Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,474,826 |
+A |
intergenic (+1/+44) |
yjgL → / ← argI |
hypothetical protein/ornithine carbamoyltransferase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,474,823 | 1 | . | A | 100.0%
| 485.3
/ NA
| 133 | *617K (TAA→AAA) | yjgL | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (94/39); total (94/39) |
Only 100 of 141 total aligned reads displayed.
AATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT > NC_000913/4474733‑4474910
|
aaTGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aa > 1:4202174/1‑93 (MQ=255)
aaTGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aa > 2:4422084/1‑93 (MQ=255)
tGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aaaa > 2:1940986/1‑92 (MQ=255)
tGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aaaa < 1:1883875/93‑2 (MQ=255)
gAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aaaat > 1:3845969/1‑91 (MQ=255)
gAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aaaat > 2:1438667/1‑91 (MQ=255)
aCAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aaaataa > 1:4660487/1‑89 (MQ=255)
gCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAAtgt > 1:3195250/1‑93 (MQ=255)
gCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAAtgt > 1:911726/1‑93 (MQ=255)
gCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAAtgt > 2:4408131/1‑93 (MQ=255)
gCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAAtgt > 2:3659226/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa > 1:2077610/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa > 1:3701567/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa > 1:1239359/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa < 1:19385/93‑1 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa < 1:1170769/93‑1 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGGCCTATCACTGCATAAAATAATGTGAt > 2:3794904/1‑93 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAt > 1:4235568/1‑93 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAt < 2:3849345/93‑1 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAt > 2:4516209/1‑93 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAt > 2:1121119/1‑93 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAt < 2:3116556/93‑1 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGGATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAt > 1:1070353/1‑93 (MQ=255)
taaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCggg > 1:2110197/1‑93 (MQ=255)
taaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCggg > 2:1771206/1‑93 (MQ=255)
taaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCggg < 1:2146860/93‑1 (MQ=255)
aaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGa > 1:2933855/1‑93 (MQ=255)
aaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGa < 2:3932604/93‑1 (MQ=255)
aaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGAt > 2:4332184/1‑93 (MQ=255)
ccACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgta < 2:2986233‑M1/93‑4 (MQ=255)
ccACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgta < 2:3185685‑M1/93‑4 (MQ=255)
cACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtat > 1:4474425‑M1/1‑89 (MQ=255)
cACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtat > 1:894148‑M1/1‑89 (MQ=255)
aCCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatt > 2:2238406‑M1/1‑88 (MQ=255)
ccGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtattt > 2:4482590‑M1/1‑87 (MQ=255)
ggAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcc > 1:1425747‑M1/1‑85 (MQ=255)
ggAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcc > 2:1323879‑M1/1‑85 (MQ=255)
gAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccc > 2:4243506‑M1/1‑84 (MQ=255)
aaaaTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccg < 2:1540049‑M1/93‑11 (MQ=255)
aTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggca > 2:2499401‑M1/1‑80 (MQ=255)
aTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggca < 2:3982757‑M1/93‑14 (MQ=255)
tttACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcat > 2:3707926‑M1/1‑79 (MQ=255)
aCGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt < 1:2219465‑M1/93‑18 (MQ=255)
aCGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt < 1:2774652‑M1/93‑18 (MQ=255)
cGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt > 2:4185529‑M1/1‑75 (MQ=255)
cGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt < 2:153976‑M1/93‑19 (MQ=255)
tataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > 1:2270879‑M1/1‑73 (MQ=255)
tataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > 1:3182610‑M1/1‑73 (MQ=255)
tataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > 2:1837729‑M1/1‑73 (MQ=255)
tataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat < 2:8879‑M1/93‑21 (MQ=255)
ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata > 2:2991770‑M1/1‑72 (MQ=255)
ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata > 2:1965393‑M1/1‑72 (MQ=255)
ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata < 2:2066895‑M1/93‑22 (MQ=255)
taGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag > 1:2737823‑M1/1‑71 (MQ=255)
aGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc > 1:1676271‑M1/1‑70 (MQ=255)
gCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcg > 1:1134889‑M1/1‑69 (MQ=255)
gCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACCGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcg > 2:1580292‑M1/1‑69 (MQ=255)
gaatAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcga < 1:2254500‑M1/92‑26 (MQ=255)
cAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcga > 2:3658637‑M1/1‑68 (MQ=255)
aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat < 2:972726‑M1/93‑27 (MQ=255)
tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag < 2:826165‑M1/93‑29 (MQ=255)
gAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > 2:2483862‑M1/1‑63 (MQ=255)
gAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > 1:644844‑M1/1‑63 (MQ=255)
gAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > 1:180411‑M1/1‑63 (MQ=255)
gAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca < 2:3267609‑M1/93‑31 (MQ=255)
gAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGCGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > 1:4331591‑M1/1‑63 (MQ=255)
aaCACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaa > 2:2780875‑M1/1‑62 (MQ=255)
acacTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > 2:4057134‑M1/1‑61 (MQ=255)
acTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta > 1:4228579‑M1/1‑59 (MQ=255)
tttGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTggatttcccggcatctttatagcgatagcaattatt > 1:1810042‑M1/1‑57 (MQ=255)
tGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattta < 1:2450993‑M1/93‑39 (MQ=255)
tGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGGTTgtatttcccggcatctttatagcgatagcaattattta > 2:2564435‑M1/1‑55 (MQ=255)
ggTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact > 2:3437744‑M1/1‑53 (MQ=255)
tGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga < 2:235544‑M1/93‑43 (MQ=255)
ggAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag > 1:4381195‑M1/1‑50 (MQ=255)
gaagaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagt < 1:2220152‑M1/93‑45 (MQ=255)
gaagaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagt > 1:109183‑M1/1‑49 (MQ=255)
agaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgt > 2:3506969‑M1/1‑47 (MQ=255)
agaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgt > 1:1735279‑M1/1‑47 (MQ=255)
agaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgt < 2:3698694‑M1/93‑47 (MQ=255)
gaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc < 2:236800‑M1/93‑48 (MQ=255)
gaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc < 2:2510969‑M1/93‑48 (MQ=255)
gaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc > 2:2889571‑M1/1‑46 (MQ=255)
gaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc > 2:126941‑M1/1‑46 (MQ=255)
gaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc > 2:3291608‑M1/1‑46 (MQ=255)
aTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgc > 1:2937785‑M1/1‑44 (MQ=255)
aTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgc < 2:3470619‑M1/93‑50 (MQ=255)
aTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGGTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgc > 2:2760704‑M1/1‑44 (MQ=255)
tAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcg > 2:1494802‑M1/1‑43 (MQ=255)
aCCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgacc > 2:1878491‑M1/1‑40 (MQ=255)
cTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccat > 1:4642013‑M1/1‑38 (MQ=255)
tATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatc > 2:327715‑M1/1‑37 (MQ=255)
tATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatc < 2:4607469‑M1/93‑57 (MQ=255)
aTCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatca < 1:2453552‑M1/93‑58 (MQ=255)
cACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatcacc > 2:4380151‑M1/1‑34 (MQ=255)
aCTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatcaccg > 1:682287‑M1/1‑33 (MQ=255)
aCTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatcaccg < 2:2902582‑M1/93‑61 (MQ=255)
cTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatcaccgc > 1:2602574‑M1/1‑32 (MQ=255)
cTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatcaccgc < 1:1571763‑M1/93‑62 (MQ=255)
tGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatcaccgct > 1:3088476‑M1/1‑31 (MQ=255)
|
AATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT > NC_000913/4474733‑4474910
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA > NC_000913/4474735‑4474909
|
TGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAAat > SRR4302535.3872449/1‑92 (MQ=60)
TGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAAat < SRR4302535.1897454/94‑3 (MQ=60)
AACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAA > SRR4302535.4692009/1‑94 (MQ=60)
AGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGT > SRR4302535.117841/1‑94 (MQ=60)
AGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGT > SRR4302535.918209/1‑94 (MQ=60)
AGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGT > SRR4302535.3217360/1‑94 (MQ=60)
CGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGA > SRR4302535.3727204/1‑94 (MQ=60)
CGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGA > SRR4302535.1248206/1‑94 (MQ=60)
CGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGA > SRR4302535.2092577/1‑94 (MQ=60)
GTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAT < SRR4302535.1179130/94‑1 (MQ=60)
GTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAT < SRR4302535.19529/94‑1 (MQ=60)
GTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAT > SRR4302535.4264557/1‑94 (MQ=60)
GTTTAAATAAACTAAATCCACCGGAAAATTTACGGATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAT > SRR4302535.1077963/1‑94 (MQ=60)
TAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCC > SRR4302535.1718297/1‑94 (MQ=60)
AAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTCGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCG > SRR4302535.792067/1‑94 (MQ=60)
ATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGG > SRR4302535.2125418/1‑94 (MQ=60)
TAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGA > SRR4302535.2954503/1‑94 (MQ=60)
TAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGA < SRR4302535.2162302/94‑1 (MQ=60)
AAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGAT > SRR4302535.2296532/1‑94 (MQ=60)
AACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATG < SRR4302535.2034460/94‑1 (MQ=60)
CCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtat > SRR4302535.900487/1‑90 (MQ=60)
CCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtat > SRR4302535.4505126/1‑90 (MQ=60)
CGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcc > SRR4302535.1435924/1‑86 (MQ=60)
GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccc > SRR4302535.3506324/1‑85 (MQ=60)
TACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt > SRR4302535.1375994/1‑77 (MQ=60)
ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt < SRR4302535.2235255/94‑19 (MQ=60)
ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt < SRR4302535.2794405/94‑19 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > SRR4302535.2287071/1‑74 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > SRR4302535.3204602/1‑74 (MQ=60)
ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag > SRR4302535.2757351/1‑72 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc > SRR4302535.1688411/1‑71 (MQ=60)
AGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcg > SRR4302535.1142986/1‑70 (MQ=60)
GAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat < SRR4302535.2270553/94‑27 (MQ=60)
AATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata > SRR4302535.953092/1‑67 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > SRR4302535.302242/1‑64 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > SRR4302535.649343/1‑64 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > SRR4302535.181666/1‑64 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGCGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > SRR4302535.4361214/1‑64 (MQ=60)
AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcact > SRR4302535.4358003/1‑62 (MQ=60)
CACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta > SRR4302535.4257517/1‑60 (MQ=60)
CTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt > SRR4302535.4084121/1‑58 (MQ=60)
CTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTggatttcccggcatctttatagcgatagcaattatt > SRR4302535.1823135/1‑58 (MQ=60)
TGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttac < SRR4302535.2468658/94‑40 (MQ=60)
GGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactg < SRR4302535.2936663/94‑42 (MQ=60)
TGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag > SRR4302535.4411170/1‑51 (MQ=60)
GGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagt > SRR4302535.109954/1‑50 (MQ=60)
GAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtg < SRR4302535.2235951/94‑46 (MQ=60)
AAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgt > SRR4302535.1822293/1‑48 (MQ=60)
AAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgt > SRR4302535.1747824/1‑48 (MQ=60)
AATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgc > SRR4302535.2958452/1‑45 (MQ=60)
CCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCAT > SRR4302535.4673479/1‑94 (MQ=18)
CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302535.256948/1‑94 (MQ=16)
CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302535.608446/1‑94 (MQ=16)
CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT > SRR4302535.3109987/1‑94 (MQ=16)
CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT < SRR4302535.1583109/94‑1 (MQ=16)
CATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTG < SRR4302535.3310029/94‑1 (MQ=21)
taAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGAT < SRR4302535.2479488/92‑1 (MQ=25)
A‑AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATA > SRR4302535.1351298/1‑94 (MQ=26)
AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG > SRR4302535.1228544/1‑94 (MQ=28)
AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT > SRR4302535.51271/1‑94 (MQ=28)
ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTA < SRR4302535.358320/94‑1 (MQ=28)
|
TGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA > NC_000913/4474735‑4474909
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
