Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,392,958 |
G→A |
G439S (GGC→AGC) |
yjeF → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,392,958 | 0 | G | A | 99.6%
| 843.4
/ ‑5.7
| 231 | G439S (GGC→AGC) | yjeF | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (113/117); total (113/118) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 239 total aligned reads displayed.
CGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCGGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCG > NC_000913/4392869‑4393047
|
cGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGgcagca < 2:828832/93‑1 (MQ=255)
ggTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCAt < 2:4398052/93‑1 (MQ=255)
gTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATg < 1:722722/93‑1 (MQ=255)
tGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATgg < 1:3991208/93‑1 (MQ=255)
tGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCg > 2:4072337/1‑93 (MQ=255)
gAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGa > 1:4524811/1‑93 (MQ=255)
gAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGa < 2:717627/93‑1 (MQ=255)
gAAAGGAGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGa > 2:3615513/1‑93 (MQ=255)
aaaGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGAt < 2:2053039/93‑1 (MQ=255)
aaaGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGAt > 1:2035395/1‑93 (MQ=255)
aGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGAtgt < 1:49852/93‑1 (MQ=255)
aGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGAtgt < 2:1180626/93‑1 (MQ=255)
aGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGAtgt > 2:4000127/1‑93 (MQ=255)
gTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGc < 1:2716523/93‑1 (MQ=255)
gTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGc < 1:1144002/93‑1 (MQ=255)
gTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGc < 2:1078300/93‑1 (MQ=255)
gCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGctc < 2:395650/93‑1 (MQ=255)
cGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGctctc < 1:606960/93‑1 (MQ=255)
cGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGctctc > 2:1800750/1‑93 (MQ=255)
gagccGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTg < 1:3333643/90‑1 (MQ=255)
gAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTg < 2:4600246/93‑1 (MQ=255)
aaCCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTgg < 1:302978/93‑1 (MQ=255)
aaCCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTgg < 1:3060107/93‑1 (MQ=255)
ccGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGta > 1:2939851/1‑93 (MQ=255)
cGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGtat > 2:2565886/1‑93 (MQ=255)
gTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGtatt > 2:46678/1‑93 (MQ=255)
ggTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGtattat < 2:3032187/93‑1 (MQ=255)
tCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTg < 2:1099187/93‑1 (MQ=255)
ccgccCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGgcg < 1:1923147/93‑1 (MQ=255)
gccCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCa > 1:3467230/1‑93 (MQ=255)
gccCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCa > 2:480348/1‑93 (MQ=255)
gccCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCa > 1:3733983/1‑93 (MQ=255)
cccATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAt > 1:1557449/1‑93 (MQ=255)
cccATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAt > 1:701441/1‑93 (MQ=255)
cccATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGGATTATTGGCGCAt > 2:3354319/1‑93 (MQ=255)
ctaTCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAtt < 1:941770/91‑1 (MQ=255)
ccATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAtt < 1:3796258/93‑1 (MQ=255)
ccATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAtt < 1:178226/93‑1 (MQ=255)
ccATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAtt > 2:98139/1‑93 (MQ=255)
ccATCCTGACGCTGTAGGCATTATTGATGCTGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTTCTCTCTGGTATTATTGGCGCAtt < 2:364151/93‑1 (MQ=255)
aTCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGc > 2:3394086/1‑93 (MQ=255)
aTCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGc < 1:1012933/93‑1 (MQ=255)
aTCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGc < 2:866859/93‑1 (MQ=255)
aTCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGc > 1:2318095/1‑93 (MQ=255)
tCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCt > 2:1440680/1‑93 (MQ=255)
ccTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCtt > 2:2889847/1‑93 (MQ=255)
tGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTgg < 1:4619976/93‑1 (MQ=255)
tGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTgg < 1:3188184/93‑1 (MQ=255)
tGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTgg < 1:3415947/93‑1 (MQ=255)
gCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCaa < 1:1339755/93‑1 (MQ=255)
gCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCaa > 2:344979/1‑93 (MQ=255)
tttAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCaaaa > 2:510488/1‑93 (MQ=255)
ttAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATGATTGGCGCATTGCTTGGGCaaaaa < 2:4518528/93‑1 (MQ=255)
tAGGCATTATTGATGCCTGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAAc < 1:1436488/93‑1 (MQ=255)
tAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAAc < 1:4101991/93‑1 (MQ=255)
aGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACt < 1:3759706/93‑1 (MQ=255)
ggCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTg > 1:3269100/1‑93 (MQ=255)
cATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTc > 1:2334337/1‑93 (MQ=255)
cATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTc < 2:2458303/93‑1 (MQ=255)
cATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTc > 2:138582/1‑93 (MQ=255)
ttattGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGc > 2:4177054/1‑93 (MQ=255)
ttattGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGc < 2:3759528/93‑1 (MQ=255)
attGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCg > 2:1977182/1‑93 (MQ=255)
ttGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGt > 2:2136559/1‑93 (MQ=255)
ttGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGt < 2:3275590/93‑1 (MQ=255)
gATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTat < 2:2297770/93‑1 (MQ=255)
gCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAGAACTGTCGCCGTatgat < 2:1625592/93‑1 (MQ=255)
gCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTatgat < 1:4558481/93‑1 (MQ=255)
gCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTatgat < 2:1809536/93‑1 (MQ=255)
cGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGc < 1:1027664/93‑1 (MQ=255)
cGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGc > 2:2545078/1‑93 (MQ=255)
cGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGc < 1:3515060/93‑1 (MQ=255)
ggAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCa > 1:2858607/1‑93 (MQ=255)
ggAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCa < 1:4183416/93‑1 (MQ=255)
gAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAg < 2:2277445/93‑1 (MQ=255)
gAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAg > 1:3011885/1‑93 (MQ=255)
aaaTGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGc < 2:4293314/93‑1 (MQ=255)
aaTGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGcc > 2:1255089/1‑93 (MQ=255)
tGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCtg > 2:1569261/1‑93 (MQ=255)
gCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCtgt < 2:3900246/93‑1 (MQ=255)
cAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCtgtg < 1:2557756/93‑1 (MQ=255)
aGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGc > 2:2597381/1‑93 (MQ=255)
ggCATGGCTAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCa > 2:4548521/1‑93 (MQ=255)
gCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAg > 1:793529/1‑93 (MQ=255)
gCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAg > 1:2407693/1‑93 (MQ=255)
gCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAg < 2:3813216/93‑1 (MQ=255)
aTGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGc < 1:983350/93‑1 (MQ=255)
aTGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGc > 1:1306536/1‑93 (MQ=255)
tGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCACAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCt > 1:1827631/1‑93 (MQ=255)
tGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCt > 2:938942/1‑93 (MQ=255)
ggCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCtg > 2:595612/1‑93 (MQ=255)
ggCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCtg < 1:1063254/93‑1 (MQ=255)
ggCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCtg < 2:58377/93‑1 (MQ=255)
gCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCtgt > 2:3142677/1‑93 (MQ=255)
aGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTc > 2:4134291/1‑93 (MQ=255)
aGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTc < 2:2942514/93‑1 (MQ=255)
gcggcaGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTcg > 1:2681760/1‑93 (MQ=255)
gcggcaGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTcg > 2:2971332/1‑93 (MQ=255)
cggcagCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTcgc < 1:2113074/93‑1 (MQ=255)
ggcagcATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTcgcg < 1:3639848/93‑1 (MQ=255)
|
CGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCGGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCG > NC_000913/4392869‑4393047
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTAGCGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCGGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCGCACG > NC_000913/4392865‑4393051
|
GTAGCGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCA > SRR4302535.725370/1‑94 (MQ=60)
GTAGCGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCA < SRR4302535.3525017/94‑1 (MQ=60)
GTAGCGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCA > SRR4302535.3526770/1‑94 (MQ=60)
TAGCGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAG < SRR4302535.2644931/94‑1 (MQ=60)
GTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGG < SRR4302535.727797/94‑1 (MQ=60)
GTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGG < SRR4302535.1093788/94‑1 (MQ=60)
TGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGG < SRR4302535.4018506/94‑1 (MQ=60)
GCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGC > SRR4302535.2457365/1‑94 (MQ=60)
GCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGC < SRR4302535.3466203/94‑1 (MQ=60)
GCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGC < SRR4302535.1380618/94‑1 (MQ=60)
GCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTGTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGC > SRR4302535.3315345/1‑94 (MQ=60)
TGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGA > SRR4302535.3719819/1‑94 (MQ=60)
TGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGA > SRR4302535.4555809/1‑94 (MQ=60)
GAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGAT > SRR4302535.2050058/1‑94 (MQ=60)
AAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATG < SRR4302535.1033640/94‑1 (MQ=60)
AAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATG < SRR4302535.3371605/94‑1 (MQ=60)
AGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTG < SRR4302535.50222/94‑1 (MQ=60)
GTGCGGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCT < SRR4302535.4563083/94‑1 (MQ=60)
GTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCT < SRR4302535.1152159/94‑1 (MQ=60)
GTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCT < SRR4302535.2735930/94‑1 (MQ=60)
GCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCT < SRR4302535.953395/94‑1 (MQ=60)
CGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCT < SRR4302535.611197/94‑1 (MQ=60)
GGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTG > SRR4302535.234040/1‑94 (MQ=60)
GGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTG > SRR4302535.805777/1‑94 (MQ=60)
GGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTG < SRR4302535.1462415/94‑1 (MQ=60)
GAGCCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGG < SRR4302535.3356859/94‑1 (MQ=60)
AACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGT < SRR4302535.3081510/94‑1 (MQ=60)
AACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGT < SRR4302535.305084/94‑1 (MQ=60)
AACCGTGGTCGCCGCCCAGCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGT < SRR4302535.2109972/94‑1 (MQ=60)
ACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTA > SRR4302535.2960526/1‑94 (MQ=60)
CCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTAT < SRR4302535.3028049/94‑1 (MQ=60)
CCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTAT > SRR4302535.2173046/1‑94 (MQ=60)
GTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTA < SRR4302535.4470265/94‑1 (MQ=60)
GTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTA > SRR4302535.4112859/1‑94 (MQ=60)
GTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTA > SRR4302535.996721/1‑94 (MQ=60)
TGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTAT < SRR4302535.3827850/94‑1 (MQ=60)
GTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTG < SRR4302535.349649/94‑1 (MQ=60)
GCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCG < SRR4302535.2448717/94‑1 (MQ=60)
CCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGC < SRR4302535.1937008/94‑1 (MQ=60)
CCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGCCGAGCGGCAGCATGGGCGTTGTGCTCTCTGGTATTATTGGtcc > SRR4302535.3458163/1‑91 (MQ=60)
CGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCA > SRR4302535.3491324/1‑94 (MQ=60)
CGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCA > SRR4302535.3759829/1‑94 (MQ=60)
GCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAT > SRR4302535.756057/1‑94 (MQ=60)
GCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAT > SRR4302535.706358/1‑94 (MQ=60)
GCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAT > SRR4302535.3021244/1‑94 (MQ=60)
GCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCAT > SRR4302535.1568677/1‑94 (MQ=60)
CCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATT > SRR4302535.494647/1‑94 (MQ=60)
CCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATT > SRR4302535.1153045/1‑94 (MQ=60)
CTATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTG < SRR4302535.948436/94‑1 (MQ=60)
CCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTG < SRR4302535.3822427/94‑1 (MQ=60)
CCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTG < SRR4302535.179464/94‑1 (MQ=60)
CCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTG > SRR4302535.3783001/1‑94 (MQ=60)
CATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGC > SRR4302535.2334687/1‑94 (MQ=60)
ATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCT < SRR4302535.3166386/94‑1 (MQ=60)
ATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCT < SRR4302535.1020136/94‑1 (MQ=60)
CCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTG < SRR4302535.3817644/94‑1 (MQ=60)
CCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTG < SRR4302535.351485/94‑1 (MQ=60)
CTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGG > SRR4302535.3935068/1‑94 (MQ=60)
CTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGG < SRR4302535.271293/94‑1 (MQ=60)
TGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGG < SRR4302535.3439709/94‑1 (MQ=60)
TGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGG < SRR4302535.3210232/94‑1 (MQ=60)
TGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGG < SRR4302535.4651367/94‑1 (MQ=60)
GACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGC > SRR4302535.132399/1‑94 (MQ=60)
GACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGC > SRR4302535.3149219/1‑94 (MQ=60)
GCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAA < SRR4302535.1349315/94‑1 (MQ=60)
GCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAA > SRR4302535.2667835/1‑94 (MQ=60)
TAGGCATTATTGATGCCTGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACT < SRR4302535.1446753/94‑1 (MQ=60)
TAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACT < SRR4302535.4649789/94‑1 (MQ=60)
TAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACT < SRR4302535.640670/94‑1 (MQ=60)
TAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACT < SRR4302535.4130076/94‑1 (MQ=60)
TAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACT > SRR4302535.3065487/1‑94 (MQ=60)
AGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTG < SRR4302535.3785694/94‑1 (MQ=60)
AGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTG > SRR4302535.1976372/1‑94 (MQ=60)
AGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTG > SRR4302535.3291809/1‑94 (MQ=60)
GCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTC > SRR4302535.2351043/1‑94 (MQ=60)
GCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTC < SRR4302535.2913194/94‑1 (MQ=60)
GCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTC > SRR4302535.667171/1‑94 (MQ=60)
CATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCG < SRR4302535.2386615/94‑1 (MQ=60)
CATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCG > SRR4302535.3732794/1‑94 (MQ=60)
CATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCC > SRR4302535.417294/1‑94 (MQ=60)
ATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGC > SRR4302535.2019111/1‑94 (MQ=60)
TTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCC < SRR4302535.3244215/94‑1 (MQ=60)
TGATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTAT < SRR4302535.2178730/94‑1 (MQ=60)
GATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATG < SRR4302535.3650599/94‑1 (MQ=60)
ATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGA < SRR4302535.3293169/94‑1 (MQ=60)
ATGCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGA > SRR4302535.303760/1‑94 (MQ=60)
GCCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATG < SRR4302535.4589605/94‑1 (MQ=60)
CCGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGC < SRR4302535.1710618/94‑1 (MQ=60)
CGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCA < SRR4302535.3539485/94‑1 (MQ=60)
CGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCA > SRR4302535.2878859/1‑94 (MQ=60)
CGGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCA < SRR4302535.1034962/94‑1 (MQ=60)
GGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAG > SRR4302535.3032989/1‑94 (MQ=60)
GGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAG < SRR4302535.4212041/94‑1 (MQ=60)
GGAAATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAG < SRR4302535.1367679/94‑1 (MQ=60)
AATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCT > SRR4302535.709818/1‑94 (MQ=60)
ATGCAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTG < SRR4302535.1885079/94‑1 (MQ=60)
CAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGC < SRR4302535.2576171/94‑1 (MQ=60)
CAGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGC < SRR4302535.1799206/94‑1 (MQ=60)
AGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCA > SRR4302535.780240/1‑94 (MQ=60)
AGGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGGATGATGCAGCCTGTGCA > SRR4302535.4233041/1‑94 (MQ=60)
GGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAG > SRR4302535.799103/1‑94 (MQ=60)
GGCATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAG > SRR4302535.2425023/1‑94 (MQ=60)
CATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGC > SRR4302535.1315867/1‑94 (MQ=60)
CATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGC > SRR4302535.1610860/1‑94 (MQ=60)
ATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCACAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCT > SRR4302535.1840829/1‑94 (MQ=60)
ATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCT < SRR4302535.4631552/94‑1 (MQ=60)
ATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCT < SRR4302535.105071/94‑1 (MQ=60)
ATGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCT < SRR4302535.990334/94‑1 (MQ=60)
TGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTG > SRR4302535.2775080/1‑94 (MQ=60)
TGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTG > SRR4302535.517711/1‑94 (MQ=60)
TGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTG > SRR4302535.2723842/1‑94 (MQ=60)
TGGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGC‑AAAACTCTCGCCGTATGATGCAGCCTGTGCAGGCTGG > SRR4302535.1097129/1‑94 (MQ=60)
GGCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGT < SRR4302535.1070822/94‑1 (MQ=60)
GCGAGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTG < SRR4302535.4139356/94‑1 (MQ=60)
AGCGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCG > SRR4302535.2700944/1‑94 (MQ=60)
CGGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCG < SRR4302535.2128324/94‑1 (MQ=60)
GGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCGC > SRR4302535.4090048/1‑94 (MQ=60)
GGCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCGC < SRR4302535.3665063/94‑1 (MQ=60)
GCAGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCGCA > SRR4302535.4560939/1‑94 (MQ=60)
AGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCGCACG > SRR4302535.2478161/1‑94 (MQ=60)
AGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCGCACG > SRR4302535.787204/1‑94 (MQ=60)
AGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCGCACG < SRR4302535.2383127/94‑1 (MQ=60)
|
GTAGCGGTGCTGAAAGGTGCCGGAACCGTGGTCGCCGCCCATCCTGACGCTTTAGGCATTATTGATGCCGGAAATGCAGGCATGGCGAGCGGCGGCATGGGCGATGTGCTCTCTGGTATTATTGGCGCATTGCTTGGGCAAAAACTGTCGCCGTATGATGCAGCCTGTGCAGGCTGTGTCGCGCACG > NC_000913/4392865‑4393051
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
