Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,434,828 |
T→C |
Y166H (TAT→CAT) |
cysQ → |
CysQ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,434,828 | 0 | T | C | 100.0%
| 597.4
/ NA
| 188 | Y166H (TAT→CAT) | cysQ | CysQ |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (92/96); total (92/96) |
Only 100 of 195 total aligned reads displayed.
GCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGTATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTAC > NC_000913/4434739‑4434917
|
gCGGTGTGCGAAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATc < 1:893196/93‑1 (MQ=255)
gggTGTGCGCAAGCAGATGCGGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCt < 1:447881/92‑1 (MQ=255)
ggTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTg > 2:2414644/1‑93 (MQ=255)
gtgtGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGc > 1:519471/1‑93 (MQ=255)
tgtgCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCa > 1:330531/1‑93 (MQ=255)
tgtgCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCa > 1:486567/1‑93 (MQ=255)
gggcgcAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCaa < 2:1536202/91‑1 (MQ=255)
gccgcAAGCAAATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAAc < 1:3954959/91‑1 (MQ=255)
gcgcAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACa < 2:2830029/93‑1 (MQ=255)
gcAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGc < 1:1127814/93‑1 (MQ=255)
gcAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGc < 1:3195840/93‑1 (MQ=255)
gcAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGCGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGCGCATCTGCAACAGc > 2:4297052/1‑93 (MQ=255)
gcAAGCAGATTCAGGTCCGCGAGGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGc < 1:1986517/93‑1 (MQ=255)
gcAAGCAGATTCAGGTCCGCAATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGc < 2:3401758/93‑1 (MQ=255)
gaaaGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGc < 1:1540862/91‑1 (MQ=255)
agaaGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTg < 2:3344757/90‑1 (MQ=255)
accAGATCCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTg < 2:1412757/91‑1 (MQ=255)
aGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTg > 2:4459320/1‑93 (MQ=255)
aGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTg > 2:156008/1‑93 (MQ=255)
gCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTgg > 1:1256839/1‑93 (MQ=255)
gCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTgg > 2:3573421/1‑93 (MQ=255)
gCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTgg > 1:2777204/1‑93 (MQ=255)
cAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGCTCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGc > 1:1513675/1‑93 (MQ=255)
cAGATTCAGCCCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGc < 2:1166675/93‑1 (MQ=255)
gATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGa > 1:3973600/1‑93 (MQ=255)
gATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGa > 2:361200/1‑93 (MQ=255)
gATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGa > 2:1063564/1‑93 (MQ=255)
aTTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGaa > 1:1931974/1‑93 (MQ=255)
tccAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAAc < 2:2481531/91‑1 (MQ=255)
tCAGGTCCGCTATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACa < 1:3891019/93‑1 (MQ=255)
tCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACa < 1:2182508/93‑1 (MQ=255)
aGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATc < 1:2682940/93‑1 (MQ=255)
ggTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCa > 1:743447/1‑93 (MQ=255)
ggTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCa > 2:3992798/1‑93 (MQ=255)
ccGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGAc > 1:2587503/1‑93 (MQ=255)
ccGCGATGCGCCCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGAc < 2:3025475/93‑1 (MQ=255)
ccGAGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGAc < 2:1946528/93‑1 (MQ=255)
ggtGCGCCCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACg < 2:3881334/91‑1 (MQ=255)
gATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACg > 1:1347589/1‑93 (MQ=255)
aTGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACgc > 2:4342721/1‑92 (MQ=255)
tGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTc > 1:2760411/1‑93 (MQ=255)
cgcgcCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCa > 2:1861888/1‑93 (MQ=255)
cgcccgccGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATc < 1:3440331/93‑1 (MQ=255)
cccgccGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCgg < 2:4127122/93‑1 (MQ=255)
ccgccgCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGc < 2:2364872/93‑1 (MQ=255)
ccgccgCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGc < 2:2927911/93‑1 (MQ=255)
cgccgcTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGct < 1:4090912/93‑1 (MQ=255)
gccgcTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGctc < 2:1356956/93‑1 (MQ=255)
gccgcTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGctc < 1:1787893/93‑1 (MQ=255)
gccgcTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTAGCGAACATCAGACCACGTCCATCGGctc > 2:1375974/1‑93 (MQ=255)
ccgcTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACCTCCATCGGctct > 2:1672893/1‑93 (MQ=255)
gcTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTc < 2:450841/93‑1 (MQ=255)
gcTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTc < 2:1918148/93‑1 (MQ=255)
gcTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTc < 1:2782413/93‑1 (MQ=255)
tggtggTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGc > 2:4012331/1‑93 (MQ=255)
tggtggTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGc > 2:4098333/1‑93 (MQ=255)
tggtggTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGc > 1:472260/1‑93 (MQ=255)
gtgATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGaaa > 2:1096055/1‑93 (MQ=255)
tgATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAAt > 2:1993826/1‑93 (MQ=255)
gATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAAtt < 2:3539599/93‑1 (MQ=255)
gATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAAtt < 2:707449/93‑1 (MQ=255)
aTCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTc < 1:3686995/93‑1 (MQ=255)
aTCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCCGCTCTTCGCTGAAATTc > 2:4147430/1‑93 (MQ=255)
cAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTg > 2:224312/1‑93 (MQ=255)
gCCGTTCCCATGCGGATGCGGAGCTGAAAGAACATCTGCAACAGCTTGGCGAACATCAGCCCACGTCCATCGGCTCTTCGCTGAAATTCTGcc < 1:1004908/93‑1 (MQ=255)
cGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCtg > 2:1253824/1‑93 (MQ=255)
ttCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCtggt > 2:459894/1‑93 (MQ=255)
ttCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCtggt > 1:286393/1‑93 (MQ=255)
ttCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCtggt > 2:1724063/1‑93 (MQ=255)
ttCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCtggg > 2:175398/1‑92 (MQ=255)
tCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCtggtg > 1:3158387/1‑93 (MQ=255)
cccATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCtggtgg < 2:3004619/93‑1 (MQ=255)
ccATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGc > 2:1289894/1‑93 (MQ=255)
ccATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGc > 2:2960951/1‑93 (MQ=255)
ccATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGc < 1:133046/93‑1 (MQ=255)
ccATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGc > 2:2167760/1‑93 (MQ=255)
cATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCg > 2:2534436/1‑93 (MQ=255)
cATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCg > 2:1582406/1‑93 (MQ=255)
gcggatgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGaa < 1:2836448/93‑1 (MQ=255)
gcggatgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGaa < 1:1689740/93‑1 (MQ=255)
gcggatgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGaa < 1:302936/93‑1 (MQ=255)
gatgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGa < 1:1067932/93‑1 (MQ=255)
gatgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGa > 1:2996692/1‑93 (MQ=255)
gatgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGa > 1:536304/1‑93 (MQ=255)
gatgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGa > 2:608963/1‑93 (MQ=255)
atgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGAc < 2:3094246/93‑1 (MQ=255)
atgcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGAc < 1:2330619/93‑1 (MQ=255)
gcggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTTGCTGAAATTCTGCCTGGTGGCGGAAGGACAg < 2:3755998/93‑1 (MQ=255)
cggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAgg < 2:3314958/93‑1 (MQ=255)
cggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAgg > 2:53350/1‑93 (MQ=255)
ggaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGgc < 1:3254981/93‑1 (MQ=255)
gcaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGCCCACGTCCATCGGCTCTTCGCTGAAATTTTGCCTGGTGGCGGAAGGACAGgc < 2:3435388/91‑1 (MQ=255)
gaGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGgcg < 1:1426092/93‑1 (MQ=255)
gCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCa > 2:2477003/1‑93 (MQ=255)
gCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGGGGGGGAAGGACAGGCGCa > 2:2631671/1‑93 (MQ=255)
tGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGc < 1:2104473/93‑1 (MQ=255)
gAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCt > 1:1291323/1‑93 (MQ=255)
agagCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTa > 2:2220579/1‑93 (MQ=255)
agagCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTa < 2:2038511/93‑1 (MQ=255)
agagCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGAGGAAGGACAGGCGCAGCTGTa > 1:438247/1‑93 (MQ=255)
|
GCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGTATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTAC > NC_000913/4434739‑4434917
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGTGCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGTATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTACCCGC > NC_000913/4434735‑4434921
|
GAGTGCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGC < SRR4302535.3551003/94‑1 (MQ=60)
GAGTGCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGC > SRR4302535.4244471/1‑94 (MQ=60)
AGTGCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCA > SRR4302535.435525/1‑94 (MQ=60)
AGTGCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCA < SRR4302535.3580308/94‑1 (MQ=60)
AGTGCGGTGTGCGCAAGCAGATTCAGGTCCGCGAGGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCA < SRR4302535.4619778/94‑1 (MQ=60)
GTGCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCAT < SRR4302535.745969/94‑1 (MQ=60)
GCGGTGTGCGAAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCT < SRR4302535.899525/94‑1 (MQ=60)
GCGGTGTGCCCAAGCAGATTCGGCTCCCGGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCT < SRR4302535.1488610/94‑1 (MQ=60)
GGGTGTGCGCAAGCAGATGCGGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTG < SRR4302535.451018/94‑1 (MQ=60)
GGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGC > SRR4302535.523105/1‑94 (MQ=60)
GGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGC > SRR4302535.1101255/1‑94 (MQ=60)
GTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCA > SRR4302535.332822/1‑94 (MQ=60)
GTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCA > SRR4302535.489979/1‑94 (MQ=60)
GTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAAC < SRR4302535.2621750/94‑1 (MQ=60)
GTGCGCAAGCAGATTCAGGCCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAAC < SRR4302535.2060899/94‑1 (MQ=60)
tgcaaAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACA < SRR4302535.410618/89‑1 (MQ=60)
gcCGCAAGCAAATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACA < SRR4302535.3981962/92‑1 (MQ=60)
TGCGCAAGCAGATCCAGGTCCGCGATGCTCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACA < SRR4302535.1295584/94‑1 (MQ=60)
GCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCT < SRR4302535.3217955/94‑1 (MQ=60)
GCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCT < SRR4302535.1135866/94‑1 (MQ=60)
GCAAGCAGATTCAGGTCCGCGAGGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCT < SRR4302535.2000822/94‑1 (MQ=60)
GAAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCT < SRR4302535.1551971/94‑1 (MQ=60)
AGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGG > SRR4302535.1265831/1‑94 (MQ=60)
AGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGG > SRR4302535.2796974/1‑94 (MQ=60)
GCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGCTCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGC > SRR4302535.1524579/1‑94 (MQ=60)
CAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCG > SRR4302535.496700/1‑94 (MQ=60)
AGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGA > SRR4302535.4000742/1‑94 (MQ=60)
GATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAA > SRR4302535.1945895/1‑94 (MQ=60)
TCAGGTCCGCTATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACAT < SRR4302535.3917699/94‑1 (MQ=60)
TCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACAT < SRR4302535.2198071/94‑1 (MQ=60)
CAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATC > SRR4302535.399974/1‑94 (MQ=60)
CAGGTCCGCGATCCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATC < SRR4302535.48694/94‑1 (MQ=60)
AGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCA > SRR4302535.3924681/1‑94 (MQ=60)
AGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCA > SRR4302535.748664/1‑94 (MQ=60)
AGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCA < SRR4302535.2702129/94‑1 (MQ=60)
AGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCA < SRR4302535.4521421/94‑1 (MQ=60)
GGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAG > SRR4302535.3245537/1‑94 (MQ=60)
GTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGA > SRR4302535.701310/1‑94 (MQ=60)
TCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGAC > SRR4302535.2606084/1‑94 (MQ=60)
GCGGTGCGCCCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCAC < SRR4302535.2586379/94‑1 (MQ=60)
CGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACG > SRR4302535.1357208/1‑94 (MQ=60)
ATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTC > SRR4302535.2780081/1‑94 (MQ=60)
TGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCC < SRR4302535.303533/94‑1 (MQ=60)
CGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCAT < SRR4302535.4178442/94‑1 (MQ=60)
CGCCCGCGGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCG < SRR4302535.152769/94‑1 (MQ=60)
CGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCG < SRR4302535.3464255/94‑1 (MQ=60)
CCCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCG < SRR4302535.319780/94‑1 (MQ=60)
CGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTC < SRR4302535.4118904/94‑1 (MQ=60)
GCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCT < SRR4302535.1800828/94‑1 (MQ=60)
GCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCG < SRR4302535.2802218/94‑1 (MQ=60)
CTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGC > SRR4302535.475567/1‑94 (MQ=60)
TGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCT < SRR4302535.3123119/94‑1 (MQ=60)
tgttGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTG < SRR4302535.1238276/90‑1 (MQ=60)
TGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATT > SRR4302535.4473800/1‑94 (MQ=60)
ATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCT > SRR4302535.1379195/1‑94 (MQ=60)
ATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCT < SRR4302535.3712507/94‑1 (MQ=60)
ATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCT < SRR4302535.2786227/94‑1 (MQ=60)
CAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGC > SRR4302535.2165258/1‑94 (MQ=60)
GCCGTTCCCATGCGGATGCGGAGCTGAAAGAACATCTGCAACAGCTTGGCGAACATCAGCCCACGTCCATCGGCTCTTCGCTGAAATTCTGCCT < SRR4302535.1012047/94‑1 (MQ=60)
CGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGG > SRR4302535.130179/1‑94 (MQ=60)
CGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGG > SRR4302535.4046670/1‑94 (MQ=60)
CGTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGG > SRR4302535.2225943/1‑94 (MQ=60)
GTTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGT > SRR4302535.288397/1‑94 (MQ=60)
TTCCCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTG > SRR4302535.3180307/1‑94 (MQ=60)
CCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCG > SRR4302535.901432/1‑94 (MQ=60)
CCATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCG < SRR4302535.133979/94‑1 (MQ=60)
ATGCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGA > SRR4302535.3779030/1‑94 (MQ=60)
GCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAG < SRR4302535.2856577/94‑1 (MQ=60)
GCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAG < SRR4302535.1701970/94‑1 (MQ=60)
GCGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAG < SRR4302535.305042/94‑1 (MQ=60)
CGGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGG > SRR4302535.1869822/1‑94 (MQ=60)
GGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGA > SRR4302535.3017704/1‑94 (MQ=60)
GGATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGA > SRR4302535.540051/1‑94 (MQ=60)
GATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGAC < SRR4302535.1787111/94‑1 (MQ=60)
GATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGAC < SRR4302535.1075527/94‑1 (MQ=60)
ATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACA < SRR4302535.3307178/94‑1 (MQ=60)
ATGCGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACA < SRR4302535.2347288/94‑1 (MQ=60)
CGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGC > SRR4302535.3400765/1‑94 (MQ=60)
CGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGC < SRR4302535.1353293/94‑1 (MQ=60)
CGGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGC < SRR4302535.1670224/94‑1 (MQ=60)
GGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCG < SRR4302535.3277596/94‑1 (MQ=60)
GGAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCG > SRR4302535.1988327/1‑94 (MQ=60)
GAGCTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGC < SRR4302535.1436270/94‑1 (MQ=60)
CTGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGC > SRR4302535.2838102/1‑94 (MQ=60)
TGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCT > SRR4302535.1300527/1‑94 (MQ=60)
TGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCT < SRR4302535.2119648/94‑1 (MQ=60)
TGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCT < SRR4302535.2871133/94‑1 (MQ=60)
TGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCT > SRR4302535.3009652/1‑94 (MQ=60)
TGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCT > SRR4302535.3487567/1‑94 (MQ=60)
TGAAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTCCGCTGAAATTCTGCCTGGGGGCGGAAGGACAGGCGCAGCT > SRR4302535.1524282/1‑94 (MQ=60)
AAAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGT > SRR4302535.2707795/1‑94 (MQ=60)
AAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTA > SRR4302535.8646/1‑94 (MQ=60)
AAGAGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGAGGAAGGACAGGCGCAGCTGTA > SRR4302535.441313/1‑94 (MQ=60)
AGCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTACCC < SRR4302535.1573513/94‑1 (MQ=60)
GCATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTACCCG < SRR4302535.356499/94‑1 (MQ=60)
CATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTACCCGC < SRR4302535.2744337/94‑1 (MQ=60)
CATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTACCCGC > SRR4302535.1168123/1‑94 (MQ=60)
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GAGTGCGGTGTGCGCAAGCAGATTCAGGTCCGCGATGCGCGCCCGCCGCTGGTGGTGATCAGCCGTTCCCATGCGGATGCGGAGCTGAAAGAGTATCTGCAACAGCTTGGCGAACATCAGACCACGTCCATCGGCTCTTCGCTGAAATTCTGCCTGGTGGCGGAAGGACAGGCGCAGCTGTACCCGC > NC_000913/4434735‑4434921
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
