Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,370,182	A→G	N527S (AAC→AGC)	mopA →	GroEL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,370,182	0	A	G	100.0%	669.0 / NA	209	N527S (AAC→AGC)	mopA	GroEL
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (93/116); total (93/116)

Only 100 of 222 total aligned reads displayed.

CCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAT  >  NC_000913/4370092‑4370271

ccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCg                                                                                         >  2:4551204/1‑93 (MQ=255)

 caaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGa                                                                                        >  2:608431/1‑93 (MQ=255)

   aaGTACCTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATg                                                                                      <  2:1839237/93‑1 (MQ=255)

   aaGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCAACACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATg                                                                                      >  2:3543884/1‑93 (MQ=255)

      tAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAg                                                                                   <  2:298874/93‑1 (MQ=255)

      tAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAg                                                                                   >  1:3581851/1‑93 (MQ=255)

        aCTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCt                                                                                 >  1:124893/1‑93 (MQ=255)

         cTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTg                                                                                <  1:1150331/93‑1 (MQ=255)

          tCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGa                                                                               >  2:1997011/1‑93 (MQ=255)

          tCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGa                                                                               >  1:4328352/1‑93 (MQ=255)

          tCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGa                                                                               >  1:322908/1‑93 (MQ=255)

           cGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGAc                                                                              <  1:2781424/93‑1 (MQ=255)

            gTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACt                                                                             >  2:2527275/1‑93 (MQ=255)

            gTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACt                                                                             >  2:3142098/1‑93 (MQ=255)

            gTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACt                                                                             >  2:477094/1‑93 (MQ=255)

             ttCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACtt                                                                            >  1:2673047/1‑93 (MQ=255)

              tctgctctgcAGTGCGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTa                                                                           <  2:2467586/93‑1 (MQ=255)

              tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTa                                                                           <  2:3678428/93‑1 (MQ=255)

              tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTa                                                                           >  1:3167007/1‑93 (MQ=255)

               ctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAg                                                                          <  1:140296/93‑1 (MQ=255)

               ctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAg                                                                          <  2:3061820/93‑1 (MQ=255)

               ctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAg                                                                          <  1:1922208/93‑1 (MQ=255)

                tgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAgg                                                                         <  2:2330696/93‑1 (MQ=255)

                   tctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGgcgc                                                                      >  1:3640629/1‑93 (MQ=255)

                   tctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGgcgc                                                                      <  1:1297135/93‑1 (MQ=255)

                   tctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGgcgc                                                                      >  1:2956158/1‑93 (MQ=255)

                     tgcAGTACGCAGCTTCTATGGCTGGCCTGATTATCACCACCGAATGCCTGGTTACCGACCTGCCGAAAAGCGATGCAGCTGGCTTACGCgctg                                                                    >  2:1290201/1‑93 (MQ=255)

                      gcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCgctgc                                                                   <  1:83188/93‑1 (MQ=255)

                       cAGTCCGCAGCTGCTGTTGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCgctgct                                                                  <  1:3055719/93‑1 (MQ=255)

                        aGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGctgctg                                                                 <  1:2869067/93‑1 (MQ=255)

                        aGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGctgctg                                                                 >  1:1530060/1‑93 (MQ=255)

                        aGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGctgctg                                                                 >  2:4220879/1‑93 (MQ=255)

                        aGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGctgctg                                                                 >  2:4369524/1‑93 (MQ=255)

                         gTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTgg                                                                <  2:2493065/93‑1 (MQ=255)

                            cGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCgg                                                             <  2:1138180/93‑1 (MQ=255)

                             gCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGt                                                            >  2:1107165/1‑93 (MQ=255)

                             gCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGt                                                            >  1:4126903/1‑93 (MQ=255)

                              cAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTa                                                           <  2:3578559/93‑1 (MQ=255)

                               aGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAt                                                          <  1:2083542/93‑1 (MQ=255)

                               aGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAt                                                          <  1:748740/93‑1 (MQ=255)

                                 cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                        <  2:3368283/93‑1 (MQ=255)

                                 cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                        <  1:707726/93‑1 (MQ=255)

                                 cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                        <  2:4282282/93‑1 (MQ=255)

                                 cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                        <  1:2196333/93‑1 (MQ=255)

                                  ttCTGTGGCTGGCCTGATGATCACCCCCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATggg                                                       <  2:389446/93‑1 (MQ=255)

                                  ttCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATggg                                                       >  1:3280429/1‑93 (MQ=255)

                                   tCTGTGGCTGGCCTGATGATGACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggc                                                      <  2:1483221/93‑1 (MQ=255)

                                     tgtgGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcgg                                                    <  2:2764131/93‑1 (MQ=255)

                                      gtgGCTGGGCTGGTGATCACAACCGAATGCATGGGTAACGACCTGCTGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcggc                                                   >  2:3817671/1‑93 (MQ=255)

                                       tggctggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCa                                                  >  2:3562755/1‑93 (MQ=255)

                                        ggctggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCAt                                                 <  2:644089/93‑1 (MQ=255)

                                        ggctggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCAt                                                 <  2:1242023/93‑1 (MQ=255)

                                           tggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATggg                                              <  2:3449421/93‑1 (MQ=255)

                                            ggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGt                                             >  2:3273374/1‑93 (MQ=255)

                                            ggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGt                                             <  1:585096/93‑1 (MQ=255)

                                             gcCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTg                                            >  2:2048393/1‑93 (MQ=255)

                                              ccTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTgg                                           >  2:2906358/1‑93 (MQ=255)

                                              ccTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTgg                                           >  2:4415842/1‑93 (MQ=255)

                                                 gatgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAt                                        <  1:1829191/93‑1 (MQ=255)

                                                 gatgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCAt                                        <  2:520343/93‑1 (MQ=255)

                                                  atgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATg                                       <  1:421857/93‑1 (MQ=255)

                                                  atgatCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATg                                       >  2:734511/1‑93 (MQ=255)

                                                  atgatCACCACCGAATGCATGCTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATg                                       <  2:2656482/93‑1 (MQ=255)

                                                     atCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggc                                    >  1:1088832/1‑93 (MQ=255)

                                                     atCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggc                                    <  1:1439225/93‑1 (MQ=255)

                                                        accaccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcggc                                 <  1:1543010/93‑1 (MQ=255)

                                                        accaccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcggc                                 <  1:3900007/93‑1 (MQ=255)

                                                         ccaccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCa                                >  2:4671601/1‑93 (MQ=255)

                                                         ccaccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCa                                <  1:227628/93‑1 (MQ=255)

                                                         ccaccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCa                                <  1:3512439/93‑1 (MQ=255)

                                                          caccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCat                               <  1:3945208/93‑1 (MQ=255)

                                                           accGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGGGGCatg                              >  1:992764/1‑93 (MQ=255)

                                                            ccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatga                             <  2:1596722/93‑1 (MQ=255)

                                                            ccGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatga                             <  1:1764249/93‑1 (MQ=255)

                                                               aaTGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGt                          >  2:2240881/1‑93 (MQ=255)

                                                               aaTGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGt                          >  1:1012379/1‑93 (MQ=255)

                                                               aaTGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGt                          <  1:3369408/93‑1 (MQ=255)

                                                                aTGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTa                         >  1:3836927/1‑93 (MQ=255)

                                                                aTGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTa                         <  2:3976441/93‑1 (MQ=255)

                                                                 tGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                        <  2:678534/93‑1 (MQ=255)

                                                                 tGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                        <  2:145069/93‑1 (MQ=255)

                                                                  gCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAt                       <  1:4627203/93‑1 (MQ=255)

                                                                   cATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAtt                      >  2:2160530/1‑93 (MQ=255)

                                                                    aTGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTg                     <  1:174869/93‑1 (MQ=255)

                                                                    aTGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTg                     >  2:1396220/1‑93 (MQ=255)

                                                                    aTGGCTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTg                     >  1:3416459/1‑93 (MQ=255)

                                                                      ggTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGcc                   >  1:646413/1‑93 (MQ=255)

                                                                       gTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGccc                  <  2:1337179/93‑1 (MQ=255)

                                                                           ccGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCa              >  1:3185284/1‑93 (MQ=255)

                                                                           acGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCa              <  1:2568663/92‑1 (MQ=255)

                                                                             gACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCAcc            <  1:2017476/93‑1 (MQ=255)

                                                                              aCCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCt           <  1:439516/93‑1 (MQ=255)

                                                                               ccTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTc          <  1:1444048/93‑1 (MQ=255)

                                                                                   ccGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAg      <  2:1706019/93‑1 (MQ=255)

                                                                                      aaaagCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGaaa   >  2:4640430/1‑93 (MQ=255)

                                                                                      aaaagCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGaaa   <  1:2313892/93‑1 (MQ=255)

                                                                                      aaaagCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGaaa   >  2:3851926/1‑93 (MQ=255)

                                                                                      aaaagCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGaaa   >  1:301617/1‑93 (MQ=255)

                                                                                       aaagCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGaaaa  >  1:2905838/1‑92 (MQ=255)

                                                                                       aaagCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAt  >  1:245934/1‑93 (MQ=255)

CCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAT  >  NC_000913/4370092‑4370271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAA  >  NC_000913/4370089‑4370273

CAACCAAAGTACCTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAG                                                                                             <  SRR4302535.125433/94‑1 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGTCCTGCCGAAAAG                                                                                             >  SRR4302535.3364259/1‑94 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAG                                                                                             <  SRR4302535.592588/94‑1 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAG                                                                                             <  SRR4302535.478932/94‑1 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAG                                                                                             >  SRR4302535.3603366/1‑94 (MQ=60)

 AACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGC                                                                                            >  SRR4302535.1594447/1‑94 (MQ=60)

  ACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCG                                                                                           <  SRR4302535.95271/94‑1 (MQ=60)

   CCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGA                                                                                          >  SRR4302535.629922/1‑94 (MQ=60)

   CCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGA                                                                                          >  SRR4302535.4406154/1‑94 (MQ=60)

    CAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGAT                                                                                         <  SRR4302535.2065691/94‑1 (MQ=60)

     AAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATG                                                                                        >  SRR4302535.3254148/1‑94 (MQ=60)

       AGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCA                                                                                      >  SRR4302535.2282913/1‑94 (MQ=60)

       AGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCA                                                                                      <  SRR4302535.3437991/94‑1 (MQ=60)

       AGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCA                                                                                      <  SRR4302535.1317099/94‑1 (MQ=60)

        GTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCGTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAG                                                                                     <  SRR4302535.2330355/94‑1 (MQ=60)

        GTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAG                                                                                     >  SRR4302535.3606694/1‑94 (MQ=60)

         TAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGC                                                                                    <  SRR4302535.4217695/94‑1 (MQ=60)

          AACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCT                                                                                   <  SRR4302535.145243/94‑1 (MQ=60)

          AACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCT                                                                                   >  SRR4302535.125772/1‑94 (MQ=60)

            CTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGA                                                                                 >  SRR4302535.325140/1‑94 (MQ=60)

            CTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGA                                                                                 >  SRR4302535.4357947/1‑94 (MQ=60)

            CTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGA                                                                                 <  SRR4302535.1158546/94‑1 (MQ=60)

              CGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACT                                                                               <  SRR4302535.2801223/94‑1 (MQ=60)

               GTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTT                                                                              >  SRR4302535.2692171/1‑94 (MQ=60)

               GTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTT                                                                              <  SRR4302535.827415/94‑1 (MQ=60)

                TTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTA                                                                             >  SRR4302535.3188951/1‑94 (MQ=60)

                  CTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGG                                                                           <  SRR4302535.3369868/94‑1 (MQ=60)

                  CTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGG                                                                           <  SRR4302535.141282/94‑1 (MQ=60)

                  CTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGG                                                                           <  SRR4302535.1936064/94‑1 (MQ=60)

                  CTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTCCCGAAAAGCGATGCAGCTGACTTAGG                                                                           >  SRR4302535.3003025/1‑94 (MQ=60)

                   TGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGC                                                                          <  SRR4302535.743857/94‑1 (MQ=60)

                   TGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGC                                                                          <  SRR4302535.2195565/94‑1 (MQ=60)

                    GCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCG                                                                         <  SRR4302535.4219637/94‑1 (MQ=60)

                     CTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGC                                                                        >  SRR4302535.2976921/1‑94 (MQ=60)

                     CTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGC                                                                        >  SRR4302535.3665849/1‑94 (MQ=60)

                      TCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCT                                                                       <  SRR4302535.1306388/94‑1 (MQ=60)

                         GCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCT                                                                    <  SRR4302535.241376/94‑1 (MQ=60)

                         GCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCT                                                                    <  SRR4302535.83776/94‑1 (MQ=60)

                          CAGTCCGCAGCTGCTGTTGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTG                                                                   <  SRR4302535.3077109/94‑1 (MQ=60)

                          CAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTG                                                                   >  SRR4302535.1541083/1‑94 (MQ=60)

                           AGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGG                                                                  >  SRR4302535.2447514/1‑94 (MQ=60)

                           AGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGG                                                                  <  SRR4302535.2889386/94‑1 (MQ=60)

                            GTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGC                                                                 >  SRR4302535.1362793/1‑94 (MQ=60)

                              ACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGG                                                               >  SRR4302535.1155589/1‑94 (MQ=60)

                               CGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGT                                                              >  SRR4302535.4155143/1‑94 (MQ=60)

                                GCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGGA                                                             >  SRR4302535.850280/1‑94 (MQ=60)

                                 CAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAT                                                            <  SRR4302535.2025985/94‑1 (MQ=60)

                                 CAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTAT                                                            <  SRR4302535.2777057/94‑1 (MQ=60)

                                  AGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATG                                                           <  SRR4302535.2098547/94‑1 (MQ=60)

                                  AGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATG                                                           >  SRR4302535.3786341/1‑94 (MQ=60)

                                  AGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATG                                                           >  SRR4302535.4673242/1‑94 (MQ=60)

                                  AGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATG                                                           <  SRR4302535.754006/94‑1 (MQ=60)

                                   GCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGG                                                          >  SRR4302535.4342996/1‑94 (MQ=60)

                                   GCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGG                                                          <  SRR4302535.184562/94‑1 (MQ=60)

                                    CTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGG                                                         <  SRR4302535.2868064/94‑1 (MQ=60)

                                    CTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGG                                                         <  SRR4302535.2211986/94‑1 (MQ=60)

                                    CTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGG                                                         >  SRR4302535.3303214/1‑94 (MQ=60)

                                    CTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGG                                                         <  SRR4302535.712693/94‑1 (MQ=60)

                                     TTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGC                                                        <  SRR4302535.696879/94‑1 (MQ=60)

                                      TCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCG                                                       <  SRR4302535.3941457/94‑1 (MQ=60)

                                            GCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGG                                                 <  SRR4302535.3178014/94‑1 (MQ=60)

                                               GGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTG                                              <  SRR4302535.589198/94‑1 (MQ=60)

                                                 CCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGC                                            >  SRR4302535.1547888/1‑94 (MQ=60)

                                                    GATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATG                                         >  SRR4302535.4603058/1‑94 (MQ=60)

                                                    GATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATG                                         <  SRR4302535.1980770/94‑1 (MQ=60)

                                                    GATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATG                                         <  SRR4302535.1770273/94‑1 (MQ=60)

                                                    GATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATG                                         <  SRR4302535.1842396/94‑1 (MQ=60)

                                                     ATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGG                                        <  SRR4302535.424802/94‑1 (MQ=60)

                                                       GATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGC                                      >  SRR4302535.1096581/1‑94 (MQ=60)

                                                       GATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGGATGGGCGGCATGGGTGGCATGGGG                                      >  SRR4302535.99018/1‑94 (MQ=60)

                                                        ATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCG                                     <  SRR4302535.1449512/94‑1 (MQ=60)

                                                        ATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCG                                     >  SRR4302535.1288465/1‑94 (MQ=60)

                                                           ACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCA                                  <  SRR4302535.1554130/94‑1 (MQ=60)

                                                           ACCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCA                                  <  SRR4302535.3926722/94‑1 (MQ=60)

                                                            CCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCAT                                 <  SRR4302535.229193/94‑1 (MQ=60)

                                                            CCACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCAT                                 <  SRR4302535.3536846/94‑1 (MQ=60)

                                                             CACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGGGGCATG                                >  SRR4302535.999815/1‑94 (MQ=60)

                                                             CACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATG                                <  SRR4302535.3972148/94‑1 (MQ=60)

                                                             CACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATG                                >  SRR4302535.142186/1‑94 (MQ=60)

                                                              ACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGA                               >  SRR4302535.3454158/1‑94 (MQ=60)

                                                              ACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGA                               >  SRR4302535.1161992/1‑94 (MQ=60)

                                                              ACCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGA                               <  SRR4302535.265384/94‑1 (MQ=60)

                                                               CCGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGAT                              <  SRR4302535.1777035/94‑1 (MQ=60)

                                                                CGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATG                             <  SRR4302535.4049879/94‑1 (MQ=60)

                                                                CGAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATG                             <  SRR4302535.2889649/94‑1 (MQ=60)

                                                                 GAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGT                            >  SRR4302535.3194502/1‑94 (MQ=60)

                                                                 GAATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGT                            >  SRR4302535.1019578/1‑94 (MQ=60)

                                                                  AATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTA                           <  SRR4302535.3392852/94‑1 (MQ=60)

                                                                  AATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTA                           >  SRR4302535.3863380/1‑94 (MQ=60)

                                                                  AATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTA                           <  SRR4302535.621775/94‑1 (MQ=60)

                                                                  AATGCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTA                           <  SRR4302535.2829823/94‑1 (MQ=60)

                                                                     GCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATT                        <  SRR4302535.4658615/94‑1 (MQ=60)

                                                                     GCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATT                        <  SRR4302535.1088017/94‑1 (MQ=60)

                                                                     GCATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATT                        <  SRR4302535.3382799/94‑1 (MQ=60)

                                                                      CATGGCTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTG                       >  SRR4302535.3440227/1‑94 (MQ=60)

                                                                       ATGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGC                      <  SRR4302535.176079/94‑1 (MQ=60)

                                                                        TGGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCC                     >  SRR4302535.650923/1‑94 (MQ=60)

                                                                         GGTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCC                    <  SRR4302535.3127917/94‑1 (MQ=60)

                                                                          GTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCT                   <  SRR4302535.1749583/94‑1 (MQ=60)

                                                                          GTTACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCT                   <  SRR4302535.3053726/94‑1 (MQ=60)

                                                                             ACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCA                <  SRR4302535.3731752/94‑1 (MQ=60)

                                                                             ACCGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCA                >  SRR4302535.3207307/1‑94 (MQ=60)

                                                                              ACGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCAC               <  SRR4302535.2587142/94‑1 (MQ=60)

                                                                               CGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACC              >  SRR4302535.3627485/1‑94 (MQ=60)

                                                                               CGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACC              >  SRR4302535.3565572/1‑94 (MQ=60)

                                                                               CGACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACC              >  SRR4302535.2964203/1‑94 (MQ=60)

                                                                                GACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCT             <  SRR4302535.2032009/94‑1 (MQ=60)

                                                                                 ACCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTC            <  SRR4302535.442595/94‑1 (MQ=60)

                                                                                  CCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCG           <  SRR4302535.1454373/94‑1 (MQ=60)

                                                                                  CCTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCG           <  SRR4302535.1677395/94‑1 (MQ=60)

                                                                                   CTGCCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGC          <  SRR4302535.3866104/94‑1 (MQ=60)

                                                                                      CCGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGA       >  SRR4302535.3244100/1‑94 (MQ=60)

                                                                                       CGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAA      >  SRR4302535.1839733/1‑94 (MQ=60)

                                                                                        GAAAAGCGATGCAGCTGACTTAGGGGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAA     >  SRR4302535.1533977/1‑94 (MQ=60)

                                                                                        GAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAA     >  SRR4302535.303718/1‑94 (MQ=60)

                                                                                         AAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAT    <  SRR4302535.2483944/94‑1 (MQ=60)

                                                                                         AAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAT    >  SRR4302535.247619/1‑94 (MQ=60)

                                                                                         AAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAT    <  SRR4302535.2330447/94‑1 (MQ=60)

                                                                                         AAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAAA    >  SRR4302535.2926378/1‑94 (MQ=60)

                                                                                          AAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGGAATA   >  SRR4302535.4242773/1‑94 (MQ=60)

                                                                                           AAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAA  <  SRR4302535.3754347/94‑1 (MQ=60)

CAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAA  >  NC_000913/4370089‑4370273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`