Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,382,443	A→G	T357A (ACG→GCG)	yjeM →	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,382,443	0	A	G	100.0%	703.3 / NA	226	T357A (ACG→GCG)	yjeM	putative transport
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (132/94); total (132/94)

Only 100 of 239 total aligned reads displayed.

GCGCGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTT  >  NC_000913/4382353‑4382532

gcgcGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCg                                                                                         >  2:3615140/1‑93 (MQ=255)

  gcgTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGcc                                                                                       >  1:2680519/1‑93 (MQ=255)

   cgTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCg                                                                                      >  1:1691855/1‑93 (MQ=255)

     tATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaa                                                                                    >  1:2314763/1‑93 (MQ=255)

     tATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaa                                                                                    >  2:179132/1‑93 (MQ=255)

      aTTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaaa                                                                                   >  1:4628021/1‑93 (MQ=255)

      aTTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaaa                                                                                   >  1:2908492/1‑93 (MQ=255)

      aTTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaaa                                                                                   >  1:3657958/1‑93 (MQ=255)

       ttACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGTAAGCCATCATCCAGGGGGCGCCGCAAg                                                                                  >  1:2127038/1‑93 (MQ=255)

       ttACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAg                                                                                  >  1:1038045/1‑93 (MQ=255)

         aCTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCa                                                                                <  1:4131080/93‑1 (MQ=255)

          cTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCAt                                                                               <  2:27478/93‑1 (MQ=255)

           tGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCAtt                                                                              >  2:4413580/1‑93 (MQ=255)

           cggACTTTCGTTGTTCCTCACCTACCTCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCAtt                                                                              <  2:2430558/92‑1 (MQ=255)

             gACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATtgt                                                                            >  2:1814107/1‑93 (MQ=255)

               cTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTgg                                                                          >  2:3908277/1‑93 (MQ=255)

               cTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTgg                                                                          >  1:2838091/1‑93 (MQ=255)

               cTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTgg                                                                          >  2:1584529/1‑93 (MQ=255)

                tttCGTTGTTCCTCGCCTATACCGGTGCGTTCTTTACGTTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGc                                                                         <  2:2471911/93‑1 (MQ=255)

                tttCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGc                                                                         >  1:258975/1‑93 (MQ=255)

                 ttCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGcc                                                                        >  2:964407/1‑93 (MQ=255)

                    gATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGa                                                                     <  1:2971546/93‑1 (MQ=255)

                    gATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGa                                                                     >  1:3607707/1‑93 (MQ=255)

                       gTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAcc                                                                  >  2:2928571/1‑93 (MQ=255)

                       gTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAcc                                                                  <  2:109074/93‑1 (MQ=255)

                       gTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAcc                                                                  >  2:4026398/1‑93 (MQ=255)

                       gTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAcc                                                                  >  1:980070/1‑93 (MQ=255)

                        ttCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCg                                                                 >  2:1488921/1‑93 (MQ=255)

                           cTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATg                                                              <  2:2801547/93‑1 (MQ=255)

                            tCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGa                                                             <  1:1482424/93‑1 (MQ=255)

                             cGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCTCCGAAAGCATTGTGGCCGGAACCGATGAc                                                            <  2:4116206/93‑1 (MQ=255)

                              gCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGAcg                                                           >  1:1895294/1‑93 (MQ=255)

                               ccTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGAcgc                                                          >  2:285247/1‑93 (MQ=255)

                               ccTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGAcgc                                                          <  2:115393/93‑1 (MQ=255)

                                 tataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACgcgc                                                        >  1:2784858/1‑93 (MQ=255)

                                 tataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACgcgc                                                        >  1:3347442/1‑93 (MQ=255)

                                 tataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACgcgc                                                        >  2:3471183/1‑93 (MQ=255)

                                  ataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGcc                                                       >  1:986757/1‑93 (MQ=255)

                                  ataCCGGGGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGcc                                                       >  2:2886686/1‑93 (MQ=255)

                                    aCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTg                                                     >  1:120843/1‑93 (MQ=255)

                                       ggTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCGTTGTGGCCGGAACCGATGACGCGCCTgtct                                                  >  2:1355998/1‑90 (MQ=255)

                                       ggTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAt                                                  >  2:1885098/1‑93 (MQ=255)

                                       ggTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAt                                                  >  2:3041949/1‑93 (MQ=255)

                                       ggTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAt                                                  <  1:429179/93‑1 (MQ=255)

                                       ggTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAt                                                  <  1:3292018/93‑1 (MQ=255)

                                        gTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATg                                                 >  1:437482/1‑93 (MQ=255)

                                         tGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGc                                                <  1:2414640/93‑1 (MQ=255)

                                          gCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCg                                               >  1:882800/1‑93 (MQ=255)

                                          gCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCg                                               >  1:4161592/1‑93 (MQ=255)

                                             tttcttACGCTTTGCTATTCACCGTTGAAAGCCATCACCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATg                                            <  1:3795332/89‑1 (MQ=255)

                                             ttCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATg                                            <  2:3143457/93‑1 (MQ=255)

                                             ttCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATg                                            >  1:682107/1‑93 (MQ=255)

                                             ttCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATg                                            <  1:636587/93‑1 (MQ=255)

                                               ttttACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATggg                                          <  2:868138/92‑1 (MQ=255)

                                                 ttACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGa                                        >  2:671392/1‑93 (MQ=255)

                                                  tACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGAt                                       >  1:3382164/1‑93 (MQ=255)

                                                   aCGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATg                                      >  2:1331655/1‑93 (MQ=255)

                                                    cGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATTACGCGCCTTAATGCGATGGGGATGc                                     <  2:767323/93‑1 (MQ=255)

                                                    cGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGc                                     >  1:4478712/1‑93 (MQ=255)

                                                     gCTTTGCTATTCACCGTTGAAAGGCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGcc                                    >  2:3782178/1‑93 (MQ=255)

                                                     gCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGcc                                    <  1:4679560/93‑1 (MQ=255)

                                                       tttGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGt                                  <  1:1509684/93‑1 (MQ=255)

                                                        ttGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTc                                 <  2:1667521/93‑1 (MQ=255)

                                                        ttGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTc                                 >  2:444693/1‑93 (MQ=255)

                                                         tGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCt                                <  1:1783566/93‑1 (MQ=255)

                                                          gCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGa                                                             >  1:4232787/1‑63 (MQ=255)

                                                          gCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGa                                                             <  2:4232787/63‑1 (MQ=255)

                                                          gCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTa                               >  1:3093867/1‑93 (MQ=255)

                                                          gCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTa                               >  1:542183/1‑93 (MQ=255)

                                                            tATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATc                             >  1:1176241/1‑93 (MQ=255)

                                                            tATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATc                             >  1:2054823/1‑93 (MQ=255)

                                                             aTTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCg                            >  2:56774/1‑93 (MQ=255)

                                                              ttCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGc                           <  2:465238/93‑1 (MQ=255)

                                                                cACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCa                         <  1:1822342/93‑1 (MQ=255)

                                                                  ccGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAtg                       <  2:4186859/93‑1 (MQ=255)

                                                                   cGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAtgt                      <  1:4010467/93‑1 (MQ=255)

                                                                    gTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAtgtg                     >  1:1635869/1‑93 (MQ=255)

                                                                       gAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTTGAt                  >  1:3958427/1‑93 (MQ=255)

                                                                          aGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGCTGCCGTCTATCGCCATGTGGATGcg               >  2:2758699/1‑92 (MQ=255)

                                                                          aGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCCGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCa               <  1:2287406/93‑1 (MQ=255)

                                                                           gCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAg              >  2:266696/1‑93 (MQ=255)

                                                                           gCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAg              >  1:1731017/1‑93 (MQ=255)

                                                                           gCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAg              >  1:3773585/1‑93 (MQ=255)

                                                                            ccATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGt             <  2:3983397/93‑1 (MQ=255)

                                                                             catcatCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGGTGCCGTg            >  2:845716/1‑93 (MQ=255)

                                                                             catcatCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTg            >  1:3131011/1‑93 (MQ=255)

                                                                             catcatCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTg            >  2:2617194/1‑93 (MQ=255)

                                                                             catcatCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTg            >  2:1091724/1‑93 (MQ=255)

                                                                              atcatcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGc           <  1:3066100/93‑1 (MQ=255)

                                                                              atcatcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGc           <  1:1095766/93‑1 (MQ=255)

                                                                               tcatcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCg          <  1:1259526/93‑1 (MQ=255)

                                                                               tcatcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCg          >  2:3815540/1‑93 (MQ=255)

                                                                                 atcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCggg        >  2:2188282/1‑93 (MQ=255)

                                                                                   ccAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggtt      <  1:3872832/93‑1 (MQ=255)

                                                                                    cAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttg     <  1:1346854/93‑1 (MQ=255)

                                                                                    cAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttg     <  2:4527673/93‑1 (MQ=255)

                                                                                    cAGGGGCCCCCTAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttg     <  2:3343685/93‑1 (MQ=255)

                                                                                     aGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttgg    >  1:4383412/1‑93 (MQ=255)

                                                                                      ggggGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttggt   <  1:3681273/93‑1 (MQ=255)

                                                                                       ggggCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGACTGAATGCGTTGGGGATGCCGTCTATCGCCATGGCGGTGCAGCGCCggttggct  >  2:231472/1‑91 (MQ=255)

GCGCGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTT  >  NC_000913/4382353‑4382532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTGCGCGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTTA  >  NC_000913/4382350‑4382533

TTTGCGCGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGG                                                                                            <  SRR4302535.237802/94‑1 (MQ=60)

 TTGCGCGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGC                                                                                           >  SRR4302535.883448/1‑94 (MQ=60)

    CGCGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCC                                                                                        >  SRR4302535.2699695/1‑94 (MQ=60)

     GCGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCG                                                                                       >  SRR4302535.1704094/1‑94 (MQ=60)

      CGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGA                                                                                      >  SRR4302535.3399582/1‑94 (MQ=60)

      CGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGA                                                                                      >  SRR4302535.1242742/1‑94 (MQ=60)

       GTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAA                                                                                     >  SRR4302535.2331325/1‑94 (MQ=60)

        TATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAA                                                                                    >  SRR4302535.4659434/1‑94 (MQ=60)

        TATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAA                                                                                    >  SRR4302535.2929049/1‑94 (MQ=60)

        TATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAA                                                                                    >  SRR4302535.3683278/1‑94 (MQ=60)

         ATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGTAAGCCATCATCCAGGGGGCGCCGCAAG                                                                                   >  SRR4302535.2142373/1‑94 (MQ=60)

         ATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAG                                                                                   >  SRR4302535.1045417/1‑94 (MQ=60)

          TTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGC                                                                                  >  SRR4302535.1523088/1‑94 (MQ=60)

           TACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCCTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCA                                                                                 <  SRR4302535.3128067/94‑1 (MQ=60)

            ACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCAT                                                                                <  SRR4302535.4159344/94‑1 (MQ=60)

            ACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCAT                                                                                <  SRR4302535.1716518/94‑1 (MQ=60)

              TGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTG                                                                              >  SRR4302535.3093720/1‑94 (MQ=60)

              TGGACTTTCGATGTTCCTCGCCGATACCGGTGCGTTCTTTACGTTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTG                                                                              <  SRR4302535.4698549/94‑1 (MQ=60)

                GACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTG                                                                            <  SRR4302535.4409792/94‑1 (MQ=60)

                GACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTG                                                                            <  SRR4302535.1777938/94‑1 (MQ=60)

                 ACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGG                                                                           <  SRR4302535.566220/94‑1 (MQ=60)

                 ACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGG                                                                           >  SRR4302535.2858226/1‑94 (MQ=60)

                 ACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGG                                                                           <  SRR4302535.120493/94‑1 (MQ=60)

                  CTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGC                                                                          >  SRR4302535.260766/1‑94 (MQ=60)

                  CTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGC                                                                          >  SRR4302535.3316322/1‑94 (MQ=60)

                  CTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGC                                                                          >  SRR4302535.3715289/1‑94 (MQ=60)

                  CTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGC                                                                          <  SRR4302535.4220861/94‑1 (MQ=60)

                   TTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCC                                                                         <  SRR4302535.3754199/94‑1 (MQ=60)

                     TCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGG                                                                       >  SRR4302535.3701221/1‑94 (MQ=60)

                      CGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGA                                                                      >  SRR4302535.2438786/1‑94 (MQ=60)

                      CGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGA                                                                      >  SRR4302535.3632727/1‑94 (MQ=60)

                       GATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAA                                                                     <  SRR4302535.2992404/94‑1 (MQ=60)

                        ATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAACGCATTGTGGCCGGAAC                                                                    >  SRR4302535.1497478/1‑94 (MQ=60)

                         TGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACC                                                                   >  SRR4302535.1808543/1‑94 (MQ=60)

                         TGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACC                                                                   >  SRR4302535.987036/1‑94 (MQ=60)

                         TGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACC                                                                   <  SRR4302535.1388726/94‑1 (MQ=60)

                         TGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACC                                                                   >  SRR4302535.1655043/1‑94 (MQ=60)

                          GTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCG                                                                  >  SRR4302535.1605230/1‑94 (MQ=60)

                          GTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCG                                                                  <  SRR4302535.2742216/94‑1 (MQ=60)

                              CTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGA                                                              <  SRR4302535.966756/94‑1 (MQ=60)

                               TCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGAC                                                             <  SRR4302535.459161/94‑1 (MQ=60)

                               TCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGAC                                                             <  SRR4302535.1493025/94‑1 (MQ=60)

                                CGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACG                                                            >  SRR4302535.1908932/1‑94 (MQ=60)

                                   CTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGC                                                         >  SRR4302535.3995437/1‑94 (MQ=60)

                                   CTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGC                                                         >  SRR4302535.11887/1‑94 (MQ=60)

                                   CTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGC                                                         >  SRR4302535.3370761/1‑94 (MQ=60)

                                   CTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGC                                                         >  SRR4302535.2804674/1‑94 (MQ=60)

                                    TATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCC                                                        >  SRR4302535.993769/1‑94 (MQ=60)

                                     ATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCT                                                       <  SRR4302535.222178/94‑1 (MQ=60)

                                     ATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCT                                                       >  SRR4302535.1904442/1‑94 (MQ=60)

                                     ATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCT                                                       >  SRR4302535.2336365/1‑94 (MQ=60)

                                      TACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTG                                                      >  SRR4302535.121690/1‑94 (MQ=60)

                                      TACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTG                                                      <  SRR4302535.1973250/94‑1 (MQ=60)

                                      TACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTG                                                      <  SRR4302535.589039/94‑1 (MQ=60)

                                         CGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAT                                                   >  SRR4302535.4319592/1‑94 (MQ=60)

                                         CGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAT                                                   >  SRR4302535.1129025/1‑94 (MQ=60)

                                          GGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATG                                                  <  SRR4302535.3314908/94‑1 (MQ=60)

                                          GGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATG                                                  >  SRR4302535.440540/1‑94 (MQ=60)

                                          GGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATG                                                  <  SRR4302535.432164/94‑1 (MQ=60)

                                            TGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCG                                                >  SRR4302535.4190077/1‑94 (MQ=60)

                                            TGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCG                                                >  SRR4302535.889051/1‑94 (MQ=60)

                                            TGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCG                                                <  SRR4302535.2432022/94‑1 (MQ=60)

                                              CGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCATGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGAT                                              >  SRR4302535.3318581/1‑94 (MQ=60)

                                              CGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGAT                                              >  SRR4302535.2129909/1‑94 (MQ=60)

                                               GTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATG                                             >  SRR4302535.686882/1‑94 (MQ=60)

                                               GTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATG                                             >  SRR4302535.2966779/1‑94 (MQ=60)

                                               GTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATG                                             >  SRR4302535.1374654/1‑94 (MQ=60)

                                                tttcTTACGCTTTGCTATTCACCGTTGAAAGCCATCACCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGG                                            <  SRR4302535.3821494/90‑1 (MQ=60)

                                                TTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGG                                            >  SRR4302535.1336002/1‑94 (MQ=60)

                                                TTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGG                                            <  SRR4302535.641027/94‑1 (MQ=60)

                                                TTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGG                                            <  SRR4302535.3656970/94‑1 (MQ=60)

                                                  CTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGG                                          >  SRR4302535.3872653/1‑94 (MQ=60)

                                                  CTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGG                                          >  SRR4302535.270933/1‑94 (MQ=60)

                                                    TTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGAT                                        >  SRR4302535.3405676/1‑94 (MQ=60)

                                                     TACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGTCGGAACCGATGACGCGCCTGAATGCGATGGGGATG                                       >  SRR4302535.3955510/1‑94 (MQ=60)

                                                      ACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGC                                      >  SRR4302535.4509461/1‑94 (MQ=60)

                                                      ACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGC                                      >  SRR4302535.19021/1‑94 (MQ=60)

                                                        GCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCG                                    <  SRR4302535.4711151/94‑1 (MQ=60)

                                                         CTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGACGT                                   >  SRR4302535.2967966/1‑94 (MQ=60)

                                                          TTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTC                                  >  SRR4302535.3090149/1‑94 (MQ=60)

                                                          TTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTC                                  <  SRR4302535.1520564/94‑1 (MQ=60)

                                                            TGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACaccacgcagatcggaagagcggttcagca                                >  SRR4302535.4261753/1‑65 (MQ=60)

                                                            TGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTA                                >  SRR4302535.545969/1‑94 (MQ=60)

                                                            TGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTA                                <  SRR4302535.1796474/94‑1 (MQ=60)

                                                            TGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTA                                <  SRR4302535.93210/94‑1 (MQ=60)

                                                            TGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTA                                >  SRR4302535.3115414/1‑94 (MQ=60)

                                                            TGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTA                                <  SRR4302535.4096838/94‑1 (MQ=60)

                                                             TCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTAT                               <  SRR4302535.2806457/94‑1 (MQ=60)

                                                              CTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATC                              >  SRR4302535.2069623/1‑94 (MQ=60)

                                                              CTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATC                              <  SRR4302535.2214756/94‑1 (MQ=60)

                                                              CTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATC                              >  SRR4302535.1184639/1‑94 (MQ=60)

                                                               TATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCG                             >  SRR4302535.4269135/1‑94 (MQ=60)

                                                                ATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGC                            >  SRR4302535.995280/1‑94 (MQ=60)

                                                                   CACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAT                         <  SRR4302535.1835506/94‑1 (MQ=60)

                                                                      CGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTG                      >  SRR4302535.4145463/1‑94 (MQ=60)

                                                                      CGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTG                      <  SRR4302535.4173307/94‑1 (MQ=60)

                                                                      CGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTG                      <  SRR4302535.4037901/94‑1 (MQ=60)

                                                                      CGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTG                      >  SRR4302535.1647690/1‑94 (MQ=60)

                                                                      CGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTG                      <  SRR4302535.2314351/94‑1 (MQ=60)

                                                                      CGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTG                      <  SRR4302535.2903572/94‑1 (MQ=60)

                                                                        TTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGGCGTCTATCGCCATGTGGT                    >  SRR4302535.3286929/1‑94 (MQ=60)

                                                                         TGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTTGAT                   >  SRR4302535.3985458/1‑94 (MQ=60)

                                                                         TGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGAT                   >  SRR4302535.4419696/1‑94 (MQ=60)

                                                                         TGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGAT                   >  SRR4302535.1051803/1‑94 (MQ=60)

                                                                            AAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCA                <  SRR4302535.4400826/94‑1 (MQ=60)

                                                                             AGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAG               >  SRR4302535.1743531/1‑94 (MQ=60)

                                                                             AGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAG               <  SRR4302535.3848202/94‑1 (MQ=60)

                                                                             AGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAG               >  SRR4302535.3799613/1‑94 (MQ=60)

                                                                             AGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAG               <  SRR4302535.854004/94‑1 (MQ=60)

                                                                             AGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCCGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAG               <  SRR4302535.2303747/94‑1 (MQ=60)

                                                                              GCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGT              <  SRR4302535.2428976/94‑1 (MQ=60)

                                                                              GCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGT              <  SRR4302535.357134/94‑1 (MQ=60)

                                                                              ACCATCAGCCAGGGGGCGCCGAAAGCATTTTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGT              <  SRR4302535.993345/94‑1 (MQ=60)

                                                                               CCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTG             <  SRR4302535.648853/94‑1 (MQ=60)

                                                                               CCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTG             >  SRR4302535.3152818/1‑94 (MQ=60)

                                                                                 ATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCG           <  SRR4302535.1103564/94‑1 (MQ=60)

                                                                                 ATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCG           <  SRR4302535.3087528/94‑1 (MQ=60)

                                                                                  TCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGG          >  SRR4302535.3615054/1‑94 (MQ=60)

                                                                                  TCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGG          <  SRR4302535.1268541/94‑1 (MQ=60)

                                                                                   CATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGG         <  SRR4302535.3047694/94‑1 (MQ=60)

                                                                                    ATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGT        >  SRR4302535.4409018/1‑94 (MQ=60)

                                                                                      CCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTG      <  SRR4302535.1761525/94‑1 (MQ=60)

                                                                                      CCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTG      <  SRR4302535.3899445/94‑1 (MQ=60)

                                                                                       CAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGG     <  SRR4302535.2664505/94‑1 (MQ=60)

                                                                                       CAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGG     <  SRR4302535.1356469/94‑1 (MQ=60)

                                                                                       CAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGG     >  SRR4302535.4413400/1‑94 (MQ=60)

                                                                                        AGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGT    >  SRR4302535.4713331/1‑94 (MQ=60)

                                                                                        AGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGT    >  SRR4302535.4672864/1‑94 (MQ=60)

                                                                                         GGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTT   <  SRR4302535.3706750/94‑1 (MQ=60)

                                                                                          GGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTTA  <  SRR4302535.381736/94‑1 (MQ=60)

TTTGCGCGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTTA  >  NC_000913/4382350‑4382533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`