Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,423,015 |
A→G |
D107G (GAC→GGC) |
rpsF → |
30S ribosomal subunit protein S6 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,423,015 | 0 | A | G | 99.6%
| 825.7
/ ‑5.2
| 267 | D107G (GAC→GGC) | rpsF | 30S ribosomal subunit protein S6 |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (126/139); total (127/140) |
| Fisher's exact test for biased strand distribution p-value = 4.77e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.00e-01 |
Only 100 of 279 total aligned reads displayed.
CCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGACGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGACCA > NC_000913/4422925‑4423104
|
ccTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCg > 1:2659418/1‑93 (MQ=255)
cTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGa > 1:2481661/1‑93 (MQ=255)
ttCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAg > 1:4623381/1‑93 (MQ=255)
tCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAgc < 1:141660/93‑1 (MQ=255)
cTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCAAGCGCCg > 2:3398976/1‑93 (MQ=255)
ttCAACGATGCTGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGt > 2:2246113/1‑93 (MQ=255)
ttCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGt < 1:1541341/93‑1 (MQ=255)
ttCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGt < 2:3196606/93‑1 (MQ=255)
tCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTg > 1:1209348/1‑93 (MQ=255)
aaCGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAg < 2:3885876/93‑1 (MQ=255)
taTGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGt < 1:339505/92‑1 (MQ=255)
gATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGt > 1:605513/1‑93 (MQ=255)
gATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGt > 1:3201405/1‑93 (MQ=255)
gATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGt > 2:903105/1‑93 (MQ=255)
aTGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTc < 1:938289/93‑1 (MQ=255)
tGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTcg > 1:1025624/1‑93 (MQ=255)
tGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTcg > 1:2429200/1‑93 (MQ=255)
tGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTcg < 1:1466498/93‑1 (MQ=255)
cGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCga < 2:1691348/93‑1 (MQ=255)
cGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCga > 2:4156285/1‑93 (MQ=255)
gTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCgat > 2:4592946/1‑93 (MQ=255)
tATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCgatga > 2:3789489/1‑93 (MQ=255)
tATCCGCAGCATGGTGATGCGTACCAAGCACGCTGTTACCGAAGCAGCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCgatga < 1:3984518/93‑1 (MQ=255)
aTCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCgatgat > 2:1467166/1‑93 (MQ=255)
cGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGTCGAGCGCCGAGAGCGTCGTGAAGActtt > 1:2148010/1‑92 (MQ=255)
cGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTc > 2:2806711/1‑93 (MQ=255)
gcagcaTGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCg > 1:1358379/1‑93 (MQ=255)
caTGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCaaa > 1:164012/1‑93 (MQ=255)
ggTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGa > 1:2007983/1‑93 (MQ=255)
ggTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGa < 1:1764116/93‑1 (MQ=255)
gTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGaa < 2:3495233/93‑1 (MQ=255)
gTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCtg < 2:2459067/93‑1 (MQ=255)
aCCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCtgat < 2:1209245/93‑1 (MQ=255)
cAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCtgatga < 2:2086302/93‑1 (MQ=255)
aaGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTgatgat < 1:3871926/93‑1 (MQ=255)
aaGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTgatgat < 2:444864/93‑1 (MQ=255)
aaGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTgatgat < 2:2545762/93‑1 (MQ=255)
aaGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTgatgat > 2:3655411/1‑93 (MQ=255)
aGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGatgatg > 1:4153967/1‑93 (MQ=255)
gCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGc > 2:2187628/1‑93 (MQ=255)
gCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGc < 1:2824291/93‑1 (MQ=255)
gCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGc > 1:2938869/1‑93 (MQ=255)
cGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGa < 1:482260/93‑1 (MQ=255)
cGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGa < 1:2629533/93‑1 (MQ=255)
cGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGa < 2:3625077/93‑1 (MQ=255)
gCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGaa > 2:4053372/1‑93 (MQ=255)
gCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGaa < 1:3465878/93‑1 (MQ=255)
gCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGaa < 1:1952529/93‑1 (MQ=255)
cTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAACGCGATCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAg > 1:444403/1‑93 (MQ=255)
tGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGc < 2:4490154/93‑1 (MQ=255)
ggtaaCCGACGCATCTCCGATGGTTAAAGCGAACGGCGAGCGCCGTGGGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGc < 2:2723595/89‑1 (MQ=255)
gTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCt > 2:3586139/1‑93 (MQ=255)
gTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCt < 1:3400198/93‑1 (MQ=255)
ttACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTg < 2:110372/93‑1 (MQ=255)
tACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTgg < 2:3313051/93‑1 (MQ=255)
cGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGa > 2:2900730/1‑93 (MQ=255)
cGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGa < 1:1595722/93‑1 (MQ=255)
cGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGa < 2:3214246/93‑1 (MQ=255)
gAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGAt > 1:2205016/1‑93 (MQ=255)
aaGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGAtt < 1:3002508/93‑1 (MQ=255)
aGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTc > 2:2354520/1‑93 (MQ=255)
aGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTc > 1:4241815/1‑93 (MQ=255)
gCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCt > 2:3671024/1‑93 (MQ=255)
aTCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGa > 1:3821405/1‑93 (MQ=255)
tctcCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGaa < 2:3928481/93‑1 (MQ=255)
tctcCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGaa < 1:4047484/93‑1 (MQ=255)
tctcCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGaa > 1:3561685/1‑93 (MQ=255)
tcCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAaga < 2:1793305/93‑1 (MQ=255)
tcCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAaga < 2:870935/93‑1 (MQ=255)
tcCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAaga > 1:771446/1‑93 (MQ=255)
tcCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAaga > 1:738198/1‑93 (MQ=255)
tcCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAaga > 1:3828599/1‑93 (MQ=255)
gcGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAagag < 1:4502285/92‑1 (MQ=255)
ccGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAagag > 2:4105273/1‑93 (MQ=255)
cGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGt > 1:1981998/1‑93 (MQ=255)
cGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGt > 2:4360676/1‑93 (MQ=255)
gATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTa > 2:3730768/1‑93 (MQ=255)
gATGGTTAAAGCGAAAGACGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTa > 2:4668963/1‑93 (MQ=255)
gATAGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTa < 2:2589843/93‑1 (MQ=255)
tGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAt < 2:1902435/93‑1 (MQ=255)
tGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAt < 2:2024243/93‑1 (MQ=255)
ggTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAtt < 2:978041/93‑1 (MQ=255)
ggTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAtt < 2:657397/93‑1 (MQ=255)
ggTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAtt < 1:4359422/93‑1 (MQ=255)
gTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAttt > 2:1508841/1‑93 (MQ=255)
ttAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTc < 1:1837653/93‑1 (MQ=255)
tAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCt < 2:1198333/93‑1 (MQ=255)
tAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCt < 1:4079715/93‑1 (MQ=255)
tAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCt < 2:4505315/93‑1 (MQ=255)
aaGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCtga < 2:177625/93‑1 (MQ=255)
aaGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCtga < 1:2352382/93‑1 (MQ=255)
aaGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCtga < 2:495944/93‑1 (MQ=255)
aGNGAANGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCtgat < 1:1294943/93‑1 (MQ=255)
aGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCtgat < 1:2716206/93‑1 (MQ=255)
cGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCtgatga < 1:4007475/93‑1 (MQ=255)
gAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAc > 1:3663877/1‑93 (MQ=255)
gAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAc < 1:1066923/93‑1 (MQ=255)
gAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAc > 1:1447029/1‑93 (MQ=255)
gAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAc > 2:2865219/1‑93 (MQ=255)
aaGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGACCa > 2:3047893/1‑93 (MQ=255)
|
CCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGACGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGACCA > NC_000913/4422925‑4423104
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGACGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGACC > NC_000913/4422922‑4423103
|
CTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGG < SRR4302535.606171/94‑1 (MQ=60)
TACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGC < SRR4302535.1154923/94‑1 (MQ=60)
TACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGC < SRR4302535.1636728/94‑1 (MQ=60)
TACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGC > SRR4302535.4628503/1‑94 (MQ=60)
TACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGC < SRR4302535.1693141/94‑1 (MQ=60)
ACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCG > SRR4302535.2678469/1‑94 (MQ=60)
ACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCG < SRR4302535.3997991/94‑1 (MQ=60)
CCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGA > SRR4302535.2499553/1‑94 (MQ=60)
CTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAG > SRR4302535.216063/1‑94 (MQ=60)
CTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAG > SRR4302535.1956027/1‑94 (MQ=60)
CTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAG > SRR4302535.4654782/1‑94 (MQ=60)
TCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCG < SRR4302535.142652/94‑1 (MQ=60)
TTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTG < SRR4302535.3554283/94‑1 (MQ=60)
TTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTG < SRR4302535.1552455/94‑1 (MQ=60)
TTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTG > SRR4302535.3938282/1‑94 (MQ=60)
TTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTG > SRR4302535.1218036/1‑94 (MQ=60)
CAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAG > SRR4302535.3977458/1‑94 (MQ=60)
AACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGC > SRR4302535.4478047/1‑94 (MQ=60)
AACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGC > SRR4302535.453582/1‑94 (MQ=60)
ACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCG > SRR4302535.3436095/1‑94 (MQ=60)
CGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGT > SRR4302535.3223571/1‑94 (MQ=60)
CGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGT < SRR4302535.3068676/94‑1 (MQ=60)
CGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGT > SRR4302535.609745/1‑94 (MQ=60)
TATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTC < SRR4302535.341855/94‑1 (MQ=60)
GATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTC > SRR4302535.3000834/1‑94 (MQ=60)
GATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTC < SRR4302535.2083663/94‑1 (MQ=60)
GATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTC < SRR4302535.3598127/94‑1 (MQ=60)
ATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCG > SRR4302535.1032909/1‑94 (MQ=60)
ATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCG > SRR4302535.2446702/1‑94 (MQ=60)
ATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCG < SRR4302535.944935/94‑1 (MQ=60)
TGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGC < SRR4302535.1477004/94‑1 (MQ=60)
TGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGC > SRR4302535.4281792/1‑94 (MQ=60)
GCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCG < SRR4302535.4035010/94‑1 (MQ=60)
CGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGaggt > SRR4302535.478119/1‑90 (MQ=60)
CGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGAT < SRR4302535.3378659/94‑1 (MQ=60)
CGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGAT > SRR4302535.770981/1‑94 (MQ=60)
CGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGAT > SRR4302535.896853/1‑94 (MQ=60)
GTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGCGCGCCGTGAGCGTCGCGATG > SRR4302535.2988817/1‑94 (MQ=60)
GTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATG < SRR4302535.1984063/94‑1 (MQ=60)
GTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATG > SRR4302535.3230189/1‑94 (MQ=60)
TATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGAT < SRR4302535.3864497/94‑1 (MQ=60)
TATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGAT < SRR4302535.4674740/94‑1 (MQ=60)
TATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGAT > SRR4302535.386567/1‑94 (MQ=60)
TATCCGCAGCATGGTGATGCGTACCAAGCACGCTGTTACCGAAGCAGCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGAT < SRR4302535.4011742/94‑1 (MQ=60)
ATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATT > SRR4302535.1052560/1‑94 (MQ=60)
CCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGTCGAGCGCCGAGAGCGTCGtgaagacttt > SRR4302535.2163458/1‑84 (MQ=60)
CCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTC < SRR4302535.4090272/94‑1 (MQ=60)
CGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCG > SRR4302535.1368092/1‑94 (MQ=60)
AGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAA > SRR4302535.2165405/1‑94 (MQ=60)
AGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAA > SRR4302535.3697178/1‑94 (MQ=60)
GCNNNNNTNTNNGNACCAANCNCGNTGNTANCNAAGCATNTNNGATGGTTAAAGCGNANGGCGAGCGCCGNNAGCGTCGCGATGATTTCGCAAA < SRR4302535.691328/94‑1 (MQ=53)
GCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAA > SRR4302535.165157/1‑94 (MQ=60)
TGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGA > SRR4302535.2022446/1‑94 (MQ=60)
GGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAA < SRR4302535.1776901/94‑1 (MQ=60)
GGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAA > SRR4302535.766129/1‑94 (MQ=60)
GTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAA < SRR4302535.4305361/94‑1 (MQ=60)
TATGCGTACCAAGCTCGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACC < SRR4302535.4595815/94‑1 (MQ=60)
TATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACC < SRR4302535.2610190/94‑1 (MQ=60)
CGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTG < SRR4302535.1594542/94‑1 (MQ=60)
CGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTG < SRR4302535.1360591/94‑1 (MQ=60)
CGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTG > SRR4302535.2368893/1‑94 (MQ=60)
GTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGA > SRR4302535.807595/1‑94 (MQ=60)
TACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGAT > SRR4302535.4066241/1‑94 (MQ=60)
ACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATG < SRR4302535.4016134/94‑1 (MQ=60)
CAAGCACGCTGTTACCGAAGCATCTCCGATGTTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGAT < SRR4302535.2457600/94‑1 (MQ=60)
AAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATG > SRR4302535.4182407/1‑94 (MQ=60)
AAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATG < SRR4302535.4112443/94‑1 (MQ=60)
AAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATG < SRR4302535.3898534/94‑1 (MQ=60)
AAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATC > SRR4302535.1581127/1‑94 (MQ=60)
AGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGC < SRR4302535.2808084/94‑1 (MQ=60)
AGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGC > SRR4302535.2959540/1‑94 (MQ=60)
AGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGC > SRR4302535.1083507/1‑94 (MQ=60)
GCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCT < SRR4302535.2844337/94‑1 (MQ=60)
CACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTG < SRR4302535.3478512/94‑1 (MQ=60)
CACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTG < SRR4302535.1751999/94‑1 (MQ=60)
CCGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGA < SRR4302535.3214120/94‑1 (MQ=60)
CGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAA < SRR4302535.485643/94‑1 (MQ=60)
CGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAA < SRR4302535.1112550/94‑1 (MQ=60)
CGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAA < SRR4302535.2648375/94‑1 (MQ=60)
CGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAA > SRR4302535.3419173/1‑94 (MQ=60)
CGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAA < SRR4302535.2648374/94‑1 (MQ=60)
GCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAG < SRR4302535.1966583/94‑1 (MQ=60)
GCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAG < SRR4302535.3489962/94‑1 (MQ=60)
GCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAACGCGATCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAG > SRR4302535.447512/1‑94 (MQ=60)
CTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGC > SRR4302535.1482133/1‑94 (MQ=60)
TGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCT < SRR4302535.951786/94‑1 (MQ=60)
GTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTG < SRR4302535.3423861/94‑1 (MQ=60)
GTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTG < SRR4302535.244146/94‑1 (MQ=60)
GTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTG > SRR4302535.705806/1‑94 (MQ=60)
TACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGG < SRR4302535.423739/94‑1 (MQ=60)
TACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGG < SRR4302535.1940403/94‑1 (MQ=60)
ACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGG < SRR4302535.4011933/94‑1 (MQ=60)
ACCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGG < SRR4302535.2372407/94‑1 (MQ=60)
CCGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGT > SRR4302535.4463725/1‑94 (MQ=60)
CGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGAT > SRR4302535.2220721/1‑94 (MQ=60)
CGAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGAT < SRR4302535.1607229/94‑1 (MQ=60)
CGAAGCATCTCCGATCGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGAT < SRR4302535.582701/94‑1 (MQ=60)
GAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATT > SRR4302535.1353639/1‑94 (MQ=60)
GAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATT < SRR4302535.3799963/94‑1 (MQ=60)
GAAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATT > SRR4302535.4224705/1‑94 (MQ=60)
AAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTC < SRR4302535.3023555/94‑1 (MQ=60)
AAGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTC > SRR4302535.4270846/1‑94 (MQ=60)
AGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTtg > SRR4302535.2957609/1‑92 (MQ=60)
AGCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCT < SRR4302535.1464813/94‑1 (MQ=60)
GCATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTG < SRR4302535.2241030/94‑1 (MQ=60)
CATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGA > SRR4302535.3851396/1‑94 (MQ=60)
CATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGA > SRR4302535.3847769/1‑94 (MQ=60)
ATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAA > SRR4302535.3586381/1‑94 (MQ=60)
ATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAA < SRR4302535.1819076/94‑1 (MQ=60)
ATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAA < SRR4302535.181546/94‑1 (MQ=60)
ATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAA > SRR4302535.1667630/1‑94 (MQ=60)
ATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAA < SRR4302535.1649459/94‑1 (MQ=60)
ATCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAA > SRR4302535.2195960/1‑94 (MQ=60)
TCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAG < SRR4302535.4075190/94‑1 (MQ=60)
TCTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAG < SRR4302535.3573625/94‑1 (MQ=60)
CTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGA > SRR4302535.776876/1‑94 (MQ=60)
CTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGA > SRR4302535.743389/1‑94 (MQ=60)
CTCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGA > SRR4302535.3855007/1‑94 (MQ=60)
TCNGNANGNTAAAGCGAAAGGCNAGCGCCGNGAGCGTCGNGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAG < SRR4302535.1440015/94‑1 (MQ=60)
TCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAG < SRR4302535.1437318/94‑1 (MQ=60)
TCCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAG < SRR4302535.2712581/94‑1 (MQ=60)
GCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGT < SRR4302535.4533202/94‑1 (MQ=60)
CCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGT > SRR4302535.4112900/1‑94 (MQ=60)
CCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGT > SRR4302535.1996268/1‑94 (MQ=60)
CCGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGT < SRR4302535.200863/94‑1 (MQ=60)
CGATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTA < SRR4302535.3591621/94‑1 (MQ=60)
GATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAA > SRR4302535.285127/1‑94 (MQ=60)
ATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGCTTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAT > SRR4302535.627513/1‑94 (MQ=60)
ATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAT > SRR4302535.1423654/1‑94 (MQ=60)
ATGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAAT > SRR4302535.2588565/1‑94 (MQ=60)
TGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATT < SRR4302535.501415/94‑1 (MQ=60)
TGGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATT > SRR4302535.4507647/1‑94 (MQ=60)
GGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTT < SRR4302535.1287469/94‑1 (MQ=60)
GGTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTT < SRR4302535.4389262/94‑1 (MQ=60)
GTTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTC > SRR4302535.1459939/1‑94 (MQ=60)
TTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCT > SRR4302535.2727157/1‑94 (MQ=60)
TTAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCT < SRR4302535.1850912/94‑1 (MQ=60)
TAGAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTG < SRR4302535.1432990/94‑1 (MQ=60)
TAAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTG < SRR4302535.4107621/94‑1 (MQ=60)
AAAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGA > SRR4302535.1974745/1‑94 (MQ=60)
AAGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGAT < SRR4302535.2369246/94‑1 (MQ=60)
AGNGAANGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATG < SRR4302535.1304177/94‑1 (MQ=60)
AGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATG > SRR4302535.2674126/1‑94 (MQ=60)
AGCGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATG < SRR4302535.2735610/94‑1 (MQ=60)
CGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAC > SRR4302535.3689241/1‑94 (MQ=60)
CGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAC < SRR4302535.1237739/94‑1 (MQ=60)
CGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAC < SRR4302535.1534686/94‑1 (MQ=60)
CGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAC < SRR4302535.4034893/94‑1 (MQ=60)
CGAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGAC > SRR4302535.1457378/1‑94 (MQ=60)
GAAAGGCGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGACC < SRR4302535.1074511/94‑1 (MQ=60)
|
CTACCTTCCGCTTCAACGATGCCGTTATCCGCAGCATGGTTATGCGTACCAAGCACGCTGTTACCGAAGCATCTCCGATGGTTAAAGCGAAAGACGAGCGCCGTGAGCGTCGCGATGATTTCGCAAACGAAACCGCTGATGATGCTGAAGCTGGGGATTCTGAAGAGTAATTTCTGATGACC > NC_000913/4422922‑4423103
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
