Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 671,943 T→C A688A (GCA→GCG)  leuS ← leucine tRNA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913671,9430TC99.4% 1116.4 / ‑4.8 346A688A (GCA→GCG) leuSleucine tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (186/158);  total (187/159)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01

Only 100 of 360 total aligned reads displayed.

ACGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGTGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTG  >  NC_000913/671853‑672032
                                                                                          |                                                                                         
  ggCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCCGCGCATCAACGTTCAGCGCCg                                                                                       >  1:8617436/1‑93 (MQ=255)
   gCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATTGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGcgccgc                                                                                      <  2:5959842/93‑1 (MQ=255)
   gCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGcgccgc                                                                                      >  1:6138265/1‑93 (MQ=255)
     cGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGcgccgcca                                                                                    >  1:4843393/1‑91 (MQ=255)
      gATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAAc                                                                                   >  2:8821314/1‑93 (MQ=255)
      gATATCATCGGTCACTCGAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCAGCAACGTTCAGCGTCGCAAc                                                                                   >  2:8952664/1‑93 (MQ=255)
        tatCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACAt                                                                                 >  2:7945246/1‑93 (MQ=255)
        tatCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACAt                                                                                 >  1:5183858/1‑93 (MQ=255)
         atcatcGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATc                                                                                >  1:4388538/1‑93 (MQ=255)
           catcGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCAc                                                                              >  2:8048886/1‑93 (MQ=255)
            atcGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCAcc                                                                             >  2:7742274/1‑93 (MQ=255)
            atcGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCAcc                                                                             >  2:8564903/1‑93 (MQ=255)
             tcGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCt                                                                            <  2:5585248/93‑1 (MQ=255)
                gTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCtttt                                                                         >  2:2933699/1‑93 (MQ=255)
                 tCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCATCGTTCAGCGCCGCAACATCACCTTTTg                                                                        >  1:3110940/1‑93 (MQ=255)
                 tCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTg                                                                        >  1:3977280/1‑93 (MQ=255)
                  cACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGc                                                                       <  1:4710514/93‑1 (MQ=255)
                    cTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtg                                                                     >  2:7409964/1‑93 (MQ=255)
                    cTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtg                                                                     <  2:6655693/93‑1 (MQ=255)
                     tttAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgt                                                                    <  1:8010048/93‑1 (MQ=255)
                     tttAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgt                                                                    <  2:8288598/93‑1 (MQ=255)
                     tttAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgt                                                                    <  1:1577173/93‑1 (MQ=255)
                     tttAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgt                                                                    >  1:7428609/1‑93 (MQ=255)
                     tttAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgt                                                                    <  1:3534689/93‑1 (MQ=255)
                     tttAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgt                                                                    >  1:8495441/1‑93 (MQ=255)
                       tAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgtgt                                                                  <  2:1968484/93‑1 (MQ=255)
                       tAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgtgt                                                                  <  1:2248554/93‑1 (MQ=255)
                        aGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCtgtgtg                                                                 >  1:5398112/1‑93 (MQ=255)
                         gCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGc                                                                <  2:3184137/93‑1 (MQ=255)
                         gCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGc                                                                >  1:9469262/1‑93 (MQ=255)
                         gCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGc                                                                <  1:3681948/93‑1 (MQ=255)
                         gCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGc                                                                <  2:208599/93‑1 (MQ=255)
                         gCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGc                                                                >  2:9106074/1‑93 (MQ=255)
                          cGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCt                                                               <  1:4106637/93‑1 (MQ=255)
                          cGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCt                                                               <  2:7145539/93‑1 (MQ=255)
                           gATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTc                                                              >  2:8895035/1‑93 (MQ=255)
                            aTCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCg                                                             >  2:9608254/1‑93 (MQ=255)
                            aTCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCg                                                             >  1:920867/1‑93 (MQ=255)
                             tCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGt                                                            >  2:6165311/1‑93 (MQ=255)
                               gTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTaa                                                          <  1:9988291/93‑1 (MQ=255)
                               gTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTaa                                                          <  1:2592667/93‑1 (MQ=255)
                                ttttATGCACATCGCGACGCGGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTaaa                                                         >  2:9685953/1‑93 (MQ=255)
                                ttttATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTaaa                                                         <  1:7219835/93‑1 (MQ=255)
                                  ttATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAAcc                                                       <  2:5436207/93‑1 (MQ=255)
                                  ttATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAAcc                                                       <  1:2829195/93‑1 (MQ=255)
                                   tATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCa                                                      <  1:8834724/93‑1 (MQ=255)
                                    aTGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAg                                                     <  1:919113/93‑1 (MQ=255)
                                    aTGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAg                                                     >  2:916788/1‑93 (MQ=255)
                                     tGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGt                                                    >  1:3784589/1‑93 (MQ=255)
                                     tGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGt                                                    >  2:2504147/1‑93 (MQ=255)
                                      gCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGtt                                                   <  2:8211488/93‑1 (MQ=255)
                                      gCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGtt                                                   >  2:4426366/1‑93 (MQ=255)
                                      gCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGCAAACCAGtt                                                   >  2:8361909/1‑93 (MQ=255)
                                          aTCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCa                                               >  2:4773605/1‑93 (MQ=255)
                                           tCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAg                                              >  1:6914682/1‑93 (MQ=255)
                                               gACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGacac                                          <  2:5214990/93‑1 (MQ=255)
                                               gACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGacac                                          >  2:5051658/1‑93 (MQ=255)
                                               gACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGacac                                          >  1:124031/1‑93 (MQ=255)
                                               gACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGacac                                          >  1:3270835/1‑93 (MQ=255)
                                                aCGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACg                                         >  2:3729697/1‑93 (MQ=255)
                                                aCGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACg                                         >  1:5244217/1‑93 (MQ=255)
                                                aCGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACg                                         <  1:8219980/93‑1 (MQ=255)
                                                   cAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGttt                                      >  1:6435713/1‑93 (MQ=255)
                                                    aGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTc                                     <  2:3309164/93‑1 (MQ=255)
                                                    aGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTc                                     <  2:8702956/93‑1 (MQ=255)
                                                    aGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTc                                     >  2:7491220/1‑93 (MQ=255)
                                                     gcgcTTTCTGATTTTCAGTCAGCTCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCa                                    <  2:6936539/93‑1 (MQ=255)
                                                     gcgcTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCa                                    <  1:2388360/93‑1 (MQ=255)
                                                       gcTTTCTGTTTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACACGTCTCCAGACACGTTTCAgg                                  >  1:2038094/1‑93 (MQ=255)
                                                        cTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGa                                 >  2:4350090/1‑93 (MQ=255)
                                                        cTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTAAGGa                                 >  1:5789215/1‑93 (MQ=255)
                                                          ttCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAg                               <  1:10035299/93‑1 (MQ=255)
                                                          ttCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAg                               >  2:3875222/1‑93 (MQ=255)
                                                          ttCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAg                               <  2:6794495/93‑1 (MQ=255)
                                                            cTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCg                             >  1:5901919/1‑93 (MQ=255)
                                                             tGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCgg                            <  1:9659261/93‑1 (MQ=255)
                                                             tGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCgg                            >  2:3927720/1‑93 (MQ=255)
                                                              gATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACTTTTCGCTGTGTGCTCGTAAACACGTTTACAGACACGGTTAAGGAAgggct                           >  1:291546/1‑89 (MQ=255)
                                                               aTTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGtt                          <  2:2645137/93‑1 (MQ=255)
                                                                ttttCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTa                         <  2:9831342/93‑1 (MQ=255)
                                                                 tttCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAg                        >  2:5840230/1‑93 (MQ=255)
                                                                  ttCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGc                       >  2:1672811/1‑93 (MQ=255)
                                                                   tcagtcagCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGcc                      >  1:2692020/1‑93 (MQ=255)
                                                                     agtcagCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGcccc                    >  2:269519/1‑93 (MQ=255)
                                                                     agtcagCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGcccc                    <  1:4035241/93‑1 (MQ=255)
                                                                       tcagCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCtt                  >  1:7558068/1‑93 (MQ=255)
                                                                          gcgcATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCca               <  2:4880079/93‑1 (MQ=255)
                                                                             cATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCacac            >  2:9275355/1‑93 (MQ=255)
                                                                             cATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCacac            >  2:5800638/1‑93 (MQ=255)
                                                                              aTCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACAcc           >  2:7657474/1‑93 (MQ=255)
                                                                               tCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCg          >  1:7742400/1‑93 (MQ=255)
                                                                               tCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCg          >  1:5109134/1‑93 (MQ=255)
                                                                               tCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCg          >  2:3585743/1‑93 (MQ=255)
                                                                                cAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCgg         <  2:5108572/93‑1 (MQ=255)
                                                                                 aaCGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGa        >  2:1247796/1‑93 (MQ=255)
                                                                                 aaCGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGa        <  1:1793906/93‑1 (MQ=255)
                                                                                 aaCGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGa        <  2:1431293/93‑1 (MQ=255)
                                                                                 aaCGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGa        >  2:1477100/1‑93 (MQ=255)
                                                                                     ttCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTcc    >  1:9786059/1‑93 (MQ=255)
                                                                                       cAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTg  >  2:4013661/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGTGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTG  >  NC_000913/671853‑672032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACGACGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGTGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTGCCAT  >  NC_000913/671850‑672036
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ACGACGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGC                                                                                               <  SRR4302540.4845739/94‑1 (MQ=60)
 CGACGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCG                                                                                              <  SRR4302540.6838364/94‑1 (MQ=60)
 CGACGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCG                                                                                              <  SRR4302540.6102365/94‑1 (MQ=60)
    CGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCCGCGCATCAACGTTCAGCGCCG                                                                                           >  SRR4302540.8717548/1‑94 (MQ=60)
    CGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCG                                                                                           >  SRR4302540.831966/1‑94 (MQ=60)
     GGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGC                                                                                          >  SRR4302540.6206629/1‑94 (MQ=60)
      GCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCA                                                                                         <  SRR4302540.4407087/94‑1 (MQ=60)
       CCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCCA                                                                                        >  SRR4302540.4895273/1‑94 (MQ=60)
       CCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAA                                                                                        >  SRR4302540.7109587/1‑94 (MQ=60)
       CCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAA                                                                                        >  SRR4302540.4895275/1‑94 (MQ=60)
        CGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAAC                                                                                       >  SRR4302540.5348788/1‑94 (MQ=60)
         GATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACA                                                                                      >  SRR4302540.3160321/1‑94 (MQ=60)
         GATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACA                                                                                      <  SRR4302540.858417/94‑1 (MQ=60)
          ATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACAT                                                                                     >  SRR4302540.5240291/1‑94 (MQ=60)
          ATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACAT                                                                                     <  SRR4302540.5955661/94‑1 (MQ=60)
           TATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATC                                                                                    >  SRR4302540.4436169/1‑94 (MQ=60)
                  GGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTT                                                                             <  SRR4302540.8697691/94‑1 (MQ=60)
                   GTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCATCGTTCAGCGCCGCAACATCACCTTTTG                                                                            >  SRR4302540.3144970/1‑94 (MQ=60)
                   GTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTG                                                                            >  SRR4302540.4020128/1‑94 (MQ=60)
                   GTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTG                                                                            >  SRR4302540.4229104/1‑94 (MQ=60)
                   GTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTG                                                                            >  SRR4302540.5270863/1‑94 (MQ=60)
                   GTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTG                                                                            >  SRR4302540.3144969/1‑94 (MQ=60)
                     CACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCT                                                                          <  SRR4302540.4760855/94‑1 (MQ=60)
                     CACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCT                                                                          <  SRR4302540.1398832/94‑1 (MQ=60)
                       CTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGT                                                                        >  SRR4302540.9966785/1‑94 (MQ=60)
                       CTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGT                                                                        >  SRR4302540.7511363/1‑94 (MQ=60)
                       CTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGT                                                                        >  SRR4302540.8594159/1‑94 (MQ=60)
                       CTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGT                                                                        >  SRR4302540.910509/1‑94 (MQ=60)
                       CTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGT                                                                        >  SRR4302540.7733804/1‑94 (MQ=60)
                       CTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGT                                                                        >  SRR4302540.7533830/1‑94 (MQ=60)
                       CTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTCT                                                                        >  SRR4302540.7511365/1‑94 (MQ=60)
                        TTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTG                                                                       <  SRR4302540.1594424/94‑1 (MQ=60)
                        TTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTG                                                                       <  SRR4302540.8103236/94‑1 (MQ=60)
                        TTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTG                                                                       <  SRR4302540.3573277/94‑1 (MQ=60)
                         TTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGT                                                                      >  SRR4302540.2845228/1‑94 (MQ=60)
                         TTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGT                                                                      <  SRR4302540.3648467/94‑1 (MQ=60)
                          TAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTG                                                                     <  SRR4302540.2892822/94‑1 (MQ=60)
                          TAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTG                                                                     >  SRR4302540.2135427/1‑94 (MQ=60)
                          TAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTG                                                                     >  SRR4302540.5457462/1‑94 (MQ=60)
                          TAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTG                                                                     <  SRR4302540.2272700/94‑1 (MQ=60)
                           AGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGC                                                                    >  SRR4302540.9581583/1‑94 (MQ=60)
                            GCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCT                                                                   >  SRR4302540.9623272/1‑94 (MQ=60)
                            GCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCT                                                                   <  SRR4302540.3722189/94‑1 (MQ=60)
                             CGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTC                                                                  >  SRR4302540.4065625/1‑94 (MQ=60)
                             CGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTC                                                                  <  SRR4302540.4150942/94‑1 (MQ=60)
                              GATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCG                                                                 >  SRR4302540.2400165/1‑94 (MQ=60)
                              GATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCG                                                                 >  SRR4302540.930583/1‑94 (MQ=60)
                              GATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCG                                                                 <  SRR4302540.6557343/94‑1 (MQ=60)
                               ATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGAGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGT                                                                >  SRR4302540.2838370/1‑94 (MQ=60)
                                 CGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAA                                                              >  SRR4302540.4062649/1‑94 (MQ=60)
                                  GTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAA                                                             >  SRR4302540.8171851/1‑94 (MQ=60)
                                  GTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAA                                                             >  SRR4302540.8072103/1‑94 (MQ=60)
                                  GTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAA                                                             <  SRR4302540.10104722/94‑1 (MQ=60)
                                  GTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAA                                                             <  SRR4302540.2620626/94‑1 (MQ=60)
                                  GTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAA                                                             <  SRR4302540.3516408/94‑1 (MQ=60)
                                   TTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAAC                                                            <  SRR4302540.7300305/94‑1 (MQ=60)
                                     TTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGTGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCA                                                          <  SRR4302540.3173401/94‑1 (MQ=60)
                                     TTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTACACCA                                                          >  SRR4302540.8736019/1‑94 (MQ=60)
                                     TTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCA                                                          >  SRR4302540.5281363/1‑94 (MQ=60)
                                     TTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCA                                                          <  SRR4302540.2859792/94‑1 (MQ=60)
                                     TTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCA                                                          <  SRR4302540.7308252/94‑1 (MQ=60)
                                      TATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAG                                                         <  SRR4302540.8936909/94‑1 (MQ=60)
                                       ATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGT                                                        <  SRR4302540.928808/94‑1 (MQ=60)
                                       ATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGT                                                        >  SRR4302540.3825862/1‑94 (MQ=60)
                                       ATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGT                                                        >  SRR4302540.63940/1‑94 (MQ=60)
                                        TGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTT                                                       <  SRR4302540.271442/94‑1 (MQ=60)
                                        TGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTT                                                       <  SRR4302540.4288922/94‑1 (MQ=60)
                                        TGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTT                                                       >  SRR4302540.3927476/1‑94 (MQ=60)
                                        TGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTT                                                       >  SRR4302540.2103755/1‑94 (MQ=60)
                                         GCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTT                                                      <  SRR4302540.9626476/94‑1 (MQ=60)
                                         GCACATCGCGACGCAGCGCCTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTT                                                      <  SRR4302540.9455148/94‑1 (MQ=60)
                                          CACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTC                                                     <  SRR4302540.9806678/94‑1 (MQ=60)
                                           ACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCC                                                    <  SRR4302540.4097258/94‑1 (MQ=60)
                                           ACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCC                                                    <  SRR4302540.3249723/94‑1 (MQ=60)
                                           ACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCC                                                    <  SRR4302540.5219778/94‑1 (MQ=60)
                                           ACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCC                                                    <  SRR4302540.6496892/94‑1 (MQ=60)
                                            CATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCA                                                   <  SRR4302540.7655728/94‑1 (MQ=60)
                                             ATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAG                                                  >  SRR4302540.7481903/1‑94 (MQ=60)
                                             ATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAG                                                  >  SRR4302540.6991625/1‑94 (MQ=60)
                                             ATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAG                                                  <  SRR4302540.5147572/94‑1 (MQ=60)
                                             ATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTCTTGCTGTGTGCTCGTAAACCAGTTTCCAG                                                  >  SRR4302540.3614105/1‑94 (MQ=60)
                                              TCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCACA                                                 >  SRR4302540.3508746/1‑94 (MQ=60)
                                               CGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCacgac                                                >  SRR4302540.6433472/1‑89 (MQ=60)
                                               CGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGAC                                                >  SRR4302540.1204895/1‑94 (MQ=60)
                                                 CGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACAC                                              <  SRR4302540.9838045/94‑1 (MQ=60)
                                                 CGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACAC                                              >  SRR4302540.125351/1‑94 (MQ=60)
                                                 CGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACAC                                              >  SRR4302540.3306536/1‑94 (MQ=60)
                                                 CGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACAC                                              <  SRR4302540.8962564/94‑1 (MQ=60)
                                                  GACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACG                                             <  SRR4302540.8604584/94‑1 (MQ=60)
                                                  GACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACG                                             >  SRR4302540.5301418/1‑94 (MQ=60)
                                                  GACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACG                                             >  SRR4302540.5301417/1‑94 (MQ=60)
                                                  GACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACG                                             <  SRR4302540.8093829/94‑1 (MQ=60)
                                                  GACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACG                                             >  SRR4302540.1633588/1‑94 (MQ=60)
                                                   ACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGT                                            <  SRR4302540.8315524/94‑1 (MQ=60)
                                                    CGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTT                                           <  SRR4302540.3730954/94‑1 (MQ=60)
                                                    CGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTT                                           >  SRR4302540.4826666/1‑94 (MQ=60)
                                                    CGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTT                                           >  SRR4302540.4964934/1‑94 (MQ=60)
                                                     GCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTT                                          <  SRR4302540.3977423/94‑1 (MQ=60)
                                                     GCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTT                                          >  SRR4302540.7330203/1‑94 (MQ=60)
                                                     GCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTT                                          <  SRR4302540.6693071/94‑1 (MQ=60)
                                                     GCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTT                                          >  SRR4302540.6507346/1‑94 (MQ=60)
                                                      CAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTC                                         >  SRR4302540.2757166/1‑94 (MQ=60)
                                                      CAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTC                                         <  SRR4302540.7033016/94‑1 (MQ=60)
                                                      CAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTC                                         >  SRR4302540.6657828/1‑94 (MQ=60)
                                                      CAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTC                                         <  SRR4302540.2650697/94‑1 (MQ=60)
                                                       AGCGTTTTCTGATTTTCAGTCAGCGTTTCAACGTTCTGTGCTGTAATATCACCTTTTGTTGTGTGCTCGTAATCCAGTTTCTAGATACGTTTCA                                        >  SRR4302540.9045930/1‑94 (MQ=32)
                                                       AGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCA                                        <  SRR4302540.9343569/94‑1 (MQ=60)
                                                       AGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCA                                        <  SRR4302540.2444516/94‑1 (MQ=60)
                                                        GCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAG                                       <  SRR4302540.2414102/94‑1 (MQ=60)
                                                        GCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAG                                       <  SRR4302540.4817220/94‑1 (MQ=60)
                                                         CGCTTTCTGTTTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACACGTCTCCAGACACGTTTCAGG                                      >  SRR4302540.2060063/1‑94 (MQ=60)
                                                         CGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGG                                      >  SRR4302540.2060062/1‑94 (MQ=60)
                                                         CGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGG                                      >  SRR4302540.2876847/1‑94 (MQ=60)
                                                         CGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGG                                      <  SRR4302540.5869699/94‑1 (MQ=60)
                                                          GCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGA                                     >  SRR4302540.407046/1‑94 (MQ=60)
                                                          GCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTAAGGA                                     >  SRR4302540.5853183/1‑94 (MQ=60)
                                                           CTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAA                                    >  SRR4302540.4667975/1‑94 (MQ=60)
                                                           CTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAA                                    <  SRR4302540.6173870/94‑1 (MQ=60)
                                                            TTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAG                                   <  SRR4302540.2334276/94‑1 (MQ=60)
                                                            TTTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAG                                   >  SRR4302540.3822236/1‑94 (MQ=60)
                                                             TTCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGC                                  <  SRR4302540.10152012/94‑1 (MQ=60)
                                                              TCTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCG                                 >  SRR4302540.5967093/1‑94 (MQ=60)
                                                               CTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGG                                <  SRR4302540.9302895/94‑1 (MQ=60)
                                                               CTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGG                                <  SRR4302540.9302897/94‑1 (MQ=60)
                                                               CTGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGG                                <  SRR4302540.64079/94‑1 (MQ=60)
                                                                TGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACTTTTCGCTGTGTGCTCGTAAACacgtttacagacacggttaaggaagggct                               >  SRR4302540.294427/1‑65 (MQ=60)
                                                                TGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGT                               <  SRR4302540.9772961/94‑1 (MQ=60)
                                                                TGATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGT                               >  SRR4302540.294426/1‑94 (MQ=60)
                                                                 GATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTT                              >  SRR4302540.182475/1‑94 (MQ=60)
                                                                  ATTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTA                             >  SRR4302540.5785435/1‑94 (MQ=60)
                                                                   TTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAG                            >  SRR4302540.9991851/1‑94 (MQ=60)
                                                                   TTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAG                            <  SRR4302540.6121362/94‑1 (MQ=60)
                                                                   TTTTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAG                            <  SRR4302540.3678022/94‑1 (MQ=60)
                                                                     TTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCC                          >  SRR4302540.2721096/1‑94 (MQ=60)
                                                                     TTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCC                          >  SRR4302540.4540210/1‑94 (MQ=60)
                                                                     TTCAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCAGTTAGCC                          >  SRR4302540.8823017/1‑94 (MQ=60)
                                                                       CAGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCC                        <  SRR4302540.9468362/94‑1 (MQ=60)
                                                                        AGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCT                       <  SRR4302540.4078753/94‑1 (MQ=60)
                                                                        AGTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCT                       <  SRR4302540.158647/94‑1 (MQ=60)
                                                                         GTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTT                      <  SRR4302540.2424909/94‑1 (MQ=60)
                                                                         GTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTT                      <  SRR4302540.5381711/94‑1 (MQ=60)
                                                                         GTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTT                      <  SRR4302540.5212888/94‑1 (MQ=60)
                                                                         GTCAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTT                      >  SRR4302540.7642819/1‑94 (MQ=60)
                                                                           CAGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCC                    <  SRR4302540.9853077/94‑1 (MQ=60)
                                                                            AGCGCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCA                   <  SRR4302540.5957899/94‑1 (MQ=60)
                                                                               GCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACAC                >  SRR4302540.871653/1‑94 (MQ=60)
                                                                               GCATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACAC                <  SRR4302540.3754952/94‑1 (MQ=60)
                                                                                CATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACC               >  SRR4302540.1970643/1‑94 (MQ=60)
                                                                                 ATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCG              >  SRR4302540.1671203/1‑94 (MQ=60)
                                                                                 ATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCG              >  SRR4302540.5164432/1‑94 (MQ=60)
                                                                                 ATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCG              >  SRR4302540.525349/1‑94 (MQ=60)
                                                                                 ATCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCG              >  SRR4302540.7832794/1‑94 (MQ=60)
                                                                                  TCAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGG             <  SRR4302540.8551464/94‑1 (MQ=60)
                                                                                   CAACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGA            <  SRR4302540.7675636/94‑1 (MQ=60)
                                                                                    AACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGAT           <  SRR4302540.1813407/94‑1 (MQ=60)
                                                                                    AACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGAT           <  SRR4302540.10048597/94‑1 (MQ=60)
                                                                                     ACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATT          >  SRR4302540.820703/1‑94 (MQ=60)
                                                                                     ACGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATT          <  SRR4302540.8232349/94‑1 (MQ=60)
                                                                                      CGTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTC         >  SRR4302540.1223956/1‑94 (MQ=60)
                                                                                       GTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCC        >  SRR4302540.9900725/1‑94 (MQ=60)
                                                                                       GTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCC        >  SRR4302540.153469/1‑94 (MQ=60)
                                                                                       GTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCC        >  SRR4302540.4722394/1‑94 (MQ=60)
                                                                                       GTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCC        >  SRR4302540.2451539/1‑94 (MQ=60)
                                                                                       GTTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCC        >  SRR4302540.4084444/1‑94 (MQ=60)
                                                                                        TTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCT       <  SRR4302540.5480912/94‑1 (MQ=60)
                                                                                        TTCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCT       >  SRR4302540.3087140/1‑94 (MQ=60)
                                                                                         TCAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTG      <  SRR4302540.2080962/94‑1 (MQ=60)
                                                                                          CAGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTGC     >  SRR4302540.9370900/1‑94 (MQ=60)
                                                                                           AGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCGCCTTCCACACCGGATTCCTGCC    >  SRR4302540.9210383/1‑94 (MQ=60)
                                                                                           AGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTGCC    <  SRR4302540.4163335/94‑1 (MQ=60)
                                                                                           AGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTGCC    <  SRR4302540.9523428/94‑1 (MQ=60)
                                                                                           AGCGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTCCAGGAAGCGGTTAGCCCCTTCCACACCGTATTGCTGCC    >  SRR4302540.8191000/1‑94 (MQ=60)
                                                                                            GCGCCGCAACATCACCTATTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTGCCA   <  SRR4302540.9061766/94‑1 (MQ=60)
                                                                                             CGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTGCCAT  >  SRR4302540.4053077/1‑94 (MQ=60)
                                                                                             |                                                                                             
ACGACGGCCGATATCATCGGTCACTTTAGCGATCGTTTTATGCACATCGCGACGCAGCGCTTTCTGATTTTCAGTCAGCGCATCAACGTTCAGTGCCGCAACATCACCTTTTGCTGTGTGCTCGTAAACCAGTTTCCAGACACGTTTCAGGAAGCGGTTAGCCCCTTCCACACCGGATTCCTGCCAT  >  NC_000913/671850‑672036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑