Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,544,274	T→C	L537P (CTC→CCC)	fimD →	FimD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,544,274	0	T	C	99.7%	1162.0 / NA	366	L537P (CTC→CCC)	fimD	FimD
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (172/193); minor base A (1/0); total (173/193)
Fisher's exact test for biased strand distribution p-value = 4.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 372 total aligned reads displayed.

GAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA  >  NC_000913/4544184‑4544363

gAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCg                                                                                         <  2:88679/93‑1 (MQ=255)

  gTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCggg                                                                                       >  1:1209269/1‑93 (MQ=255)

  gTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCggg                                                                                       <  2:376809/93‑1 (MQ=255)

   ttATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGgc                                                                                      >  1:4347125/1‑93 (MQ=255)

      ttCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGca                                                                                   >  1:1398281/1‑93 (MQ=255)

      ttCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGca                                                                                   >  1:7836145/1‑93 (MQ=255)

      ttCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGca                                                                                   >  1:3258441/1‑93 (MQ=255)

         aGGTTAAGCCAAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAt                                                                                <  2:3403549/93‑1 (MQ=255)

          ggTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATc                                                                               >  2:5318968/1‑93 (MQ=255)

            ttAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCaa                                                                             >  2:1146713/1‑93 (MQ=255)

             tAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAac                                                                            <  1:7732459/93‑1 (MQ=255)

             tAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAac                                                                            >  2:3531264/1‑93 (MQ=255)

              aaGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAaca                                                                           <  1:7540299/93‑1 (MQ=255)

              aaGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAaca                                                                           <  1:543426/93‑1 (MQ=255)

              aaGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAaca                                                                           <  1:3993859/93‑1 (MQ=255)

               aGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAacac                                                                          >  1:6660633/1‑93 (MQ=255)

                gCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACt                                                                         <  2:7845745/93‑1 (MQ=255)

                 ccGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTg                                                                        >  1:1767511/1‑93 (MQ=255)

                  cGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGt                                                                       <  2:1561851/93‑1 (MQ=255)

                     aaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAtt                                                                    <  2:4419206/93‑1 (MQ=255)

                     aaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAtt                                                                    >  1:1912868/1‑93 (MQ=255)

                     aaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAtt                                                                    <  2:6218533/93‑1 (MQ=255)

                     aaTTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAtt                                                                    <  1:4972351/93‑1 (MQ=255)

                       ttCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTg                                                                  <  2:5999211/93‑1 (MQ=255)

                        tCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGa                                                                 <  1:5952757/93‑1 (MQ=255)

                         cACCGACTATTACAACCTCGCTTATAACAATCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTgcg                                                                <  2:634754/93‑3 (MQ=255)

                            cGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTgg                                                             <  2:161399/93‑1 (MQ=255)

                              aCTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTa                                                           >  1:1988616/1‑93 (MQ=255)

                              aCTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTa                                                           <  1:1006773/93‑1 (MQ=255)

                               cTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAg                                                          <  2:4928433/93‑1 (MQ=255)

                               cTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAg                                                          >  1:582428/1‑93 (MQ=255)

                                tATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGc                                                         >  2:2575498/1‑93 (MQ=255)

                                tATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGc                                                         <  1:2584987/93‑1 (MQ=255)

                                 aTTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGcc                                                        <  1:7887462/93‑1 (MQ=255)

                                 aTTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGcc                                                        >  1:3402529/1‑93 (MQ=255)

                                 aTTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGcc                                                        >  2:2006746/1‑93 (MQ=255)

                                 aTTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGcc                                                        >  2:3032620/1‑93 (MQ=255)

                                 aTTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGcc                                                        <  2:4627452/93‑1 (MQ=255)

                                  ttACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCa                                                       <  2:1352982/93‑1 (MQ=255)

                                  ttACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCa                                                       <  2:5765396/93‑1 (MQ=255)

                                  ttACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCa                                                       >  2:472845/1‑93 (MQ=255)

                                  ttACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCa                                                       <  1:1047337/93‑1 (MQ=255)

                                     cAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCa                                                    >  1:501288/1‑93 (MQ=255)

                                       aCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa                                                  >  1:7171406/1‑93 (MQ=255)

                                       aCCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCaaa                                                  >  1:3064201/1‑93 (MQ=255)

                                        ccTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAAc                                                 <  2:3716679/93‑1 (MQ=255)

                                        ccTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCACACATCAACACTGTATTTGAGTGGTAGCCATCAAAc                                                 <  1:6618397/93‑1 (MQ=255)

                                         cTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACt                                                >  2:2446717/1‑93 (MQ=255)

                                         cTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACt                                                <  1:2130407/93‑1 (MQ=255)

                                          tCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACtt                                               >  1:5592828/1‑93 (MQ=255)

                                          tCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACtt                                               >  1:3739711/1‑93 (MQ=255)

                                            gCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAt                                             <  2:638505/93‑1 (MQ=255)

                                             cTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAtt                                            <  2:1213706/93‑1 (MQ=255)

                                             cTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAtt                                            >  2:4556758/1‑93 (MQ=255)

                                             cTTATAACAAACACGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGATTGGTAGTCATCAAACTTAtt                                            >  2:7636156/1‑93 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           >  2:6741034/1‑93 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           <  2:5294325/93‑1 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           >  1:3340425/1‑93 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           <  1:3546189/93‑1 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           >  2:821195/1‑93 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           <  2:3313027/93‑1 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           >  1:2268106/1‑93 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           <  2:1674210/93‑1 (MQ=255)

                                              ttATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTg                                           <  1:6487771/93‑1 (MQ=255)

                                               tataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgg                                          <  2:1883698/93‑1 (MQ=255)

                                                ataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTggg                                         <  2:5560908/93‑1 (MQ=255)

                                                ataACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTggg                                         <  1:5565569/93‑1 (MQ=255)

                                                 taACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTgggg                                        <  2:2785290/93‑1 (MQ=255)

                                                 taACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGAGGTAGCCATCAAACTTATTgggg                                        >  2:5413413/1‑93 (MQ=255)

                                                    cAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAc                                     <  1:861494/93‑1 (MQ=255)

                                                    cAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAc                                     >  1:523357/1‑93 (MQ=255)

                                                     aaaCGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACg                                    <  2:180149/93‑1 (MQ=255)

                                                          cgGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTaa                               <  2:3195829/93‑1 (MQ=255)

                                                          cgGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTaa                               <  1:7350216/93‑1 (MQ=255)

                                                           gggAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAt                              <  2:6121714/93‑1 (MQ=255)

                                                             gAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGt                            <  1:2785490/93‑1 (MQ=255)

                                                              aaaTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTc                           >  2:7864003/1‑93 (MQ=255)

                                                              aaaTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTc                           <  2:7566572/93‑1 (MQ=255)

                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         >  1:7214306/1‑93 (MQ=255)

                                                                aTTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGa                         >  1:1318173/1‑93 (MQ=255)

                                                                 ttACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAt                        <  1:3747359/93‑1 (MQ=255)

                                                                 ttACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAt                        >  2:7176424/1‑93 (MQ=255)

                                                                 ttACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAt                        <  1:2322376/93‑1 (MQ=255)

                                                                  tACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATg                       <  1:476669/93‑1 (MQ=255)

                                                                   aCAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGa                      <  2:2640464/93‑1 (MQ=255)

                                                                    cAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAg                     <  1:6890047/93‑1 (MQ=255)

                                                                     aaCTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGc                    >  1:2954245/1‑93 (MQ=255)

                                                                       cTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCaa                  <  2:7122679/93‑1 (MQ=255)

                                                                        tCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAt                 >  1:4469248/1‑93 (MQ=255)

                                                                          aCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTc               >  2:5181219/1‑93 (MQ=255)

                                                                           ccGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTcc              <  1:603431/93‑1 (MQ=255)

                                                                            cGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCa             <  1:3939954/93‑1 (MQ=255)

                                                                             gTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAg            <  2:5021484/93‑1 (MQ=255)

                                                                             gTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAg            >  2:3125862/1‑93 (MQ=255)

                                                                             gTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAg            >  1:4594169/1‑93 (MQ=255)

                                                                              ttACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAgg           >  2:1496180/1‑93 (MQ=255)

                                                                               tACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGc          <  1:6406881/93‑1 (MQ=255)

                                                                                 cTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTg        <  2:2291254/93‑1 (MQ=255)

                                                                                  tCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTgg       <  1:1447037/93‑1 (MQ=255)

                                                                                       aaCCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTaa  >  2:4107263/1‑93 (MQ=255)

GAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAA  >  NC_000913/4544184‑4544363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  >  NC_000913/4544182‑4544367

CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                              <  SRR4302543.4762744/94‑1 (MQ=60)

CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCC                                                                                              >  SRR4302543.5823988/1‑94 (MQ=60)

 GGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCG                                                                                             >  SRR4302543.594954/1‑94 (MQ=60)

   AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG                                                                                           >  SRR4302543.1220150/1‑94 (MQ=60)

   AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG                                                                                           >  SRR4302543.6626964/1‑94 (MQ=60)

   AGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGG                                                                                           <  SRR4302543.2722712/94‑1 (MQ=60)

    GTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGC                                                                                          >  SRR4302543.4386534/1‑94 (MQ=60)

    GTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGC                                                                                          >  SRR4302543.289576/1‑94 (MQ=60)

    GTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGC                                                                                          <  SRR4302543.2696469/94‑1 (MQ=60)

      TATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGC                                                                                        >  SRR4302543.4130360/1‑94 (MQ=60)

       ATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCA                                                                                       >  SRR4302543.3287892/1‑94 (MQ=60)

       ATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCA                                                                                       >  SRR4302543.7909907/1‑94 (MQ=60)

       ATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCA                                                                                       >  SRR4302543.1410890/1‑94 (MQ=60)

        TTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCAC                                                                                      <  SRR4302543.1016122/94‑1 (MQ=60)

          CAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACAT                                                                                    <  SRR4302543.4409889/94‑1 (MQ=60)

           AGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATC                                                                                   >  SRR4302543.6862194/1‑94 (MQ=60)

           AGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATC                                                                                   >  SRR4302543.1386167/1‑94 (MQ=60)

            GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                  <  SRR4302543.7860851/94‑1 (MQ=60)

            GGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                  >  SRR4302543.3128188/1‑94 (MQ=60)

            AGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCA                                                                                  <  SRR4302543.3469766/94‑1 (MQ=60)

             GTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAA                                                                                 >  SRR4302543.2039509/1‑94 (MQ=60)

              TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                                <  SRR4302543.6654513/94‑1 (MQ=60)

              TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                                <  SRR4302543.531223/94‑1 (MQ=60)

              TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAAC                                                                                >  SRR4302543.3762885/1‑94 (MQ=60)

              TTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACAGTTACTCAGCAACCCGGACGCACATCAAC                                                                                >  SRR4302543.2276893/1‑94 (MQ=60)

               TAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACA                                                                               <  SRR4302543.4394607/94‑1 (MQ=60)

               TAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACA                                                                               <  SRR4302543.3607140/94‑1 (MQ=60)

               TAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACA                                                                               <  SRR4302543.7805529/94‑1 (MQ=60)

                AAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACAC                                                                              >  SRR4302543.6723514/1‑94 (MQ=60)

                AAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACAC                                                                              <  SRR4302543.4029416/94‑1 (MQ=60)

                AAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACAC                                                                              >  SRR4302543.2136797/1‑94 (MQ=60)

                AAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACAC                                                                              <  SRR4302543.548445/94‑1 (MQ=60)

                AAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACAC                                                                              <  SRR4302543.7612169/94‑1 (MQ=60)

                AAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACAC                                                                              <  SRR4302543.548447/94‑1 (MQ=60)

                  GCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTG                                                                            <  SRR4302543.3704128/94‑1 (MQ=60)

                  GCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTG                                                                            >  SRR4302543.1783317/1‑94 (MQ=60)

                   CCGAAACTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAGCCCGGGCGCACATCAACACTGT                                                                           <  SRR4302543.189379/94‑1 (MQ=60)

                    CGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTA                                                                          >  SRR4302543.7589852/1‑94 (MQ=60)

                     GAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAT                                                                         <  SRR4302543.6606590/94‑1 (MQ=60)

                      AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                        >  SRR4302543.4781072/1‑94 (MQ=60)

                      AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                        >  SRR4302543.4781071/1‑94 (MQ=60)

                      AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                        <  SRR4302543.6957319/94‑1 (MQ=60)

                      AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                        <  SRR4302543.1972495/94‑1 (MQ=60)

                      AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                        >  SRR4302543.1930111/1‑94 (MQ=60)

                      AAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATT                                                                        <  SRR4302543.1909183/94‑1 (MQ=60)

                       AATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTT                                                                       <  SRR4302543.5017611/94‑1 (MQ=60)

                       AATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTT                                                                       <  SRR4302543.2770157/94‑1 (MQ=60)

                       AATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTT                                                                       <  SRR4302543.6208496/94‑1 (MQ=60)

                         TTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGA                                                                     >  SRR4302543.3776318/1‑94 (MQ=60)

                         TTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGA                                                                     >  SRR4302543.3776317/1‑94 (MQ=60)

                         TTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGA                                                                     >  SRR4302543.2249196/1‑94 (MQ=60)

                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    >  SRR4302543.1422160/1‑94 (MQ=60)

                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302543.2427377/94‑1 (MQ=60)

                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    >  SRR4302543.6474956/1‑94 (MQ=60)

                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302543.4893745/94‑1 (MQ=60)

                          TCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAG                                                                    <  SRR4302543.6007234/94‑1 (MQ=60)

                           CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT                                                                   >  SRR4302543.1075847/1‑94 (MQ=60)

                           CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT                                                                   >  SRR4302543.5058401/1‑94 (MQ=60)

                           CACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGT                                                                   >  SRR4302543.6846651/1‑94 (MQ=60)

                            ACCGACTATTACAACCTCGCTTATGACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                  >  SRR4302543.4514737/1‑94 (MQ=60)

                            ACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTG                                                                  >  SRR4302543.333795/1‑94 (MQ=60)

                              CGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGT                                                                >  SRR4302543.6925887/1‑94 (MQ=60)

                              CGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGT                                                                >  SRR4302543.5533081/1‑94 (MQ=60)

                               GACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA                                                               <  SRR4302543.3057477/94‑1 (MQ=60)

                               GACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA                                                               <  SRR4302543.1452023/94‑1 (MQ=60)

                               GACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA                                                               >  SRR4302543.2006439/1‑94 (MQ=60)

                               GACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTA                                                               >  SRR4302543.5631401/1‑94 (MQ=60)

                                ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG                                                              >  SRR4302543.587751/1‑94 (MQ=60)

                                ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG                                                              <  SRR4302543.1015679/94‑1 (MQ=60)

                                ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG                                                              >  SRR4302543.1221836/1‑94 (MQ=60)

                                ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG                                                              >  SRR4302543.3201577/1‑94 (MQ=60)

                                ACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAG                                                              <  SRR4302543.4015347/94‑1 (MQ=60)

                                  TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGGC                                                            >  SRR4302543.2096342/1‑94 (MQ=60)

                                  TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                            >  SRR4302543.5625481/1‑94 (MQ=60)

                                  TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                            >  SRR4302543.3433007/1‑94 (MQ=60)

                                  TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                            <  SRR4302543.2608506/94‑1 (MQ=60)

                                  TATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCC                                                            <  SRR4302543.1656687/94‑1 (MQ=60)

                                   ATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCA                                                           >  SRR4302543.1464418/1‑94 (MQ=60)

                                   ATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCA                                                           <  SRR4302543.7961660/94‑1 (MQ=60)

                                    TTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCAT                                                          <  SRR4302543.82126/94‑1 (MQ=60)

                                    TTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCAT                                                          >  SRR4302543.1930668/1‑94 (MQ=60)

                                    TTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCAT                                                          <  SRR4302543.1056717/94‑1 (MQ=60)

                                      ACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCA                                                        >  SRR4302543.505932/1‑94 (MQ=60)

                                       CAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAA                                                       >  SRR4302543.7397060/1‑94 (MQ=60)

                                       CAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGACGCCCACCAACACTGTATTTGAGTGGTAGCCATCAA                                                       >  SRR4302543.1247906/1‑94 (MQ=60)

                                        AACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAA                                                      >  SRR4302543.3862510/1‑94 (MQ=60)

                                        AACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAA                                                      >  SRR4302543.7241038/1‑94 (MQ=60)

                                        AACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAA                                                      >  SRR4302543.3091762/1‑94 (MQ=60)

                                        AACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAA                                                      <  SRR4302543.7814830/94‑1 (MQ=60)

                                        AACCTAGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACACAGGAGCACATCAACACTGTATTTGAGTGGTAGatatcaca                                                      >  SRR4302543.3091977/1‑86 (MQ=60)

                                         ACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAAC                                                     <  SRR4302543.7909908/94‑1 (MQ=60)

                                          CCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACT                                                    >  SRR4302543.7657220/1‑94 (MQ=60)

                                          CCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACT                                                    >  SRR4302543.7657221/1‑94 (MQ=60)

                                          CCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCACACATCAACACTGTATTTGAGTGGTAGCCATCAAACT                                                    <  SRR4302543.6680805/94‑1 (MQ=60)

                                           CTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTT                                                   >  SRR4302543.3772609/1‑94 (MQ=60)

                                           CTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTT                                                   <  SRR4302543.2149480/94‑1 (MQ=60)

                                           CTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTT                                                   >  SRR4302543.5643772/1‑94 (MQ=60)

                                             CGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT                                                 <  SRR4302543.950189/94‑1 (MQ=60)

                                             CGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT                                                 <  SRR4302543.3555608/94‑1 (MQ=60)

                                             CGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTAT                                                 <  SRR4302543.4036668/94‑1 (MQ=60)

                                               CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                               <  SRR4302543.4529989/94‑1 (MQ=60)

                                               CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                               >  SRR4302543.2288820/1‑94 (MQ=60)

                                               CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                               >  SRR4302543.3370514/1‑94 (MQ=60)

                                               CTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTG                                               >  SRR4302543.641339/1‑94 (MQ=60)

                                                TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGG                                              <  SRR4302543.3577673/94‑1 (MQ=60)

                                                TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGG                                              <  SRR4302543.6548890/94‑1 (MQ=60)

                                                TTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGAATTTGAGTGGTAGCCATCAAACTTATTGG                                              <  SRR4302543.5608237/94‑1 (MQ=60)

                                                 TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                             >  SRR4302543.1160576/1‑94 (MQ=60)

                                                 TATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                             <  SRR4302543.6689699/94‑1 (MQ=60)

                                                 TATAACAAACGCGGGAAATTACAACCCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGG                                             <  SRR4302543.794085/94‑1 (MQ=60)

                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                            <  SRR4302543.2327077/94‑1 (MQ=60)

                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                            <  SRR4302543.5616197/94‑1 (MQ=60)

                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                            >  SRR4302543.5113220/1‑94 (MQ=60)

                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                            >  SRR4302543.244836/1‑94 (MQ=60)

                                                  ATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGG                                            >  SRR4302543.1166264/1‑94 (MQ=60)

                                                   TAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGA                                           <  SRR4302543.7033392/94‑1 (MQ=60)

                                                   TAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGA                                           <  SRR4302543.3294930/94‑1 (MQ=60)

                                                     ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                         <  SRR4302543.7377060/94‑1 (MQ=60)

                                                     ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                         >  SRR4302543.528206/1‑94 (MQ=60)

                                                     ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                         <  SRR4302543.7943717/94‑1 (MQ=60)

                                                     ACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTCGGGAAC                                         <  SRR4302543.7157773/94‑1 (MQ=60)

                                                     ACAAACGCGGGAAATTACAACTCACCGTTACGCAGCCACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAAC                                         <  SRR4302543.5706903/94‑1 (MQ=60)

                                                      CAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACG                                        >  SRR4302543.3472947/1‑94 (MQ=60)

                                                      CAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACG                                        <  SRR4302543.869172/94‑1 (MQ=60)

                                                       AAACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGA                                       >  SRR4302543.7477409/1‑94 (MQ=60)

                                                        AACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAG                                      <  SRR4302543.1025200/94‑1 (MQ=60)

                                                        AACGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAG                                      >  SRR4302543.2314041/1‑94 (MQ=60)

                                                          CGCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAGCTTATTGGGGAACGAGTA                                    <  SRR4302543.7995681/94‑1 (MQ=60)

                                                           GCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAA                                   >  SRR4302543.2904765/1‑94 (MQ=60)

                                                           GCGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAA                                   <  SRR4302543.5744766/94‑1 (MQ=60)

                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302543.2402654/94‑1 (MQ=60)

                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302543.7420921/94‑1 (MQ=60)

                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  >  SRR4302543.5985799/1‑94 (MQ=60)

                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  >  SRR4302543.1601346/1‑94 (MQ=60)

                                                            CGGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAAT                                  <  SRR4302543.5259900/94‑1 (MQ=60)

                                                             GGGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATG                                 >  SRR4302543.3390036/1‑94 (MQ=60)

                                                              GGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGT                                >  SRR4302543.5367736/1‑94 (MQ=60)

                                                              GGAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGT                                <  SRR4302543.823516/94‑1 (MQ=60)

                                                               GAAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTC                               <  SRR4302543.2810901/94‑1 (MQ=60)

                                                                AAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGTGAACGAGTAATGTCG                              >  SRR4302543.7371332/1‑94 (MQ=60)

                                                                AAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCG                              >  SRR4302543.2995352/1‑94 (MQ=60)

                                                                AAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCG                              >  SRR4302543.5901860/1‑94 (MQ=60)

                                                                AAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCG                              >  SRR4302543.5044901/1‑94 (MQ=60)

                                                                AAATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTAGTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCG                              <  SRR4302543.6535034/94‑1 (MQ=60)

                                                                 AATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGA                             >  SRR4302543.1329888/1‑94 (MQ=60)

                                                                 AATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGA                             >  SRR4302543.7284236/1‑94 (MQ=60)

                                                                 AATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGA                             >  SRR4302543.1356813/1‑94 (MQ=60)

                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            <  SRR4302543.6052224/94‑1 (MQ=60)

                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            <  SRR4302543.2282792/94‑1 (MQ=60)

                                                                  ATTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGAT                            <  SRR4302543.2843131/94‑1 (MQ=60)

                                                                   TTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATG                           <  SRR4302543.3780330/94‑1 (MQ=60)

                                                                   TTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATG                           <  SRR4302543.2343483/94‑1 (MQ=60)

                                                                   TTACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATG                           >  SRR4302543.3862999/1‑94 (MQ=60)

                                                                    TACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGA                          <  SRR4302543.481073/94‑1 (MQ=60)

                                                                     ACAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAG                         >  SRR4302543.4686456/1‑94 (MQ=60)

                                                                      CAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGC                        <  SRR4302543.6954837/94‑1 (MQ=60)

                                                                      CAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGC                        >  SRR4302543.4462029/1‑94 (MQ=60)

                                                                      CAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGC                        >  SRR4302543.2981069/1‑94 (MQ=60)

                                                                      CAACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGA                        >  SRR4302543.6067033/1‑94 (MQ=60)

                                                                        ACTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAA                      >  SRR4302543.3320655/1‑94 (MQ=60)

                                                                         CTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAT                     <  SRR4302543.5439583/94‑1 (MQ=60)

                                                                         CTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAT                     >  SRR4302543.7797069/1‑94 (MQ=60)

                                                                         CTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAT                     <  SRR4302543.7554720/94‑1 (MQ=60)

                                                                         CTCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAAT                     >  SRR4302543.4509776/1‑94 (MQ=60)

                                                                          TCACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATT                    <  SRR4302543.6693651/94‑1 (MQ=60)

                                                                            CCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCC                  <  SRR4302543.4054811/94‑1 (MQ=60)

                                                                            CCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCC                  <  SRR4302543.3382869/94‑1 (MQ=60)

                                                                            CCCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCC                  <  SRR4302543.4876409/94‑1 (MQ=60)

                                                                            ACCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCC                  <  SRR4302543.142285/94‑1 (MQ=60)

                                                                             CCGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCA                 <  SRR4302543.608955/94‑1 (MQ=60)

                                                                              CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG                <  SRR4302543.6493951/94‑1 (MQ=60)

                                                                              CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG                <  SRR4302543.3974790/94‑1 (MQ=60)

                                                                              CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG                >  SRR4302543.4635893/1‑94 (MQ=60)

                                                                              CGTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAG                >  SRR4302543.1227/1‑94 (MQ=60)

                                                                               GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG               >  SRR4302543.3778858/1‑94 (MQ=60)

                                                                               GTTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGG               <  SRR4302543.6361539/94‑1 (MQ=60)

                                                                                TTACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGC              >  SRR4302543.5793875/1‑94 (MQ=60)

                                                                                 TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT             >  SRR4302543.7246905/1‑94 (MQ=60)

                                                                                 TACTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCT             <  SRR4302543.6467218/94‑1 (MQ=60)

                                                                                   CTCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGG           >  SRR4302543.7262599/1‑94 (MQ=60)

                                                                                    TCAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGA          <  SRR4302543.1460113/94‑1 (MQ=60)

                                                                                     CAGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGAT         <  SRR4302543.1914408/94‑1 (MQ=60)

                                                                                      AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT        >  SRR4302543.5278017/1‑94 (MQ=60)

                                                                                      AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT        >  SRR4302543.3987577/1‑94 (MQ=60)

                                                                                      AGCAACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATT        >  SRR4302543.3987576/1‑94 (MQ=60)

                                                                                         AACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAA     <  SRR4302543.4956088/94‑1 (MQ=60)

                                                                                         AACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAA     >  SRR4302543.681125/1‑94 (MQ=60)

                                                                                          ACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAGAT    >  SRR4302543.2343705/1‑94 (MQ=60)

                                                                                          ACCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAAT    >  SRR4302543.2918699/1‑94 (MQ=60)

                                                                                          ACCCGGGCGCACATCAACACTGTATTGGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAAT    <  SRR4302543.5422898/94‑1 (MQ=60)

                                                                                           CCCGGGCGCACATCAACACTTGATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA   <  SRR4302543.2471302/94‑1 (MQ=60)

                                                                                           CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA   <  SRR4302543.4839333/94‑1 (MQ=60)

                                                                                           CCCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATA   <  SRR4302543.2471303/94‑1 (MQ=60)

                                                                                            CCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  <  SRR4302543.2238141/94‑1 (MQ=60)

                                                                                            CCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  >  SRR4302543.4697098/1‑94 (MQ=60)

                                                                                            CCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  <  SRR4302543.4926450/94‑1 (MQ=60)

                                                                                            CCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  >  SRR4302543.2895103/1‑94 (MQ=60)

                                                                                            CCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  <  SRR4302543.6775950/94‑1 (MQ=60)

CGGAGTTATTCAGGTTAAGCCGAAATTCACCGACTATTACAACCTCGCTTATAACAAACGCGGGAAATTACAACTCACCGTTACTCAGCAACTCGGGCGCACATCAACACTGTATTTGAGTGGTAGCCATCAAACTTATTGGGGAACGAGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATAC  >  NC_000913/4544182‑4544367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`