Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,544,274 |
T→C |
L537P (CTC→CCC) |
fimD → |
FimD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,544,274 | 0 | T | C | 100.0%
| 637.2
/ NA
| 202 | L537P (CTC→CCC) | fimD | FimD |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/92); total (110/92) |
Only 100 of 208 total aligned reads displayed.
AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTA > NC_000913/4544185‑4544362
|
gTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCggg > 1:3711097/1‑93 (MQ=255)
tATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGgcg > 1:2070792/1‑93 (MQ=255)
aTTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGgcgc > 2:3651678/1‑93 (MQ=255)
ttCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGca > 2:3918975/1‑93 (MQ=255)
tCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGcac > 2:1573156/1‑93 (MQ=255)
tCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGcac < 1:1783047/93‑1 (MQ=255)
aGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAt > 2:3758260/1‑93 (MQ=255)
aGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAt > 2:546838/1‑93 (MQ=255)
ggTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc > 2:3938368/1‑93 (MQ=255)
gTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCa > 2:1495602/1‑93 (MQ=255)
ttAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCaa < 2:1081250/93‑1 (MQ=255)
tAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAac < 1:1257789/93‑1 (MQ=255)
tAACCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAac < 2:1161819/93‑1 (MQ=255)
aaGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAacc > 2:1447255/1‑92 (MQ=255)
aaGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAaca > 1:78466/1‑93 (MQ=255)
gCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACt > 1:1387251/1‑93 (MQ=255)
gAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTa > 2:3192168/1‑93 (MQ=255)
aaaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAt < 2:4399873/93‑1 (MQ=255)
aaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAtt > 1:2498507/1‑93 (MQ=255)
aTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAttt > 2:1371218/1‑93 (MQ=255)
aTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAttt < 2:3612974/93‑1 (MQ=255)
aTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAttt > 2:1865082/1‑93 (MQ=255)
tCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGa < 1:1525371/93‑1 (MQ=255)
tCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGa > 2:742858/1‑93 (MQ=255)
aCCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGt > 1:3805931/1‑93 (MQ=255)
aCCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGt > 2:2780652/1‑93 (MQ=255)
ccGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTg < 1:567079/93‑1 (MQ=255)
ccGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTg > 2:2551905/1‑93 (MQ=255)
ccGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTg > 2:3021789/1‑93 (MQ=255)
cGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTgt < 2:4636092/93‑2 (MQ=255)
cGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTgg > 2:3793042/1‑93 (MQ=255)
caCTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGt < 1:1165286/92‑1 (MQ=255)
aCTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTa < 2:2409030/93‑1 (MQ=255)
cTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAg > 1:3372596/1‑93 (MQ=255)
tATTACAACCTCGCTTATATCAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGc > 2:4554632/1‑93 (MQ=255)
tATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGc < 1:1016152/93‑1 (MQ=255)
tATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGc > 1:1117364/1‑93 (MQ=255)
ttACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCa < 2:2862205/93‑1 (MQ=255)
aCAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATc > 2:1438704/1‑93 (MQ=255)
aCAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATc < 1:984853/93‑1 (MQ=255)
cAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCa > 1:227451/1‑93 (MQ=255)
aCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa > 2:1269533/1‑93 (MQ=255)
aCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa < 2:776663/93‑1 (MQ=255)
aCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa > 1:3430893/1‑93 (MQ=255)
aCCTCGCCTATAACAAAAGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGTGCACATCAACAATGTATTTGAGTGGTAGCCATCaaa > 2:4090953/1‑93 (MQ=255)
cTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTATTCAGCAATCCGGGCGCACGTCAACACTGTATTTGAGTGGTAGCCATCAAACt > 1:1969260/1‑93 (MQ=255)
tCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACtt > 1:4676091/1‑93 (MQ=255)
cGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTa < 2:4194120/93‑1 (MQ=255)
cGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTa < 2:2100766/93‑1 (MQ=255)
gCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAt > 2:142402/1‑93 (MQ=255)
cTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAtt > 1:860042/1‑93 (MQ=255)
cTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAtt < 1:453395/93‑1 (MQ=255)
cTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAtt < 2:1972206/93‑1 (MQ=255)
ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg > 1:2674455/1‑93 (MQ=255)
ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg > 2:3860168/1‑93 (MQ=255)
ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg > 2:132516/1‑93 (MQ=255)
tataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgg < 1:377744/93‑1 (MQ=255)
aacaaacaCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGa < 1:2738673/93‑1 (MQ=255)
aaCAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGa < 1:1688620/93‑1 (MQ=255)
aaCAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGa > 2:606859/1‑93 (MQ=255)
aaCAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGa < 2:700879/93‑1 (MQ=255)
aCAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGaa > 1:3567405/1‑93 (MQ=255)
aaaCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACg > 1:689621/1‑93 (MQ=255)
aaCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGa < 1:3403297/93‑1 (MQ=255)
aCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAg < 1:1822154/93‑1 (MQ=255)
aCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAg < 1:2781213/93‑1 (MQ=255)
cgcgGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGt < 1:1538324/93‑1 (MQ=255)
ggAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATg < 1:3971176/93‑1 (MQ=255)
ggAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATg < 2:2931139/93‑1 (MQ=255)
gAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGt > 2:2257090/1‑93 (MQ=255)
aaaTTACAACTCACCGTTACTCAGCATCCCGGGCGCACATCAACACTGTATTTGAGTGGTATCCATCAAACTTATTGGGGAACGAGTAATGTc < 2:1240797/93‑1 (MQ=255)
aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa < 1:2987519/93‑1 (MQ=255)
ttACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAt < 1:3117713/93‑1 (MQ=255)
aCAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGa > 2:3447095/1‑93 (MQ=255)
aCAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGa > 1:2378976/1‑93 (MQ=255)
cAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAg > 2:3314937/1‑93 (MQ=255)
aaCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGc < 2:2882332/93‑1 (MQ=255)
aaCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGc > 2:174928/1‑93 (MQ=255)
cTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCaa > 2:235697/1‑93 (MQ=255)
cTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCaa > 1:4089242/1‑93 (MQ=255)
cTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCaa > 1:1858333/1‑93 (MQ=255)
cTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCaa < 2:3924857/93‑1 (MQ=255)
cTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCaa < 1:1351286/93‑1 (MQ=255)
tCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAt > 2:2485431/1‑93 (MQ=255)
ccACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAt < 2:1700714/92‑1 (MQ=255)
cACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAtt < 1:540201/93‑1 (MQ=255)
cACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAtt > 1:1602924/1‑93 (MQ=255)
aCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTc > 2:3408049/1‑93 (MQ=255)
aCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTc > 1:4228134/1‑93 (MQ=255)
gTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAg < 2:1521842/93‑1 (MQ=255)
gTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAg < 1:2819637/93‑1 (MQ=255)
ttACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAgg > 1:4119402/1‑93 (MQ=255)
tACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGc < 1:3940436/93‑1 (MQ=255)
aCTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGCGAACGAGGAATGTCGATGAGCAATTCCAGGCt > 2:276637/1‑93 (MQ=255)
cTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTg < 1:634434/93‑1 (MQ=255)
tCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTgg > 1:3164593/1‑93 (MQ=255)
aGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAt < 1:2352398/93‑1 (MQ=255)
aGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAt < 1:1315366/93‑1 (MQ=255)
gCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAtt < 2:520376/93‑1 (MQ=255)
cAACCCGGACGCACGTCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTa > 2:4577618/1‑93 (MQ=255)
|
AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTA > NC_000913/4544185‑4544362
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA > NC_000913/4544181‑4544366
|
ACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACC > SRR4302535.3032671/1‑94 (MQ=60)
CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC > SRR4302535.2408885/1‑94 (MQ=60)
AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG > SRR4302535.3736804/1‑94 (MQ=60)
TTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCG > SRR4302535.1967/1‑94 (MQ=60)
TTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCG > SRR4302535.2085716/1‑94 (MQ=60)
TTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCG > SRR4302535.3955775/1‑94 (MQ=60)
TATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGC > SRR4302535.3083011/1‑94 (MQ=60)
TTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC < SRR4302535.3046864/94‑1 (MQ=60)
TCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACA < SRR4302535.1795953/94‑1 (MQ=60)
caggtgtaaccaaaatacacggtctacTACAAACTCGCTTATAACAAACGCGGGAAATTCCAACTCACCGTTACTCAGCAACCCGGGCGCACAT < SRR4302535.2393984/67‑1 (MQ=60)
CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT < SRR4302535.184488/94‑1 (MQ=60)
AGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATC > SRR4302535.723438/1‑94 (MQ=60)
AGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATC > SRR4302535.2132198/1‑94 (MQ=60)
GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA > SRR4302535.1166490/1‑94 (MQ=60)
GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA > SRR4302535.3453202/1‑94 (MQ=60)
GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA > SRR4302535.3718588/1‑94 (MQ=60)
TAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACA < SRR4302535.1266785/94‑1 (MQ=60)
TAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACA > SRR4302535.79030/1‑94 (MQ=60)
AAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACAC < SRR4302535.2938019/94‑1 (MQ=60)
AAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACAC > SRR4302535.1349232/1‑94 (MQ=60)
AGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACT < SRR4302535.1593874/94‑1 (MQ=60)
AGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACT > SRR4302535.1397153/1‑94 (MQ=60)
GCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTG > SRR4302535.565228/1‑94 (MQ=60)
CGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTA > SRR4302535.2778157/1‑94 (MQ=60)
AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT > SRR4302535.2516532/1‑94 (MQ=60)
AATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTT < SRR4302535.588836/94‑1 (MQ=60)
TTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGA < SRR4302535.887974/94‑1 (MQ=60)
TTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGA < SRR4302535.508891/94‑1 (MQ=60)
TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG > SRR4302535.3156034/1‑94 (MQ=60)
TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG < SRR4302535.1536361/94‑1 (MQ=60)
CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT > SRR4302535.1838927/1‑94 (MQ=60)
CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT < SRR4302535.1708901/94‑1 (MQ=60)
CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT > SRR4302535.3832169/1‑94 (MQ=60)
CCCGACTATTACAACCTAGCTTATAACAAACGCGGGAAATTACAACTCTCCGTTACTCAGCAGCCCGGGCGCACATCAACACTGTATTTGAGTG < SRR4302535.402702/94‑1 (MQ=60)
CCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGG > SRR4302535.3224301/1‑94 (MQ=60)
CCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGG < SRR4302535.571049/94‑1 (MQ=60)
CGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGT > SRR4302535.1380432/1‑94 (MQ=60)
CACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA < SRR4302535.1173609/94‑1 (MQ=60)
ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG > SRR4302535.3396057/1‑94 (MQ=60)
CTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGC > SRR4302535.1125331/1‑94 (MQ=60)
CTATGACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGC < SRR4302535.1049510/94‑1 (MQ=60)
TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC < SRR4302535.1023374/94‑1 (MQ=60)
TTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCAT < SRR4302535.1297846/94‑1 (MQ=60)
ACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCA < SRR4302535.991851/94‑1 (MQ=60)
ACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCA > SRR4302535.229016/1‑94 (MQ=60)
AACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAA > SRR4302535.3454738/1‑94 (MQ=60)
CCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTATTCAGCAATCCGGGCGCACGTCAACACTGTATTTGAGTGGTAGCCATCAAACT > SRR4302535.1983447/1‑94 (MQ=60)
CTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTT > SRR4302535.4707654/1‑94 (MQ=60)
CTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGAAACCCGGCCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTT > SRR4302535.1507430/1‑94 (MQ=60)
CGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT > SRR4302535.3828914/1‑94 (MQ=60)
CGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT > SRR4302535.1631072/1‑94 (MQ=60)
GCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATT > SRR4302535.866113/1‑94 (MQ=60)
GCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATT < SRR4302535.4509967/94‑1 (MQ=60)
CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG > SRR4302535.2693591/1‑94 (MQ=60)
CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG < SRR4302535.456572/94‑1 (MQ=60)
TATAACACACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGGGGTAGCCATCAAACTTATTGGG < SRR4302535.1214964/94‑1 (MQ=60)
TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG < SRR4302535.380363/94‑1 (MQ=60)
AACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAA < SRR4302535.1700844/94‑1 (MQ=60)
AACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAA > SRR4302535.3592141/1‑94 (MQ=60)
AACAAACACGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAA < SRR4302535.2758201/94‑1 (MQ=60)
ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC < SRR4302535.3568119/94‑1 (MQ=60)
CAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACG > SRR4302535.694454/1‑94 (MQ=60)
AACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAG < SRR4302535.3412150/94‑1 (MQ=60)
AACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAG < SRR4302535.3426982/94‑1 (MQ=60)
ACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGT < SRR4302535.2801011/94‑1 (MQ=60)
ACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGT < SRR4302535.1835316/94‑1 (MQ=60)
CGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTA > SRR4302535.2708262/1‑94 (MQ=60)
CGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTA < SRR4302535.1549411/94‑1 (MQ=60)
CGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTA > SRR4302535.375460/1‑94 (MQ=60)
GGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATG < SRR4302535.850763/94‑1 (MQ=60)
GGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGT < SRR4302535.4256806/94‑1 (MQ=60)
GGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGT < SRR4302535.3998300/94‑1 (MQ=60)
GAAATGACAACTCTCCGTTACTCAGCAACCCGGGCGCACATCAACGCTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTC < SRR4302535.361462/94‑1 (MQ=60)
AATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGA > SRR4302535.416963/1‑94 (MQ=60)
ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT < SRR4302535.3008469/94‑1 (MQ=60)
TTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATG < SRR4302535.3139417/94‑1 (MQ=60)
TACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA > SRR4302535.2396061/1‑94 (MQ=60)
ACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAA > SRR4302535.4117222/1‑94 (MQ=60)
ACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAA > SRR4302535.1871733/1‑94 (MQ=60)
CTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAT < SRR4302535.1360960/94‑1 (MQ=60)
TCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATT > SRR4302535.1614488/1‑94 (MQ=60)
CACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTC < SRR4302535.543970/94‑1 (MQ=60)
CACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTC > SRR4302535.4257069/1‑94 (MQ=60)
CACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTC > SRR4302535.2546842/1‑94 (MQ=60)
CCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCA < SRR4302535.1546808/94‑1 (MQ=60)
CCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCA < SRR4302535.2832058/94‑1 (MQ=60)
CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG > SRR4302535.409065/1‑94 (MQ=60)
GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG > SRR4302535.4147595/1‑94 (MQ=60)
GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG < SRR4302535.2839662/94‑1 (MQ=60)
GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG > SRR4302535.3992795/1‑94 (MQ=60)
TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT < SRR4302535.3967335/94‑1 (MQ=60)
CTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGG < SRR4302535.638855/94‑1 (MQ=60)
CTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGG > SRR4302535.2486633/1‑94 (MQ=60)
CTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGG > SRR4302535.3186533/1‑94 (MQ=60)
TCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGA > SRR4302535.4600756/1‑94 (MQ=60)
TCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGA < SRR4302535.2343861/94‑1 (MQ=60)
TCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGA < SRR4302535.4141244/94‑1 (MQ=60)
CAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTCTTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAT > SRR4302535.2072883/1‑94 (MQ=60)
CAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAT < SRR4302535.2389500/94‑1 (MQ=60)
AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT < SRR4302535.1324763/94‑1 (MQ=60)
AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT < SRR4302535.669894/94‑1 (MQ=60)
AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT > SRR4302535.1829760/1‑94 (MQ=60)
AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT < SRR4302535.2369262/94‑1 (MQ=60)
AACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAA > SRR4302535.283395/1‑94 (MQ=60)
ACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAAT < SRR4302535.1882944/94‑1 (MQ=60)
ACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAAT > SRR4302535.3782712/1‑94 (MQ=60)
ACCCGGGCGCACATCAACACTGNATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAAT < SRR4302535.4253785/94‑1 (MQ=60)
CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA > SRR4302535.4557559/1‑94 (MQ=60)
CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA < SRR4302535.554233/94‑1 (MQ=60)
CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA < SRR4302535.3379427/94‑1 (MQ=60)
CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA < SRR4302535.1001406/94‑1 (MQ=60)
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ACGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA > NC_000913/4544181‑4544366
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
