Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,390,710	T→C	V312V (GTA→GTG)	yjeS ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,390,710	0	T	C	100.0%	703.2 / NA	223	V312V (GTA→GTG)	yjeS	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (89/134); total (89/134)

Only 100 of 232 total aligned reads displayed.

CGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCTACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAGGC  >  NC_000913/4390620‑4390799

cGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCAc                                                                                         <  2:1387086/93‑1 (MQ=255)

  cTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACgg                                                                                       >  2:1453758/1‑93 (MQ=255)

   tATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGc                                                                                      >  1:4612131/1‑93 (MQ=255)

    aTGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCg                                                                                     >  2:4265425/1‑93 (MQ=255)

     tgtgCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGa                                                                                    >  1:94673/1‑93 (MQ=255)

        gCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGatat                                                                                 >  1:3226390/1‑93 (MQ=255)

        gCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGatat                                                                                 >  2:332223/1‑93 (MQ=255)

        gCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGatat                                                                                 >  1:1813397/1‑93 (MQ=255)

         cTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATAtt                                                                                <  1:3687219/93‑1 (MQ=255)

         cTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATAtt                                                                                <  1:2109045/93‑1 (MQ=255)

          tCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTa                                                                               >  1:924453/1‑93 (MQ=255)

          tCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTa                                                                               >  2:3154120/1‑93 (MQ=255)

           cATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTAc                                                                              <  1:1216060/93‑1 (MQ=255)

           cATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTAc                                                                              >  1:2456840/1‑93 (MQ=255)

            aTCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACg                                                                             >  2:2576382/1‑93 (MQ=255)

              cGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCa                                                                           <  1:3098267/93‑1 (MQ=255)

               gagaAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGAATTGCCTAATGCCACGGCGATATTACGCAg                                                                          >  1:494412/1‑93 (MQ=255)

                agaAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGc                                                                         >  2:1236744/1‑93 (MQ=255)

                 gaAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGcc                                                                        >  1:1728172/1‑93 (MQ=255)

                    gTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAAc                                                                     >  1:3514318/1‑93 (MQ=255)

                     tGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACg                                                                    <  2:3650777/93‑1 (MQ=255)

                      gggTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGc                                                                   <  1:3845784/93‑1 (MQ=255)

                       ggTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCa                                                                  <  2:374947/93‑1 (MQ=255)

                        gTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAg                                                                 >  2:2006146/1‑93 (MQ=255)

                         tGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAgg                                                                <  1:1324775/93‑1 (MQ=255)

                         tGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAgg                                                                >  1:162691/1‑93 (MQ=255)

                         tGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAgg                                                                <  2:3399132/93‑1 (MQ=255)

                          gCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGt                                                               <  2:2315405/93‑1 (MQ=255)

                           cTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTg                                                              <  1:2887364/93‑1 (MQ=255)

                             cACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGAc                                                            >  1:4565534/1‑93 (MQ=255)

                             cACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGAc                                                            <  2:3634630/93‑1 (MQ=255)

                             cACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGAc                                                            >  2:1550728/1‑93 (MQ=255)

                              aCCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGAcc                                                           >  2:267942/1‑93 (MQ=255)

                                cTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCaa                                                         <  2:3427111/93‑1 (MQ=255)

                                cTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCaa                                                         >  2:3470354/1‑93 (MQ=255)

                                 tttACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAAt                                                        >  2:2613741/1‑93 (MQ=255)

                                 tttACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAAt                                                        <  1:1509795/93‑1 (MQ=255)

                                  ttACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATa                                                       <  2:2449708/93‑1 (MQ=255)

                                  ttACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATa                                                       <  1:3019571/93‑1 (MQ=255)

                                   tACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATac                                                      <  1:3146242/93‑1 (MQ=255)

                                   tACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATac                                                      <  1:1017116/93‑1 (MQ=255)

                                   tACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATac                                                      <  2:485712/93‑1 (MQ=255)

                                     cGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATacga                                                    <  2:2348745/93‑1 (MQ=255)

                                     cGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATacga                                                    >  1:3361414/1‑93 (MQ=255)

                                      gACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATacgac                                                   >  1:3924760/1‑93 (MQ=255)

                                      gACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATacgac                                                   <  1:1842/93‑1 (MQ=255)

                                       aCTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATacgacg                                                  >  2:4353519/1‑93 (MQ=255)

                                        cTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATAcgacga                                                 >  2:835592/1‑93 (MQ=255)

                                        cTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATAcgacga                                                 <  2:1860290/93‑1 (MQ=255)

                                         tttCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGaa                                                >  2:557047/1‑93 (MQ=255)

                                         tttCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGaa                                                <  2:1843115/93‑1 (MQ=255)

                                         tttCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGaa                                                >  1:855929/1‑93 (MQ=255)

                                          ttCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAAt                                               >  2:2398438/1‑93 (MQ=255)

                                             cAGCGCTGTCAAAATCGTTTCATCCCAAGTGGCATTGCCTCATCCCACGGCGATATTACGCAGACAACGCAGGTGACCAATACGACGAATCGc                                            >  1:2802519/1‑93 (MQ=255)

                                              aGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGcc                                           <  2:4489810/93‑1 (MQ=255)

                                                cgcTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGa                                         <  1:2666870/93‑1 (MQ=255)

                                                 ggtGTCAGAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCATCGCAGGTGACCAATACGACGAATCGCCGAt                                        <  1:190864/91‑1 (MQ=255)

                                                 gcTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGAt                                        <  2:3720982/93‑1 (MQ=255)

                                                    gTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCt                                     <  2:2856427/93‑1 (MQ=255)

                                                     tCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACAAATCGCCGATCCtt                                    <  1:1621963/93‑1 (MQ=255)

                                                        aaaTCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCg                                 <  1:1976854/93‑1 (MQ=255)

                                                        aaaTCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCg                                 >  1:4265981/1‑93 (MQ=255)

                                                         aaTCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGt                                <  2:75347/93‑1 (MQ=255)

                                                             gTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACt                            >  1:4397555/1‑93 (MQ=255)

                                                              tttCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACtt                           <  2:3056305/93‑1 (MQ=255)

                                                              tttCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACtt                           <  2:3883730/93‑1 (MQ=255)

                                                              tttCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGACCCTTCCGTGACtt                           <  1:1081203/93‑1 (MQ=255)

                                                               ttCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACttt                          >  1:643334/1‑93 (MQ=255)

                                                                tCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACtttt                         >  2:1198486/1‑93 (MQ=255)

                                                                tCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACtttt                         >  1:2374488/1‑93 (MQ=255)

                                                                tCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCAGTGACtttt                         <  2:226027/93‑1 (MQ=255)

                                                                  aTCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTaa                       <  1:1030900/93‑1 (MQ=255)

                                                                  aTCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTaa                       >  1:2266327/1‑93 (MQ=255)

                                                                  aTCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTaa                       >  2:1689371/1‑93 (MQ=255)

                                                                   tCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTaaa                      >  2:2899827/1‑93 (MQ=255)

                                                                      cAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTaaaaat                   >  1:3791286/1‑92 (MQ=255)

                                                                       aaGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACt                  <  1:4032527/93‑1 (MQ=255)

                                                                        aGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACtt                 <  2:890045/93‑1 (MQ=255)

                                                                        aGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACtt                 >  1:970808/1‑93 (MQ=255)

                                                                         ggggCATTGCTTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGTCTTTTAAAAACTtc                <  1:2426219/93‑1 (MQ=255)

                                                                         ggggCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTtc                <  2:1538670/93‑1 (MQ=255)

                                                                         ggggCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTtc                <  1:247653/93‑1 (MQ=255)

                                                                         ggggCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTtc                <  2:393213/93‑1 (MQ=255)

                                                                          gggCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTtct               <  1:789083/93‑1 (MQ=255)

                                                                            gCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTctct             <  2:2649115/93‑1 (MQ=255)

                                                                            gCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTctct             <  2:1034517/93‑1 (MQ=255)

                                                                            gCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTctct             <  1:1386616/93‑1 (MQ=255)

                                                                            gCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTctct             <  1:1683891/93‑1 (MQ=255)

                                                                            gCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTctct             <  1:4106754/93‑1 (MQ=255)

                                                                               ttGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCg          >  2:2957606/1‑93 (MQ=255)

                                                                               ttGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCg          >  2:3573383/1‑93 (MQ=255)

                                                                                tGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGc         <  1:2571680/93‑1 (MQ=255)

                                                                                tGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGc         <  1:3984453/93‑1 (MQ=255)

                                                                                tGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGc         <  2:1088169/93‑1 (MQ=255)

                                                                                  ccTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTc       <  2:4065258/93‑1 (MQ=255)

                                                                                   cTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTcc      >  1:3169545/1‑93 (MQ=255)

                                                                                   cTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGACGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTcc      >  2:2189673/1‑93 (MQ=255)

                                                                                    tAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCa     <  1:3430424/93‑1 (MQ=255)

                                                                                     aaTGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAg    <  1:3423075/93‑1 (MQ=255)

                                                                                       tGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAGGc  <  2:4306867/93‑1 (MQ=255)

CGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCTACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAGGC  >  NC_000913/4390620‑4390799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCACGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCTACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAGGCGAAT  >  NC_000913/4390617‑4390803

CCACGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCC                                                                                               >  SRR4302535.2406360/1‑94 (MQ=60)

CCACGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGACTAATGCC                                                                                               >  SRR4302535.1863923/1‑94 (MQ=60)

 CACGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCA                                                                                              <  SRR4302535.2637278/94‑1 (MQ=60)

 CACGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCA                                                                                              >  SRR4302535.1548279/1‑94 (MQ=60)

 CACGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCA                                                                                              <  SRR4302535.1365449/94‑1 (MQ=60)

  ACGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCAC                                                                                             <  SRR4302535.1139965/94‑1 (MQ=60)

     CTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGC                                                                                          >  SRR4302535.3171447/1‑94 (MQ=60)

     CTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGC                                                                                          >  SRR4302535.4643468/1‑94 (MQ=60)

       ATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGA                                                                                        >  SRR4302535.4083061/1‑94 (MQ=60)

       ATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGA                                                                                        >  SRR4302535.95349/1‑94 (MQ=60)

         GTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATA                                                                                      >  SRR4302535.3311510/1‑94 (MQ=60)

          TGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATAT                                                                                     <  SRR4302535.1945185/94‑1 (MQ=60)

          TGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATAT                                                                                     >  SRR4302535.1826509/1‑94 (MQ=60)

          TGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATAT                                                                                     >  SRR4302535.3248755/1‑94 (MQ=60)

           GCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATT                                                                                    <  SRR4302535.2459754/94‑1 (MQ=60)

            CTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTTCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTCATGCCACGGCGATATTA                                                                                   >  SRR4302535.3731518/1‑94 (MQ=60)

            CTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTA                                                                                   <  SRR4302535.2124254/94‑1 (MQ=60)

            CTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTA                                                                                   >  SRR4302535.931000/1‑94 (MQ=60)

            CTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTA                                                                                   <  SRR4302535.3712732/94‑1 (MQ=60)

             TCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTAC                                                                                  >  SRR4302535.2474557/1‑94 (MQ=60)

             TCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTAC                                                                                  <  SRR4302535.2247149/94‑1 (MQ=60)

              CATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACG                                                                                 <  SRR4302535.1625986/94‑1 (MQ=60)

              CATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACG                                                                                 <  SRR4302535.1224784/94‑1 (MQ=60)

              CATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACG                                                                                 <  SRR4302535.3114954/94‑1 (MQ=60)

              CATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACG                                                                                 >  SRR4302535.2191536/1‑94 (MQ=60)

                 CGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAG                                                                              <  SRR4302535.3119839/94‑1 (MQ=60)

                 CGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGAATTGCCTAATGCCACGGCGATATTACGCAG                                                                              >  SRR4302535.497880/1‑94 (MQ=60)

                  GAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGC                                                                             >  SRR4302535.3843100/1‑94 (MQ=60)

                   AGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCC                                                                            >  SRR4302535.3689749/1‑94 (MQ=60)

                   AGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCC                                                                            >  SRR4302535.1740663/1‑94 (MQ=60)

                   AGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCC                                                                            >  SRR4302535.4618651/1‑94 (MQ=60)

                   AGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCC                                                                            >  SRR4302535.3450937/1‑94 (MQ=60)

                     AAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAA                                                                          <  SRR4302535.3002110/94‑1 (MQ=60)

                      AGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAAC                                                                         >  SRR4302535.3538740/1‑94 (MQ=60)

                       ggtGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACG                                                                        <  SRR4302535.2672363/91‑1 (MQ=60)

                        TGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGC                                                                       >  SRR4302535.1271878/1‑94 (MQ=60)

                         GGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCA                                                                      <  SRR4302535.3872263/94‑1 (MQ=60)

                           GTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGG                                                                    >  SRR4302535.163829/1‑94 (MQ=60)

                            TGCTCCCCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGT                                                                   <  SRR4302535.1886261/94‑1 (MQ=60)

                            TGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGT                                                                   <  SRR4302535.2487/94‑1 (MQ=60)

                            TGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGT                                                                   <  SRR4302535.112873/94‑1 (MQ=60)

                            TGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGT                                                                   <  SRR4302535.1334232/94‑1 (MQ=60)

                             GCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTG                                                                  <  SRR4302535.4289139/94‑1 (MQ=60)

                              CTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGA                                                                 <  SRR4302535.2907794/94‑1 (MQ=60)

                              CTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGA                                                                 <  SRR4302535.941650/94‑1 (MQ=60)

                              CTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGCGA                                                                 >  SRR4302535.3453618/1‑94 (MQ=60)

                               TCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGAC                                                                >  SRR4302535.4596682/1‑94 (MQ=60)

                                CACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACC                                                               >  SRR4302535.3208611/1‑94 (MQ=60)

                                  CCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAA                                                             >  SRR4302535.624652/1‑94 (MQ=60)

                                  CCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAA                                                             >  SRR4302535.177205/1‑94 (MQ=60)

                                    TTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATA                                                           <  SRR4302535.1520675/94‑1 (MQ=60)

                                     TTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATAC                                                          <  SRR4302535.4316537/94‑1 (MQ=60)

                                     TTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATAC                                                          <  SRR4302535.3040719/94‑1 (MQ=60)

                                     TTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATAC                                                          >  SRR4302535.1577262/1‑94 (MQ=60)

                                     TTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATAC                                                          <  SRR4302535.1251323/94‑1 (MQ=60)

                                      TACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACG                                                         <  SRR4302535.3168120/94‑1 (MQ=60)

                                      TACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACG                                                         <  SRR4302535.3995373/94‑1 (MQ=60)

                                      TACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACG                                                         <  SRR4302535.4043161/94‑1 (MQ=60)

                                      TACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACG                                                         <  SRR4302535.1024343/94‑1 (MQ=60)

                                      TACGACTTTCCAGCGATGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATACCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACG                                                         <  SRR4302535.3995374/94‑1 (MQ=60)

                                       ACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGA                                                        <  SRR4302535.4632995/94‑1 (MQ=60)

                                       ACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGA                                                        >  SRR4302535.3384807/1‑94 (MQ=60)

                                        CGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGAC                                                       >  SRR4302535.3951578/1‑94 (MQ=60)

                                        CGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGAC                                                       >  SRR4302535.803748/1‑94 (MQ=60)

                                        CGACTTTCCAGCGCTGTCAAAATCGGTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGAC                                                       >  SRR4302535.2420916/1‑94 (MQ=60)

                                         GACTTTCCCGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACG                                                      <  SRR4302535.979648/94‑1 (MQ=60)

                                         GACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACG                                                      <  SRR4302535.1861/94‑1 (MQ=60)

                                           CTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAA                                                    >  SRR4302535.861963/1‑94 (MQ=60)

                                             TTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATC                                                  <  SRR4302535.794406/94‑1 (MQ=60)

                                             TTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATC                                                  <  SRR4302535.1702135/94‑1 (MQ=60)

                                             TTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATC                                                  <  SRR4302535.1638245/94‑1 (MQ=60)

                                              TCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCG                                                 <  SRR4302535.3121114/94‑1 (MQ=60)

                                              TCCAGCGCTGTCAAAACCGTTTCATCCCAAGGGGCATTCCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCG                                                 <  SRR4302535.3239349/94‑1 (MQ=60)

                                               CCAGCGCTGTCAAAATCGTTTCATCCCAAGTGGCATTGCCTCATCCCACGGCGATATTACGCAGACAACGCAGGTGACCAATACGACGAATCGC                                                >  SRR4302535.2822451/1‑94 (MQ=60)

                                               CCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGC                                                >  SRR4302535.1374028/1‑94 (MQ=60)

                                                CAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACAAATACGACGAATCGCC                                               >  SRR4302535.2449435/1‑94 (MQ=60)

                                                 AGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCG                                              <  SRR4302535.93157/94‑1 (MQ=60)

                                                   CGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGAT                                            >  SRR4302535.2620974/1‑94 (MQ=60)

                                                   CGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGAT                                            <  SRR4302535.2685961/94‑1 (MQ=60)

                                                   CGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGAT                                            >  SRR4302535.105044/1‑94 (MQ=60)

                                                    GGTGTCAGAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCATCGCAGGTGACCAATACGACGAATCGCCGATC                                           <  SRR4302535.192185/94‑1 (MQ=60)

                                                    GCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATC                                           >  SRR4302535.189353/1‑94 (MQ=60)

                                                      TGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCT                                         <  SRR4302535.3906853/94‑1 (MQ=60)

                                                       GGCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTT                                        <  SRR4302535.976446/94‑1 (MQ=60)

                                                        TCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACAAATCGCCGATCCTTC                                       <  SRR4302535.1633671/94‑1 (MQ=60)

                                                          AAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCG                                     >  SRR4302535.4295192/1‑94 (MQ=60)

                                                          AAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCG                                     <  SRR4302535.3806937/94‑1 (MQ=60)

                                                           AAATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGT                                    <  SRR4302535.1991091/94‑1 (MQ=60)

                                                            AATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTG                                   >  SRR4302535.1852777/1‑94 (MQ=60)

                                                             ATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATGCGACGAATCGCCGATCCTTCCGTGA                                  >  SRR4302535.4560659/1‑94 (MQ=60)

                                                             ATCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGA                                  >  SRR4302535.1728893/1‑94 (MQ=60)

                                                              TCGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCTAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGAC                                 <  SRR4302535.2535287/94‑1 (MQ=60)

                                                               CGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACT                                >  SRR4302535.2105212/1‑94 (MQ=60)

                                                               CGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACT                                >  SRR4302535.710067/1‑94 (MQ=60)

                                                               CGTTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACT                                >  SRR4302535.4427654/1‑94 (MQ=60)

                                                                 TTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTT                              >  SRR4302535.647826/1‑94 (MQ=60)

                                                                 TTTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGACCCTTCCGTGACTTT                              <  SRR4302535.1088894/94‑1 (MQ=60)

                                                                  TTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTT                             >  SRR4302535.2391544/1‑94 (MQ=60)

                                                                  TTCATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTT                             <  SRR4302535.2718410/94‑1 (MQ=60)

                                                                    CATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAA                           >  SRR4302535.2282477/1‑94 (MQ=60)

                                                                     ATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAAGGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAA                          >  SRR4302535.2989800/1‑94 (MQ=60)

                                                                     ATCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAA                          <  SRR4302535.1038221/94‑1 (MQ=60)

                                                                      TCCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAA                         <  SRR4302535.3410711/94‑1 (MQ=60)

                                                                       CCCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAA                        <  SRR4302535.1655917/94‑1 (MQ=60)

                                                                        CCAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAAT                       >  SRR4302535.3817426/1‑94 (MQ=60)

                                                                         CAAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACT                      <  SRR4302535.4233328/94‑1 (MQ=60)

                                                                          AAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTT                     <  SRR4302535.4060114/94‑1 (MQ=60)

                                                                          AAGGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTT                     >  SRR4302535.977698/1‑94 (MQ=60)

                                                                            GGGGCATTGCTTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGTCTTTTAAAAACTTCT                   <  SRR4302535.2443699/94‑1 (MQ=60)

                                                                            GGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCT                   <  SRR4302535.249352/94‑1 (MQ=60)

                                                                            GGGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCT                   <  SRR4302535.1037269/94‑1 (MQ=60)

                                                                             GGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTT                  >  SRR4302535.886616/1‑94 (MQ=60)

                                                                             GGGCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTC                  <  SRR4302535.794623/94‑1 (MQ=60)

                                                                               GCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTT                <  SRR4302535.284975/94‑1 (MQ=60)

                                                                               GCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTT                <  SRR4302535.1696087/94‑1 (MQ=60)

                                                                               GCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTT                <  SRR4302535.1396513/94‑1 (MQ=60)

                                                                               GCATTGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTT                <  SRR4302535.4134873/94‑1 (MQ=60)

                                                                                   TGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCT            <  SRR4302535.2590166/94‑1 (MQ=60)

                                                                                   TGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCT            <  SRR4302535.3462548/94‑1 (MQ=60)

                                                                                   TGCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCT            <  SRR4302535.4011677/94‑1 (MQ=60)

                                                                                    TCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTC           <  SRR4302535.48948/94‑1 (MQ=60)

                                                                                    GCCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTC           >  SRR4302535.1487162/1‑94 (MQ=60)

                                                                                     CCTAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCC          >  SRR4302535.3191498/1‑94 (MQ=60)

                                                                                       TAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAG        >  SRR4302535.2350028/1‑94 (MQ=60)

                                                                                       TAATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAG        <  SRR4302535.3454264/94‑1 (MQ=60)

                                                                                        AATGCCACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAGG       <  SRR4302535.3446881/94‑1 (MQ=60)

                                                                                             CACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATACTTCCGTGACTTTTAAAAACTTATCTTCGCTCCAGGCGAAT  >  SRR4302535.1194429/1‑94 (MQ=60)

CCACGCTATGTGCTCATCGAGAAGTGGGTGCTCACCTTTACGACTTTCCAGCGCTGTCAAAATCGTTTCATCCCAAGGGGCATTGCCTAATGCTACGGCGATATTACGCAGCCAACGCAGGTGACCAATACGACGAATCGCCGATCCTTCCGTGACTTTTAAAAACTTCTCTTCGCTCCAGGCGAAT  >  NC_000913/4390617‑4390803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`