Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,478,503 |
(A)7→6 |
intergenic (+12/+47) |
yjgN → / ← valS |
hypothetical protein/valine tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,478,497 | 0 | A | . | 99.4%
| 779.8
/ ‑2.8
| 171 | intergenic (+6/+53) | yjgN/valS | hypothetical protein/valine tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (97/73); total (98/73) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.89e-01 |
Only 100 of 205 total aligned reads displayed.
CCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCCGGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTT > NC_000913/4478405‑4478587
|
ccttTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATa < 1:4014248/93‑1 (MQ=255)
ccttTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATa < 2:1227624/93‑1 (MQ=255)
cttTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaa > 1:4123085/1‑93 (MQ=255)
tttAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaa > 1:3971359/1‑93 (MQ=255)
tttAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaa > 2:4313934/1‑93 (MQ=255)
ttAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTATCCAGAATTTCACGGGGAGTTATGCCTTCTTTACCATTTTTGTAAGAGATaaaa > 1:1222108/1‑93 (MQ=255)
aaTCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaaaaa > 2:3574935/1‑93 (MQ=255)
aTCAATAAAGAAGAACAACCAGGTAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaaaaag < 2:1303904/93‑2 (MQ=255)
aTCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaaaaag < 2:4134941/93‑2 (MQ=255)
tCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaaaaagg < 1:2666689/93‑3 (MQ=255)
acAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaaaaagg < 1:4385575/92‑3 (MQ=255)
cAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaaaaaggc < 2:2456817/93‑4 (MQ=255)
aaaGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGa > 2:942986/1‑93 (MQ=255)
aaaGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGa < 2:1669851/93‑1 (MQ=255)
aagaagAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGag > 1:1344241/1‑92 (MQ=255)
gaagaaCAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGagca > 1:2280072/1‑90 (MQ=255)
gaagaaCAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGagca < 1:190205/93‑4 (MQ=255)
aagaaCAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGagcat < 2:4337953/93‑5 (MQ=255)
aagaaCAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGagcat > 1:2954892/1‑89 (MQ=255)
agaaCAACGAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGga‑gcatg > 2:4568834/1‑93 (MQ=255)
agaaCAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGga‑gcatg > 2:3129076/1‑93 (MQ=255)
agaaCAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGga‑gcatg > 2:2255149/1‑93 (MQ=255)
gaaCAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGga‑gcatgc > 1:3686164/1‑93 (MQ=255)
acaacCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GGATGCTc > 2:3203855/1‑93 (MQ=255)
caacCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTcc > 1:1472534/1‑93 (MQ=255)
aacCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCg > 1:4674972/1‑93 (MQ=255)
cAGATAAAGGCTTCTTAGCCATTTTTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGcc < 2:1116357/93‑1 (MQ=255)
cAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGA‑CAAAAAAGGCCGGA‑GCATGCTcccgac > 1:315815/1‑89 (MQ=255)
aGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCt > 2:2129647/1‑93 (MQ=255)
aGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTACGGCCt > 1:2036334/1‑93 (MQ=255)
taTAAAGCCTTCTTAGCCGGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCtt < 2:1072302/92‑1 (MQ=255)
gATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCtt > 2:614923/1‑93 (MQ=255)
tgaaGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCttcg > 2:3735870/3‑91 (MQ=255)
tAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCttcg > 1:2750387/1‑91 (MQ=255)
aaGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCCTTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCCTGCTCCGGACttcgtt > 2:1882935/1‑89 (MQ=255)
aGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGttt > 1:2315974/1‑93 (MQ=255)
gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGGCGGA‑GCATGGTCCGGGCTTCGGtttc > 2:57924/1‑92 (MQ=255)
cttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtca < 2:1323023/93‑1 (MQ=255)
cttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtca < 1:440560/93‑1 (MQ=255)
tcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatc > 1:1069322/1‑93 (MQ=255)
tcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatc < 1:1757267/93‑1 (MQ=255)
tcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATATCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatc > 1:3304912/1‑93 (MQ=255)
cttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatca > 1:4189104/1‑93 (MQ=255)
cttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatca < 1:2381085/93‑1 (MQ=255)
ttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCAc > 1:2193886/1‑93 (MQ=255)
ttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCAc < 2:667222/93‑1 (MQ=255)
aGCCAGTATTTCACGGGGAGTTATGCCTTCTTTCCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtg < 1:3259609/93‑1 (MQ=255)
aGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtg < 1:702166/93‑1 (MQ=255)
gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgt > 1:491970/1‑93 (MQ=255)
gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgt > 1:3803292/1‑93 (MQ=255)
gcAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgtg < 2:332871/92‑1 (MQ=255)
cAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCAGGA‑GCATGCTCCGGGCCT‑CGTTTTCATCACTgtgt > 1:2149751/1‑93 (MQ=255)
gTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGttt > 1:1852107/1‑93 (MQ=255)
tATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGtttt < 1:4651192/93‑1 (MQ=255)
tATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGtttt > 2:2521434/1‑93 (MQ=255)
tATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGtttt > 1:81731/1‑93 (MQ=255)
aTTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGCT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTg > 1:1150528/1‑93 (MQ=255)
aTTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTg > 2:3837436/1‑93 (MQ=255)
tttCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGa < 1:2798734/93‑1 (MQ=255)
ttCACGGGGAGTTATGCCTTCTTTGCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGAt < 1:1121481/93‑1 (MQ=255)
ttCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGAt < 2:1613528/93‑1 (MQ=255)
cACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTa < 1:3640379/93‑1 (MQ=255)
aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTAc > 1:3141708/1‑93 (MQ=255)
aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTAc < 2:867238/93‑1 (MQ=255)
cGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACa < 1:461639/93‑1 (MQ=255)
gggAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAgc < 2:2396714/93‑1 (MQ=255)
gggAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAgc < 1:3930885/93‑1 (MQ=255)
gggAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAgc < 2:3416728/93‑1 (MQ=255)
gAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAgcgc < 1:587125/93‑1 (MQ=255)
gTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCgcgg > 1:3500262/1‑93 (MQ=255)
tATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCgcggcg > 2:2904347/1‑93 (MQ=255)
aTGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa > 2:1751663/1‑93 (MQ=255)
aTGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa < 2:721000/93‑1 (MQ=255)
ccTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATaa < 2:3303099/93‑1 (MQ=255)
cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCCGG‑‑GGATGCTCCCGCCTTCCGTTTTC‑TTACTGTGGTTTTATTTTAGCGCGGGGATaaa > 1:51177/1‑92 (MQ=255)
cttcttTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAAc < 1:4142926/93‑1 (MQ=255)
ttcttTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑TGTTTTCATCACTGTGTTTTGATTACAGTGCGGTGATAACa > 1:94894/1‑93 (MQ=255)
ttcttTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCCTCACTGTGTTTTTATTACAGCGCGGCGGTcaca > 2:178648/1‑93 (MQ=255)
ttcttTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACa < 2:4242615/93‑1 (MQ=255)
ttACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCct > 2:2176350/1‑93 (MQ=255)
ttACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCct < 2:4392367/93‑1 (MQ=255)
ttACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCct < 2:3605205/93‑1 (MQ=255)
ttACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGCGTTTTGATTACAGCGCGGCGATAACAGCct > 2:1406259/1‑93 (MQ=255)
tccATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgc < 1:1561721/92‑1 (MQ=255)
aCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgc > 1:3457271/1‑93 (MQ=255)
ccATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgct < 1:2616832/93‑1 (MQ=255)
cATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgctg < 2:3612303/93‑1 (MQ=255)
aTTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGt < 2:4038368/93‑1 (MQ=255)
aTTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGt > 1:1256239/1‑93 (MQ=255)
tCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCa < 2:2642774/93‑1 (MQ=255)
tCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCa > 1:4302025/1‑93 (MQ=255)
tGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTCCAGCGCGGCGATAACAGCCTGCTGTTCAAt > 2:472711/1‑93 (MQ=255)
tGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAAt < 1:1462589/93‑1 (MQ=255)
tAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCa > 1:3602236/1‑93 (MQ=255)
aaGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAg < 1:3098049/93‑1 (MQ=255)
agagAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGt > 1:1203266/1‑93 (MQ=255)
agagAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGt < 2:834421/93‑1 (MQ=255)
agagAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGt > 1:1050169/1‑93 (MQ=255)
gagaT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtt > 2:1447300/1‑93 (MQ=255)
gagaT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtt > 1:2861941/1‑93 (MQ=255)
|
CCTTTAATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCCGGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTT > NC_000913/4478405‑4478587
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCC‑GGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCG > NC_000913/4478410‑4478596
|
AATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAG < SRR4302535.2855854/94‑1 (MQ=60)
ATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGG > SRR4302535.529482/1‑94 (MQ=60)
ATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGG < SRR4302535.2582613/94‑1 (MQ=60)
TCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGC < SRR4302535.2685778/94‑1 (MQ=60)
TCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGC < SRR4302535.2291956/94‑1 (MQ=60)
ACAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGC < SRR4302535.4415577/94‑1 (MQ=60)
CAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCC < SRR4302535.3605667/94‑1 (MQ=60)
ATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGG > SRR4302535.1123221/1‑94 (MQ=60)
ATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGG < SRR4302535.118815/94‑1 (MQ=60)
TAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA < SRR4302535.4497166/94‑1 (MQ=60)
AAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGAG > SRR4302535.1353838/1‑94 (MQ=60)
AGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCA > SRR4302535.2296357/1‑94 (MQ=60)
AGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCA < SRR4302535.3165276/94‑1 (MQ=60)
GAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCAT < SRR4302535.191518/94‑1 (MQ=60)
GAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCAT > SRR4302535.3192954/1‑94 (MQ=60)
GAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCAT > SRR4302535.2975646/1‑94 (MQ=60)
AAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATG > SRR4302535.2138685/1‑94 (MQ=60)
AGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGC > SRR4302535.3711666/1‑94 (MQ=60)
GAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCT < SRR4302535.3430730/94‑1 (MQ=60)
GAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCT < SRR4302535.4117033/94‑1 (MQ=60)
ACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC > SRR4302535.1483076/1‑94 (MQ=60)
CAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑G > SRR4302535.4706532/1‑94 (MQ=60)
CAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑G > SRR4302535.1216368/1‑94 (MQ=60)
CCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGA‑CAAAAAAGGCCGGA‑GCATGCTCCcgac > SRR4302535.318004/1‑90 (MQ=60)
CAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCT > SRR4302535.1067112/1‑94 (MQ=60)
CAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTAC‑GGCCT > SRR4302535.2051000/1‑94 (MQ=60)
GATAAAGGGTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTTC > SRR4302535.1302401/1‑94 (MQ=60)
ATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTTcg > SRR4302535.2769994/1‑92 (MQ=60)
ATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTTcg < SRR4302535.1880151/94‑3 (MQ=60)
AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTT < SRR4302535.81488/94‑1 (MQ=60)
AAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTT < SRR4302535.4426257/94‑1 (MQ=60)
AAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTT > SRR4302535.2332545/1‑94 (MQ=60)
AGGCTTCTTAGCCAGTATTTCACGGTGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTT < SRR4302535.4663791/94‑1 (MQ=60)
AGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTT > SRR4302535.2167230/1‑94 (MQ=60)
GGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTTcgtttta > SRR4302535.1828265/1‑87 (MQ=60)
GGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTC > SRR4302535.1476261/1‑94 (MQ=60)
CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCAT < SRR4302535.443644/94‑1 (MQ=60)
CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCAT > SRR4302535.3959107/1‑94 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC > SRR4302535.514361/1‑94 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC > SRR4302535.3905681/1‑94 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC < SRR4302535.3699355/94‑1 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC > SRR4302535.1076923/1‑94 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATATCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC > SRR4302535.3327904/1‑94 (MQ=60)
TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCA > SRR4302535.4217778/1‑94 (MQ=60)
TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCA < SRR4302535.1769969/94‑1 (MQ=60)
CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCAC < SRR4302535.2398184/94‑1 (MQ=60)
CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCAC > SRR4302535.2209520/1‑94 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTCCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT < SRR4302535.3282264/94‑1 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT < SRR4302535.707089/94‑1 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT > SRR4302535.2954406/1‑94 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT > SRR4302535.495418/1‑94 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT > SRR4302535.3829511/1‑94 (MQ=60)
GCGAGTATTGCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTG < SRR4302535.3313664/94‑1 (MQ=60)
GCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTG < SRR4302535.160308/94‑1 (MQ=60)
CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCAGGA‑GCATGCTCCGGGCCT‑‑CGTTTTCATCACTGTGT > SRR4302535.2165212/1‑94 (MQ=60)
CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTT > SRR4302535.3060981/1‑94 (MQ=60)
AGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTT > SRR4302535.1865452/1‑94 (MQ=60)
GTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTT > SRR4302535.82312/1‑94 (MQ=60)
TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGCT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTG > SRR4302535.1158747/1‑94 (MQ=60)
TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTG > SRR4302535.4304096/1‑94 (MQ=60)
TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTG < SRR4302535.4682687/94‑1 (MQ=60)
TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTG > SRR4302535.137829/1‑94 (MQ=60)
TTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGAT < SRR4302535.2818650/94‑1 (MQ=60)
TTCACGGGGAGTTATGCCTTCTTTGCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATT < SRR4302535.1129480/94‑1 (MQ=60)
CACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTAC > SRR4302535.3163568/1‑94 (MQ=60)
CACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTAC < SRR4302535.3665598/94‑1 (MQ=60)
CGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAG < SRR4302535.464864/94‑1 (MQ=60)
CGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAG < SRR4302535.2791543/94‑1 (MQ=60)
GGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGC > SRR4302535.2341494/1‑94 (MQ=60)
GGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCG < SRR4302535.3957725/94‑1 (MQ=60)
GAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCG < SRR4302535.591238/94‑1 (MQ=60)
AGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGG > SRR4302535.3524597/1‑94 (MQ=60)
AGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGACTACAGAGCGG > SRR4302535.3788710/1‑94 (MQ=60)
GTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGC > SRR4302535.486942/1‑94 (MQ=60)
TTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCG < SRR4302535.2412129/94‑1 (MQ=60)
TGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATA > SRR4302535.4694840/1‑94 (MQ=60)
TGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATA > SRR4302535.2656550/1‑94 (MQ=60)
GCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAA > SRR4302535.2307628/1‑94 (MQ=60)
CCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAAC < SRR4302535.4188708/94‑1 (MQ=60)
CTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑TGTTTTCATCACTGTGTTTTGATTACAGTGCGGTGATAACA > SRR4302535.95571/1‑94 (MQ=60)
CTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACA < SRR4302535.4171293/94‑1 (MQ=60)
CTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACA < SRR4302535.3160782/94‑1 (MQ=60)
TTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT < SRR4302535.4369837/94‑1 (MQ=60)
TACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGC > SRR4302535.3481306/1‑94 (MQ=60)
TCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCT < SRR4302535.1572975/94‑1 (MQ=60)
CCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTG < SRR4302535.2635592/94‑1 (MQ=60)
CATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT > SRR4302535.1265224/1‑94 (MQ=60)
CATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT < SRR4302535.1236032/94‑1 (MQ=60)
CATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT > SRR4302535.1565490/1‑94 (MQ=60)
TTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCA > SRR4302535.4331457/1‑94 (MQ=60)
TTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCA < SRR4302535.4088277/94‑1 (MQ=60)
TGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATC < SRR4302535.1473066/94‑1 (MQ=60)
GTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA > SRR4302535.3627233/1‑94 (MQ=60)
GTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA > SRR4302535.1137612/1‑94 (MQ=60)
GTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA < SRR4302535.3521284/94‑1 (MQ=60)
TAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAG < SRR4302535.2727892/94‑1 (MQ=60)
AAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGT > SRR4302535.1057637/1‑94 (MQ=60)
AAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGT < SRR4302535.3119621/94‑1 (MQ=60)
AAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGT > SRR4302535.1211903/1‑94 (MQ=60)
AGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTTAATCAGTT > SRR4302535.907688/1‑94 (MQ=60)
AGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTT > SRR4302535.2882215/1‑94 (MQ=60)
GAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTT < SRR4302535.3663969/94‑1 (MQ=60)
AGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGCTAACAGCCTGCTGTTCAATCAGTTTC > SRR4302535.1700013/1‑94 (MQ=60)
AGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTC < SRR4302535.2926495/94‑1 (MQ=60)
AGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTC > SRR4302535.85957/1‑94 (MQ=60)
GAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCG > SRR4302535.1612447/1‑94 (MQ=60)
AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTT > SRR4302535.3204033/1‑94 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTTGCTTT > SRR4302535.3968502/1‑94 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT < SRR4302535.136780/94‑1 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT > SRR4302535.2023387/1‑94 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT > SRR4302535.1369881/1‑94 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT < SRR4302535.4237430/94‑1 (MQ=60)
AAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTC > SRR4302535.2355033/1‑94 (MQ=60)
AAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCG > SRR4302535.3533947/1‑94 (MQ=60)
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AATCAATAAAGAAGAACAACCAGATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCC‑GGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCG > NC_000913/4478410‑4478596
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
