Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,604,832 |
A→G |
R146R (CGT→CGC) |
yjjT ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,604,832 | 0 | A | G | 99.4%
| 555.9
/ ‑4.6
| 178 | R146R (CGT→CGC) | yjjT | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (93/84); total (93/85) |
| Fisher's exact test for biased strand distribution p-value = 4.78e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.05e-01 |
Only 100 of 193 total aligned reads displayed.
AAACACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGACGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCC > NC_000913/4604742‑4604921
|
aaaCACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAggcg > 1:3554393/1‑93 (MQ=255)
aaCACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAggcga > 1:1305637/1‑93 (MQ=255)
aaCACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAggcga > 1:1641635/1‑93 (MQ=255)
cAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAAt < 1:1515990/93‑1 (MQ=255)
cAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAAt < 2:4144683/93‑1 (MQ=255)
cAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAAt > 2:190949/1‑93 (MQ=255)
aGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATa < 1:1352098/93‑1 (MQ=255)
ggCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATag > 1:4486249/1‑93 (MQ=255)
cAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATagag > 1:4421018/1‑93 (MQ=255)
aGCGTTTTGGCCGTCAGGCCATCGACGCTGTATTCACCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAgg < 2:350764/93‑1 (MQ=255)
aGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAgg < 1:3674761/93‑1 (MQ=255)
gCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGc > 2:529963/1‑93 (MQ=255)
gTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCca < 1:316975/93‑1 (MQ=255)
gTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCca > 1:3582397/1‑93 (MQ=255)
ttttGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCcac > 2:285967/1‑93 (MQ=255)
ttttGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCcaa > 2:1231584/1‑92 (MQ=255)
tttGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCcaca > 1:3723509/1‑93 (MQ=255)
tGACCGTCATGCCATCGACGCTGTATGCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGc < 2:1780799/93‑1 (MQ=255)
tGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGc < 1:2652806/93‑1 (MQ=255)
aCCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGcga > 1:4308789/1‑93 (MQ=255)
ccGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGcgac > 1:4567173/1‑93 (MQ=255)
ccGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGcgac > 2:2816978/1‑93 (MQ=255)
ccGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGcgac < 1:757501/93‑1 (MQ=255)
gTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCTAATACCGGCTGTTTTTCCATGCGACCAAAATAGAGGCCACAGcgacga > 2:4208748/1‑93 (MQ=255)
gTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGcgacga > 2:243923/1‑93 (MQ=255)
tCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAg < 2:122200/93‑1 (MQ=255)
cAGTCCATCCACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAgc < 1:2643923/93‑1 (MQ=255)
aGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAgcg > 2:1623472/1‑93 (MQ=255)
ggCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAgcgc < 1:2583864/93‑1 (MQ=255)
ggCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAgcgc < 2:4405588/93‑1 (MQ=255)
ccATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTg > 1:4624622/1‑93 (MQ=255)
cATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGt > 2:3523571/1‑93 (MQ=255)
aTCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTc < 1:31860/93‑1 (MQ=255)
aTCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTc < 2:2772868/93‑1 (MQ=255)
aTCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTc > 2:3591564/1‑93 (MQ=255)
aTCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTc > 2:389395/1‑93 (MQ=255)
cGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGa > 1:1061053/1‑93 (MQ=255)
gACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGAc > 2:2340569/1‑93 (MQ=255)
gACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGAc > 1:3919058/1‑93 (MQ=255)
gACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTACCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGAc < 2:3639244/93‑1 (MQ=255)
aCGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACt < 1:648960/93‑1 (MQ=255)
aCGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACt < 1:4450135/93‑1 (MQ=255)
gCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTTCAGGCGACCAAAATAGAGGCCACAGCGACGACCGCGGCTGACttt > 2:2993086/1‑93 (MQ=255)
gCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACttt > 1:3424396/1‑93 (MQ=255)
cTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTa > 2:895629/1‑93 (MQ=255)
cTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTa > 2:4105578/1‑93 (MQ=255)
cTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTa > 1:4473917/1‑93 (MQ=255)
cTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTa < 1:2607990/93‑1 (MQ=255)
gTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTAtt > 2:3920301/1‑93 (MQ=255)
aTTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCa < 2:4160039/93‑1 (MQ=255)
aTTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCa > 1:2023613/1‑93 (MQ=255)
aTTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCa > 2:4535615/1‑93 (MQ=255)
ttCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCaa < 1:3100909/93‑1 (MQ=255)
cGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACg < 1:3283058/93‑1 (MQ=255)
cGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACg < 2:1365069/93‑1 (MQ=255)
ccccAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGgc < 2:61742/93‑1 (MQ=255)
ccccAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGgc < 1:2419036/93‑1 (MQ=255)
aGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCAt > 2:4634578/1‑93 (MQ=255)
aGAATTCCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCAt < 1:543244/93‑1 (MQ=255)
aaTTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATaa < 1:3991445/93‑1 (MQ=255)
tttCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATc > 1:841729/1‑93 (MQ=255)
tttCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATc > 1:3133784/1‑93 (MQ=255)
tttCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATc < 2:1059865/93‑1 (MQ=255)
ttgctcCGCATCAAATACCGGCTGTGTTGCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATc < 1:2404994/90‑1 (MQ=255)
tcCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGcc > 1:2176641/1‑93 (MQ=255)
ccGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCa < 2:1020807/93‑1 (MQ=255)
ccGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCa < 2:3786660/93‑1 (MQ=255)
gCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGc < 1:4283035/93‑1 (MQ=255)
cATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCa < 1:3404496/93‑1 (MQ=255)
aTCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCTACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCAt > 2:4547968/1‑93 (MQ=255)
aTCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCAt > 2:2792588/1‑93 (MQ=255)
aTCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCAt > 1:1772001/1‑93 (MQ=255)
tCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATc > 2:2264833/1‑93 (MQ=255)
tCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATc > 1:1376916/1‑93 (MQ=255)
tCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATc > 1:987126/1‑93 (MQ=255)
tCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATc < 1:4153494/93‑1 (MQ=255)
cAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCt > 2:1279845/1‑93 (MQ=255)
aaaTACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTg > 1:1191721/1‑93 (MQ=255)
aaaTACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTg > 2:741804/1‑93 (MQ=255)
aaTACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGc < 2:272272/93‑1 (MQ=255)
aaTACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGc < 1:3783792/93‑1 (MQ=255)
aaTACCGGCTGTTTTTCCAGGCGACAAAAATAGAGGCCACAGCGACGAACGCTGTCGACTTTATTCAACGGCGAATAATCTGCCAGCATCTGc > 1:41170/1‑93 (MQ=255)
aTACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCt > 2:4295481/1‑93 (MQ=255)
ttctggCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTc < 2:1431446/89‑1 (MQ=255)
tACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTc < 1:1104441/93‑1 (MQ=255)
tACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTc > 1:4666073/1‑93 (MQ=255)
ccGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCgg < 2:4053336/93‑1 (MQ=255)
ccGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCgg > 1:71946/1‑93 (MQ=255)
ccGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCgg > 1:609301/1‑93 (MQ=255)
cgtcTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGgc < 2:3705438/90‑1 (MQ=255)
cGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGgc > 2:3842083/1‑93 (MQ=255)
ggCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGgcg > 1:1906526/1‑93 (MQ=255)
gCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGgcgc > 2:819846/1‑93 (MQ=255)
cTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCt > 1:195686/1‑93 (MQ=255)
cTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCt > 1:1148991/1‑93 (MQ=255)
tGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTg > 1:3336633/1‑93 (MQ=255)
tGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTg > 2:1887592/1‑93 (MQ=255)
tGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTg > 1:3872119/1‑93 (MQ=255)
ccAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCAcgc > 2:2586968/1‑93 (MQ=255)
cAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCAcgcc > 1:3474536/1‑93 (MQ=255)
|
AAACACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGACGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCC > NC_000913/4604742‑4604921
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTAAACACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGACGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCCGCT > NC_000913/4604739‑4604924
|
GCTAAACACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGG < SRR4302535.826583/94‑1 (MQ=60)
TAAACACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCG > SRR4302535.3579051/1‑94 (MQ=60)
AAACACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGA > SRR4302535.1314957/1‑94 (MQ=60)
AAACACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGA > SRR4302535.1653502/1‑94 (MQ=60)
CGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAA < SRR4302535.893997/94‑1 (MQ=60)
CGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAA > SRR4302535.2619787/1‑94 (MQ=60)
GCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAA < SRR4302535.1842909/94‑1 (MQ=60)
CCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAAT < SRR4302535.2263630/94‑1 (MQ=60)
CAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATA < SRR4302535.3162308/94‑1 (MQ=60)
CAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATA < SRR4302535.1526909/94‑1 (MQ=60)
AGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAG > SRR4302535.4073151/1‑94 (MQ=60)
AGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAG > SRR4302535.4517044/1‑94 (MQ=60)
AGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAG < SRR4302535.1361775/94‑1 (MQ=60)
GGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGA < SRR4302535.72595/94‑1 (MQ=60)
GCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAG > SRR4302535.4451292/1‑94 (MQ=60)
GCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAG < SRR4302535.3352621/94‑1 (MQ=60)
AGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGC < SRR4302535.3700205/94‑1 (MQ=60)
GCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCC < SRR4302535.3152095/94‑1 (MQ=60)
CGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCA > SRR4302535.3607245/1‑94 (MQ=60)
GTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCAC < SRR4302535.319176/94‑1 (MQ=60)
GTGTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTGTCCAGGCGACCAAAATAGAGGCCAC > SRR4302535.4561349/1‑94 (MQ=60)
TTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACA > SRR4302535.3749303/1‑94 (MQ=60)
TTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGC < SRR4302535.398799/94‑1 (MQ=60)
TGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCG < SRR4302535.2671810/94‑1 (MQ=60)
TGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCG > SRR4302535.3459150/1‑94 (MQ=60)
TGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCG < SRR4302535.113434/94‑1 (MQ=60)
GACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGA > SRR4302535.4338267/1‑94 (MQ=60)
ACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGAC > SRR4302535.4598326/1‑94 (MQ=60)
CCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACG < SRR4302535.762830/94‑1 (MQ=60)
CGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGA > SRR4302535.3705273/1‑94 (MQ=60)
GTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAG < SRR4302535.3663420/94‑1 (MQ=60)
CAGTCCATCCACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCG < SRR4302535.2662859/94‑1 (MQ=60)
GGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCT < SRR4302535.2602426/94‑1 (MQ=60)
GGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCT < SRR4302535.4177506/94‑1 (MQ=60)
GCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTG > SRR4302535.4656024/1‑94 (MQ=60)
CATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTC < SRR4302535.3200596/94‑1 (MQ=60)
CATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTC > SRR4302535.3765200/1‑94 (MQ=60)
ATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCG < SRR4302535.32106/94‑1 (MQ=60)
TCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGA > SRR4302535.1068607/1‑94 (MQ=60)
CGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGAC > SRR4302535.3945862/1‑94 (MQ=60)
ACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTT < SRR4302535.653483/94‑1 (MQ=60)
ACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTT < SRR4302535.4480657/94‑1 (MQ=60)
ACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCGGTCGACTT > SRR4302535.783059/1‑94 (MQ=60)
CGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTT > SRR4302535.3448210/1‑94 (MQ=60)
GCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTA > SRR4302535.4504616/1‑94 (MQ=60)
CTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTAT < SRR4302535.2626704/94‑1 (MQ=60)
TGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATT > SRR4302535.3404822/1‑94 (MQ=60)
TGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATT < SRR4302535.2647931/94‑1 (MQ=60)
TGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATT > SRR4302535.4512619/1‑94 (MQ=60)
GTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTC > SRR4302535.4247487/1‑94 (MQ=60)
GTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTC < SRR4302535.1271360/94‑1 (MQ=60)
TATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCA > SRR4302535.2038197/1‑94 (MQ=60)
ATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGACGCCACCGCGACGAGCGCTGTCGACTTTATTCAC > SRR4302535.473918/1‑94 (MQ=60)
TTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAAC < SRR4302535.3122496/94‑1 (MQ=60)
TTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAAC < SRR4302535.4465378/94‑1 (MQ=60)
TCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACG < SRR4302535.1718822/94‑1 (MQ=60)
CGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGG < SRR4302535.3305861/94‑1 (MQ=60)
CGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGG > SRR4302535.327544/1‑94 (MQ=60)
CGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGG < SRR4302535.2966280/94‑1 (MQ=60)
GCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGC < SRR4302535.4338504/94‑1 (MQ=60)
CCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCG < SRR4302535.2436453/94‑1 (MQ=60)
CCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGC > SRR4302535.1178738/1‑94 (MQ=60)
CCAGAATTTCTCTGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCA > SRR4302535.2290070/1‑94 (MQ=60)
AGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATA > SRR4302535.5528/1‑94 (MQ=60)
AGAATTCCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATA < SRR4302535.547042/94‑1 (MQ=60)
GAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAA > SRR4302535.4337618/1‑94 (MQ=60)
GAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAA < SRR4302535.4660425/94‑1 (MQ=60)
AATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAAT < SRR4302535.4018746/94‑1 (MQ=60)
ATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATC > SRR4302535.3155603/1‑94 (MQ=60)
ATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATC > SRR4302535.3888033/1‑94 (MQ=60)
ATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATC > SRR4302535.847634/1‑94 (MQ=60)
TTGCTCCGCATCAAATACCGGCTGTGTTGCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCT < SRR4302535.2422301/94‑1 (MQ=60)
TCTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGC < SRR4302535.1981035/94‑1 (MQ=60)
CTCCGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCC > SRR4302535.2192197/1‑94 (MQ=60)
CGCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACCTTATTCAACGGCGCATAATCTGCCAGC > SRR4302535.1969617/1‑94 (MQ=60)
GCATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCA < SRR4302535.4312337/94‑1 (MQ=60)
CATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGAGTTTATTCAACGGCGCATAATCTGCCAGCAT > SRR4302535.2095588/1‑94 (MQ=60)
CATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCAT > SRR4302535.1784842/1‑94 (MQ=60)
CATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCAT < SRR4302535.3428187/94‑1 (MQ=60)
ATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATC > SRR4302535.994139/1‑94 (MQ=60)
ATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATC < SRR4302535.3598630/94‑1 (MQ=60)
ATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATC > SRR4302535.1386745/1‑94 (MQ=60)
ATCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATC > SRR4302535.2665663/1‑94 (MQ=60)
TCAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCT < SRR4302535.4181933/94‑1 (MQ=60)
CAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTG > SRR4302535.1200254/1‑94 (MQ=60)
CAAATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTG > SRR4302535.1564436/1‑94 (MQ=60)
AAATACCGGCTGTTTTTCCAGGCGACAAAAATAGAGGCCACAGCGACGAACGCTGTCGACTTTATTCAACGGCGAATAATCTGCCAGCATCTGC > SRR4302535.41482/1‑94 (MQ=60)
AATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCT < SRR4302535.3809899/94‑1 (MQ=60)
AATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCT < SRR4302535.1497563/94‑1 (MQ=60)
ATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTC < SRR4302535.131533/94‑1 (MQ=60)
ATACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTC > SRR4302535.4697614/1‑94 (MQ=60)
ATACCGGCTGTTTTGCCAGGCGACCAAAAGAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTC < SRR4302535.136497/94‑1 (MQ=60)
TACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCG < SRR4302535.1112331/94‑1 (MQ=60)
TACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCG < SRR4302535.621314/94‑1 (MQ=60)
ACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGG > SRR4302535.72471/1‑94 (MQ=60)
ACCGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGG > SRR4302535.613549/1‑94 (MQ=60)
CGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCG > SRR4302535.1920248/1‑94 (MQ=60)
CGGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCG > SRR4302535.668918/1‑94 (MQ=60)
GGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGC > SRR4302535.4624520/1‑94 (MQ=60)
GGCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGC > SRR4302535.3927535/1‑94 (MQ=60)
GCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCT > SRR4302535.1157174/1‑94 (MQ=60)
GCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCT > SRR4302535.197033/1‑94 (MQ=60)
GCTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCT < SRR4302535.3431372/94‑1 (MQ=60)
CTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTG > SRR4302535.3898728/1‑94 (MQ=60)
CTGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTG > SRR4302535.3359871/1‑94 (MQ=60)
TGTTTTTCCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGC > SRR4302535.2533675/1‑94 (MQ=60)
CCAGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCC > SRR4302535.3498678/1‑94 (MQ=60)
AGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCCGC > SRR4302535.3208122/1‑94 (MQ=60)
AGGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTAATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCCGC > SRR4302535.2534448/1‑94 (MQ=60)
GGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCCGCT < SRR4302535.502322/94‑1 (MQ=60)
GGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCCGCT < SRR4302535.225525/94‑1 (MQ=60)
GGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCCGCT < SRR4302535.4179728/94‑1 (MQ=60)
GGCGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCACCATCTGCTCGGCGCTGCGCACGCCGCT < SRR4302535.4059966/94‑1 (MQ=60)
GGCGACAAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCCGCT < SRR4302535.126644/94‑1 (MQ=60)
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GCTAAACACGCCAGGCAGCGTTTTGACCGTCAGGCCATCGACGCTGTATTCGCCCCAGAATTTCTCCGCATCAAATACCGGCTGTTTTTCCAGACGACCAAAATAGAGGCCACAGCGACGAGCGCTGTCGACTTTATTCAACGGCGCATAATCTGCCAGCATCTGCTCGGCGCTGCGCACGCCGCT > NC_000913/4604739‑4604924
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
