Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,513,662	A→G	V195A (GTC→GCC)	fecA ←	FecA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,513,662	0	A	G	100.0%	453.4 / NA	145	V195A (GTC→GCC)	fecA	FecA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (70/75); total (70/75)

Only 100 of 153 total aligned reads displayed.

ATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGACGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCGGC  >  NC_000913/4513572‑4513751

aTGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCg                                                                                          >  1:2466930/1‑93 (MQ=255)

 tGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCgg                                                                                         <  2:1076367/93‑1 (MQ=255)

 tGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCgg                                                                                         <  2:2357063/93‑1 (MQ=255)

  ggCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGt                                                                                        <  1:4512620/93‑1 (MQ=255)

  ggCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGt                                                                                        <  1:4595369/93‑1 (MQ=255)

   gCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTc                                                                                       >  1:3526875/1‑93 (MQ=255)

    cATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGCCGGGGATGCCGTCCATCAGGGCGGTCg                                                                                      >  1:568164/1‑93 (MQ=255)

     aTCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGa                                                                                     >  1:4361125/1‑93 (MQ=255)

     aTCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGa                                                                                     <  2:2711569/93‑1 (MQ=255)

     aTCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGa                                                                                     <  1:1425319/93‑1 (MQ=255)

      tCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAg                                                                                    >  1:372772/1‑93 (MQ=255)

      tCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAg                                                                                    >  1:1765714/1‑93 (MQ=255)

      tCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAg                                                                                    >  1:960664/1‑93 (MQ=255)

      tCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAg                                                                                    >  1:2192879/1‑93 (MQ=255)

       ccATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGc                                                                                   <  2:2339864/93‑1 (MQ=255)

       ccATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGc                                                                                   <  1:901235/93‑1 (MQ=255)

        cATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCg                                                                                  >  1:1365436/1‑93 (MQ=255)

        cATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCg                                                                                  >  2:3046672/1‑93 (MQ=255)

         aTGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTCAGGGGCGAAGGGGACGGGGCTGCCGTCCCTCAGGGCGGTCGAGCgg                                                                                 >  1:3991021/1‑93 (MQ=255)

         aTGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCgg                                                                                 >  1:2403567/1‑93 (MQ=255)

           gTTGCGGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCt                                                                               <  2:493500/93‑1 (MQ=255)

            ttGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCTAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTg                                                                              <  1:1254484/93‑1 (MQ=255)

              gCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGCAGGGGATGCGGTCCACCCGGGCGGTCGAGCGGCTggg                                                                            >  1:3877411/1‑92 (MQ=255)

               ccGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCg                                                                           <  2:2892125/93‑1 (MQ=255)

                cGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCgg                                                                          >  1:1366304/1‑92 (MQ=255)

                cGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGa                                                                          <  1:907605/93‑1 (MQ=255)

                 gAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCggg                                                                         >  2:39650/1‑91 (MQ=255)

                 gAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAg                                                                         <  2:1522137/93‑1 (MQ=255)

                 gAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAg                                                                         <  1:1123887/93‑1 (MQ=255)

                   gCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGGGAGgc                                                                       >  2:4270442/1‑93 (MQ=255)

                   gCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAggg                                                                       >  2:134511/1‑92 (MQ=255)

                    cGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGgc‑g                                                                     <  1:2478308/93‑1 (MQ=255)

                      aaaCGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGc‑gcg                                                                   >  1:3195651/1‑93 (MQ=255)

                      aaaCGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGc‑gcg                                                                   <  1:2413970/93‑1 (MQ=255)

                        aCGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCggg                                                                 >  2:889737/1‑93 (MQ=255)

                         cGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGt                                                                <  1:2302973/93‑1 (MQ=255)

                         cGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGt                                                                <  2:1129619/93‑1 (MQ=255)

                         cGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGt                                                                >  2:4447457/1‑93 (MQ=255)

                           ggAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTc                                                              <  2:2535772/93‑1 (MQ=255)

                            gAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCa                                                             <  2:3307774/93‑1 (MQ=255)

                              gCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCacg                                                           >  1:2285149/1‑91 (MQ=255)

                              gCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGAAGGGGATGCCGTCCCTCAGGGCCGTCGAGGGGCTGGCGGGGCGGCGGGTGCAg                                                            >  1:816532/1‑93 (MQ=255)

                                cAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGcc                                                         >  1:868213/1‑93 (MQ=255)

                                 aGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGgcc                                                        >  1:2824137/1‑93 (MQ=255)

                                 aGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGccc                                                        >  1:986519/1‑93 (MQ=255)

                                 aGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGccc                                                        <  1:2244193/93‑1 (MQ=255)

                                 aGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAGGccc                                                        >  1:3413656/1‑93 (MQ=255)

                                  gTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGcccc                                                       <  2:1807068/93‑1 (MQ=255)

                                  gTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGcccc                                                       >  1:2805303/1‑93 (MQ=255)

                                   tGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCg                                                      <  2:3341458/93‑1 (MQ=255)

                                     aaaGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGTGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGa                                                    <  2:2861248/93‑1 (MQ=255)

                                     aaaGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGGCCCGGa                                                    >  2:742609/1‑93 (MQ=255)

                                      aaGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGAt                                                   <  1:467785/93‑1 (MQ=255)

                                       aGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCGGGATg                                                  >  2:2302211/1‑93 (MQ=255)

                                         cTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGcc                                                <  1:3506924/93‑1 (MQ=255)

                                             ggCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAGGGCCCGGATGCCAAAg                                            >  1:1687360/1‑93 (MQ=255)

                                              gCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGt                                           <  2:2730629/93‑1 (MQ=255)

                                              gCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGt                                           >  2:3076722/1‑93 (MQ=255)

                                               cTGACCGTAAGGGGCGAAGGTGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGtt                                          <  2:96563/93‑1 (MQ=255)

                                                tGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTc                                         <  1:1852933/93‑1 (MQ=255)

                                                 gACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGGCCCGGATGGCAAAGTTCa                                        >  1:3734243/1‑93 (MQ=255)

                                                    cGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCg                                     <  1:4453706/93‑1 (MQ=255)

                                                     gTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGc                                    >  1:1277440/1‑93 (MQ=255)

                                                      tAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGcc                                   <  1:1834838/93‑1 (MQ=255)

                                                       aaGGGGCGAAGGGGACGGGTATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCa                                  <  1:4118594/93‑1 (MQ=255)

                                                       aaGGGGCGAAGGGAACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCa                                  <  2:1826303/93‑1 (MQ=255)

                                                         ggggCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAAGC‑GCGGGTTCAGGACCCGGATGCCAAAGTTCATCGCCatg                                >  2:1109525/1‑91 (MQ=255)

                                                          gggCGAAGGGGACTGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGt                               <  1:2676033/93‑1 (MQ=255)

                                                           ggCGAAGGGGACGGGGATGCCGTCCATCAGGGCGATCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTc                              >  2:4029514/1‑93 (MQ=255)

                                                             cGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGt                            <  2:3668687/93‑1 (MQ=255)

                                                             cGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGt                            <  1:2330653/93‑1 (MQ=255)

                                                              gAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTg                           <  2:2468516/93‑1 (MQ=255)

                                                              gAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTg                           <  1:2722646/93‑1 (MQ=255)

                                                              gAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTg                           >  2:1954461/1‑93 (MQ=255)

                                                               aaGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTgg                          <  1:3383146/93‑1 (MQ=255)

                                                                aGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGc                         <  1:1423275/93‑1 (MQ=255)

                                                                 ggggACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGGCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCt                        >  1:2322864/1‑93 (MQ=255)

                                                                  gggACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTg                       >  2:322447/1‑93 (MQ=255)

                                                                   ggACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGc                      <  1:4412581/93‑1 (MQ=255)

                                                                        gggATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGG‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCCGCCGGTg                 >  1:1236998/1‑93 (MQ=255)

                                                                        gggATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTg                 <  1:4308072/93‑1 (MQ=255)

                                                                        gggATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTg                 >  1:4123709/1‑93 (MQ=255)

                                                                        gggATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCACGCCCCGGATGCCCAAGTTCATCGCCAGGGCGTGGCGCCCgggg                 >  1:173671/1‑91 (MQ=255)

                                                                         ggATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGc                >  2:1219465/1‑93 (MQ=255)

                                                                           aTGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGTCCCGGATGCCAAAGTTGATCGCCAGGTCGCGGCTGCCGGTGCCg              >  1:3237657/1‑93 (MQ=255)

                                                                           aTGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCg              >  1:2102861/1‑93 (MQ=255)

                                                                           aTGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCg              >  1:1107799/1‑93 (MQ=255)

                                                                            tGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAGGCCCCGGATGCCAAAGCTCATCGCCAGGTCGTGGCTGCCGGTGCCgt             >  2:87492/1‑93 (MQ=255)

                                                                            tGCCGTCCATCAGGGCGGGCGAGCGGCGGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCgt             <  2:2054630/93‑1 (MQ=255)

                                                                              ccGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCgttg           <  2:2072237/93‑1 (MQ=255)

                                                                              ccGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCgttg           >  1:3351709/1‑93 (MQ=255)

                                                                                gTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCgttgtt         <  1:4376353/93‑1 (MQ=255)

                                                                                gTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCgttgtt         <  1:490684/93‑1 (MQ=255)

                                                                                 tCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGttt        <  1:61005/93‑1 (MQ=255)

                                                                                   cATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTc      >  2:1517043/1‑93 (MQ=255)

                                                                                   cATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGGTGTTTTc      >  1:91217/1‑93 (MQ=255)

                                                                                     tCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCg    >  1:1281107/1‑93 (MQ=255)

                                                                                      cAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGCTTTCCgg   >  1:774228/1‑93 (MQ=255)

                                                                                      cAGGGCGGTCGAGCGGCTGCCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCgg   <  1:1680005/93‑1 (MQ=255)

                                                                                       aGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCGgc  <  2:4075046/93‑1 (MQ=255)

ATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGACGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCGGC  >  NC_000913/4513572‑4513751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCAATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGACGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCGGC  >  NC_000913/4513569‑4513751

TCAATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGG                                                                                            >  SRR4302535.2787947/1‑94 (MQ=60)

TCAATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGG                                                                                            >  SRR4302535.3864844/1‑94 (MQ=60)

 CATTGTCATCGATGTTGCTGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGC                                                                                           <  SRR4302535.2425321/94‑1 (MQ=60)

 CAATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGC                                                                                           <  SRR4302535.4104281/94‑1 (MQ=60)

  AATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCG                                                                                          >  SRR4302535.2484712/1‑94 (MQ=60)

  AATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCG                                                                                          >  SRR4302535.4465090/1‑94 (MQ=60)

     GGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTC                                                                                       >  SRR4302535.3551365/1‑94 (MQ=60)

     GGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTC                                                                                       <  SRR4302535.4543567/94‑1 (MQ=60)

     GGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTC                                                                                       <  SRR4302535.4626636/94‑1 (MQ=60)

      GCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGCCGGGGATGCCGTCCATCAGGGCGGTCG                                                                                      >  SRR4302535.572156/1‑94 (MQ=60)

       CATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGA                                                                                     >  SRR4302535.4390972/1‑94 (MQ=60)

        ATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAG                                                                                    >  SRR4302535.2208507/1‑94 (MQ=60)

        ATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAG                                                                                    >  SRR4302535.967489/1‑94 (MQ=60)

        ATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAG                                                                                    >  SRR4302535.375350/1‑94 (MQ=60)

        ATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAG                                                                                    >  SRR4302535.1778515/1‑94 (MQ=60)

        ATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAG                                                                                    <  SRR4302535.1435495/94‑1 (MQ=60)

          CCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCG                                                                                  <  SRR4302535.2446094/94‑1 (MQ=60)

          CCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCG                                                                                  >  SRR4302535.1375199/1‑94 (MQ=60)

          CCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCG                                                                                  <  SRR4302535.907616/94‑1 (MQ=60)

           CATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTCAGGGGCGAAGGGGACGGGGCTGCCGTCCCTCAGGGCGGTCGAGCGG                                                                                 >  SRR4302535.4018319/1‑94 (MQ=60)

           CATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGG                                                                                 >  SRR4302535.2420858/1‑94 (MQ=60)

               TTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCTAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGG                                                                             <  SRR4302535.1263456/94‑1 (MQ=60)

                TGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGCAGGGGATGCGGTCCACCCGGGCGGTCGAGCGGCTGGG                                                                            >  SRR4302535.3904037/1‑94 (MQ=60)

                TGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGC                                                                            <  SRR4302535.2996861/94‑1 (MQ=60)

                  CCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGG                                                                          >  SRR4302535.1376072/1‑94 (MQ=60)

                   CGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAG                                                                         <  SRR4302535.914048/94‑1 (MQ=60)

                    GAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGG                                                                        <  SRR4302535.1131907/94‑1 (MQ=60)

                       CGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GC                                                                    >  SRR4302535.3845930/1‑94 (MQ=60)

                       CGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GC                                                                    <  SRR4302535.1786837/94‑1 (MQ=60)

                       CGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GC                                                                    <  SRR4302535.2496182/94‑1 (MQ=60)

                        GAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCG                                                                   >  SRR4302535.3217766/1‑94 (MQ=60)

                         AAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGG                                                                  <  SRR4302535.2431348/94‑1 (MQ=60)

                            CGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTT                                                               <  SRR4302535.2319450/94‑1 (MQ=60)

                            CGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTT                                                               <  SRR4302535.1315972/94‑1 (MQ=60)

                                AGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCACG                                                           >  SRR4302535.2301472/1‑94 (MQ=60)

                                AGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGAAGGGGATGCCGTCCCTCAGGGCCGTCGAGGGGCTGGCGGGGCGGCGGGTGCAG                                                            >  SRR4302535.822257/1‑94 (MQ=60)

                                 GCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGGGAGGC‑GCGGGTTttggc                                                          >  SRR4302535.4234503/1‑89 (MQ=60)

                                 GCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGC                                                          <  SRR4302535.1895276/94‑1 (MQ=60)

                                  CCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCC                                                         <  SRR4302535.1183734/94‑1 (MQ=60)

                                  CCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCC                                                         >  SRR4302535.874358/1‑94 (MQ=60)

                                   CAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGGCC                                                        >  SRR4302535.2844183/1‑94 (MQ=60)

                                   CAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCC                                                        >  SRR4302535.993530/1‑94 (MQ=60)

                                   CAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAGGCCC                                                        >  SRR4302535.3437407/1‑94 (MQ=60)

                                   CAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAAGCCC                                                        >  SRR4302535.930367/1‑94 (MQ=60)

                                    AGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCC                                                       <  SRR4302535.2260151/94‑1 (MQ=60)

                                    AGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCC                                                       >  SRR4302535.2825249/1‑94 (MQ=60)

                                      TGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGG                                                     >  SRR4302535.569038/1‑94 (MQ=60)

                                        AAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGAT                                                   <  SRR4302535.1392526/94‑1 (MQ=60)

                                         AAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATG                                                  <  SRR4302535.4074019/94‑1 (MQ=60)

                                         AAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATG                                                  <  SRR4302535.471057/94‑1 (MQ=60)

                                           GCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCC                                                <  SRR4302535.2330777/94‑1 (MQ=60)

                                            CTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCA                                               >  SRR4302535.1278441/1‑94 (MQ=60)

                                            CTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCA                                               <  SRR4302535.3531294/94‑1 (MQ=60)

                                               CGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAGGGCCCGGATGCCAAAG                                            >  SRR4302535.1699574/1‑94 (MQ=60)

                                                 GCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTT                                          <  SRR4302535.853623/94‑1 (MQ=60)

                                                 GCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTT                                          <  SRR4302535.4295164/94‑1 (MQ=60)

                                                   TGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGGCCCGGATGGCAAAGTTCA                                        >  SRR4302535.3760089/1‑94 (MQ=60)

                                                   TGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCA                                        <  SRR4302535.1866280/94‑1 (MQ=60)

                                                      CCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCG                                     <  SRR4302535.2382580/94‑1 (MQ=60)

                                                       CGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGC                                    >  SRR4302535.1286564/1‑94 (MQ=60)

                                                       CGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGC                                    <  SRR4302535.4484249/94‑1 (MQ=60)

                                                         TAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCA                                  <  SRR4302535.1848078/94‑1 (MQ=60)

                                                          AAGGGGCGAAGGGGACGGGTATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAG                                 <  SRR4302535.4146781/94‑1 (MQ=60)

                                                           AGGGGCGAAGGGGACGGGGATGCCGCCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGG                                >  SRR4302535.3383983/1‑94 (MQ=60)

                                                             GGGCGAAGGGGACTGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTC                              <  SRR4302535.2695179/94‑1 (MQ=60)

                                                              GGCGAAGGGGACAGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCG                             <  SRR4302535.2207603/94‑1 (MQ=60)

                                                                CGAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTG                           <  SRR4302535.2347322/94‑1 (MQ=60)

                                                                 GAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGG                          <  SRR4302535.1541974/94‑1 (MQ=60)

                                                                 GAAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGG                          <  SRR4302535.2742094/94‑1 (MQ=60)

                                                                  AAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGC                         <  SRR4302535.3406666/94‑1 (MQ=60)

                                                                  AAGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGC                         >  SRR4302535.4637786/1‑94 (MQ=60)

                                                                   AGGGGGCGGGGCTGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCT                        <  SRR4302535.1740524/94‑1 (MQ=60)

                                                                   AGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGGCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCT                        >  SRR4302535.2339486/1‑94 (MQ=60)

                                                                   AGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGcggcg                        >  SRR4302535.909599/1‑89 (MQ=60)

                                                                   AGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCT                        <  SRR4302535.1433438/94‑1 (MQ=60)

                                                                   AGGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCT                        <  SRR4302535.4620278/94‑1 (MQ=60)

                                                                    GGGGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTG                       >  SRR4302535.3444405/1‑94 (MQ=60)

                                                                      GGACGGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCC                     <  SRR4302535.4442781/94‑1 (MQ=60)

                                                                          GGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGG‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCCGCCGGTG                 >  SRR4302535.1245834/1‑94 (MQ=60)

                                                                          GGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTG                 >  SRR4302535.4151928/1‑94 (MQ=60)

                                                                          GGGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCACGCCCCGGATGCCCAAGTTCATCGCCAGGGCGTGGCgcccgggg                 >  SRR4302535.174870/1‑86 (MQ=60)

                                                                           GGGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGC                <  SRR4302535.4337545/94‑1 (MQ=60)

                                                                            GGATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCC               <  SRR4302535.229707/94‑1 (MQ=60)

                                                                             GATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGTCCCGGATGCCAAAGTTGATCGCCAGGTCGCGGCTGCCGGTGCCG              >  SRR4302535.3260133/1‑94 (MQ=60)

                                                                             GATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCG              >  SRR4302535.333402/1‑94 (MQ=60)

                                                                             GATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCG              >  SRR4302535.1115711/1‑94 (MQ=60)

                                                                             GATGCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCG              >  SRR4302535.2118027/1‑94 (MQ=60)

                                                                               TGCCGTCCATCAGGGCGGGCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTCCCGGGGCCGGT            >  SRR4302535.2752719/1‑94 (MQ=60)

                                                                                GCCGTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTG           >  SRR4302535.3375055/1‑94 (MQ=60)

                                                                                   GTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTT        <  SRR4302535.494126/94‑1 (MQ=60)

                                                                                   GTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTT        >  SRR4302535.3596903/1‑94 (MQ=60)

                                                                                   GTCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTT        <  SRR4302535.4406296/94‑1 (MQ=60)

                                                                                    TCCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTT       <  SRR4302535.61462/94‑1 (MQ=60)

                                                                                     CCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTC      <  SRR4302535.627430/94‑1 (MQ=60)

                                                                                     CCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTC      >  SRR4302535.2606959/1‑94 (MQ=60)

                                                                                     CCATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGGTGTTTTC      >  SRR4302535.91862/1‑94 (MQ=60)

                                                                                       ATCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCG    >  SRR4302535.1290250/1‑94 (MQ=60)

                                                                                        TCAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGGTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGCTTTCCGG   >  SRR4302535.779675/1‑94 (MQ=60)

                                                                                         CAGGGCGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCGGC  <  SRR4302535.4396095/94‑1 (MQ=60)

                                                                                         CAGGGCGGTCGAGCGGCTGCCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCGGC  <  SRR4302535.1692170/94‑1 (MQ=60)

TCAATGGCATCCATGTTGCCGAGCGAAACGGGAGCCAGTGAAAGCTGCGGCTGACCGTAAGGGGCGAAGGGGACGGGGATGCCGTCCATCAGGACGGTCGAGCGGCTGGCGAGGC‑GCGGGTTCAGGCCCCGGATGCCAAAGTTCATCGCCAGGTCGTGGCTGCCGGTGCCGTTGTTTTCCGGC  >  NC_000913/4513569‑4513751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`