                                                                                           TGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAGCT  >  SRR4302535.1335653/1‑94 (MQ=60)

                                                                                           TGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAGCT  <  SRR4302535.2916614/94‑1 (MQ=60)

                                                                                           TGTGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAGCC  >  SRR4302535.2968426/1‑94 (MQ=60)

CGATGTAAACAATACCTGCTAAACCAGTACCCAGCATGGTTGCCAGCGGAACGGTACGTTTCGGGTTTTTAACCATACCAGTACTTACAGCTGCGGATTCAACACCCACGAAGGCCCACAGGCAGAGCAGAATACTTTTAATGATCGCATGACCATCAGTGGTATCCGCAGTATTCCAGTTAGCT  >  NC_000913/4356901‑4357085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`