Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
867,645 |
(C)8→7 |
coding (870/1839 nt) |
b0829 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 867,638 | 0 | C | . | 81.3%
| 570.8
/ 145.2
| 211 | coding (863/1839 nt) | b0829 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (24/15); new base . (86/84); total (110/101) |
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 243 total aligned reads displayed.
GTTAGCTGCTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTT > NC_000913/867546‑867728
|
gTTAGCTGCTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTTAACATCCAGCGAAACAGG‑c < 2:838498/93‑1 (MQ=255)
gTTAGCTGCTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑c > 2:4050466/1‑93 (MQ=255)
ttAGCTGCTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑cc > 1:5415273/1‑93 (MQ=255)
ttAGCTGCTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGGTGATATCGCTTGAACATCCAGCGAAACAGG‑cc > 1:270247/1‑93 (MQ=255)
ttAGCTGCTGTTCCGCAACTTGGGGCGATGAAAGGGTTAGATTATCCTCGACGTTTCCCGTTCATATCGCTTGAACATCCAGCGAAACAGG‑cc > 2:9616258/1‑93 (MQ=255)
tAGCTGCTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑ccc < 2:3507175/93‑1 (MQ=255)
gctggtGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑ccccc < 1:513476/93‑1 (MQ=255)
ctgctgTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑cccccc < 1:8545794/93‑1 (MQ=255)
tgctgTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGc‑ccccccc > 2:6806464/1‑93 (MQ=255)
tgctgTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑ccccccc > 1:765641/1‑93 (MQ=255)
gctgTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑ccccccca < 1:10014323/93‑2 (MQ=255)
gTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACCGA‑cccccccatcg > 1:3401286/1‑89 (MQ=255)
gTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑cccccccatcg > 2:8804818/1‑89 (MQ=255)
gTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATc > 1:7959489/1‑93 (MQ=255)
ttCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCg > 2:3917908/1‑93 (MQ=255)
ttCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGa < 2:7778881/93‑1 (MQ=255)
ttCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGa < 2:123805/93‑1 (MQ=255)
tCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGa > 1:9003835/1‑93 (MQ=255)
tCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAg < 1:6205050/93‑1 (MQ=255)
cGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGc < 1:3781372/93‑1 (MQ=255)
tgaCTTGGACCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGATTGAACATCCAGCCGAACA‑G‑CGCCCCCCATAGagaaga > 2:6957314/3‑93 (MQ=255)
cAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGa > 1:3209244/1‑93 (MQ=255)
aaCTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGaa > 1:5042541/1‑93 (MQ=255)
aaCTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGaa > 2:9646547/1‑93 (MQ=255)
cTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGaaaa < 2:4873392/93‑1 (MQ=255)
ttGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGaaaa > 1:3703723/1‑93 (MQ=255)
ttGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAAc < 1:8232764/93‑1 (MQ=255)
ttGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAAc < 2:5758266/93‑1 (MQ=255)
tGGTGCGATGAAATGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTTAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAAc < 2:7478661/93‑1 (MQ=255)
tGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACg < 1:7428473/93‑1 (MQ=255)
gTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACggt < 2:1436828/93‑1 (MQ=255)
cGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACggtggt < 2:2215738/93‑1 (MQ=255)
cGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑‑CCCCCCATCGAGCAGAAAACGgtggtg < 2:9768319/93‑1 (MQ=255)
gATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACggtggt < 1:9142874/93‑1 (MQ=255)
gATAAAGGGTTTAGATTACCCCCGACGTGCCCGGTTGATATCTCTTGAATATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACggtggt < 2:5475977/93‑1 (MQ=255)
tGAAAGGGTTAGATTATCCCCGGCGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGa < 2:1636672/93‑1 (MQ=255)
gAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGa < 2:1668626/93‑1 (MQ=255)
gAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGa < 1:6960241/93‑1 (MQ=255)
gAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGAt > 2:9683266/1‑93 (MQ=255)
gAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGAt > 2:1481100/1‑93 (MQ=255)
aaGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATgg > 2:4625101/1‑93 (MQ=255)
aaGGGTTAGATTATCCCCGACGTTTCCCGTTGATAGCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATgg > 1:1780779/1‑93 (MQ=255)
aGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGc > 2:8582862/1‑93 (MQ=255)
ttAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGaa > 1:8867527/1‑93 (MQ=255)
ttAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAAc > 1:7127602/1‑93 (MQ=255)
tAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAAcc < 2:9187805/93‑1 (MQ=255)
tAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACA‑G‑TCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGTGAAcc > 1:6883579/1‑93 (MQ=255)
gATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGGCCCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAAcc < 1:2532675/93‑1 (MQ=255)
gATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTg > 2:6391671/1‑93 (MQ=255)
aTTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTg < 2:5650317/93‑1 (MQ=255)
tCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTa < 2:6551030/93‑1 (MQ=255)
tCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTa < 1:3475675/93‑1 (MQ=255)
ccccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTAc > 2:6336575/1‑93 (MQ=255)
ccccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTAc < 1:2239430/93‑1 (MQ=255)
ccccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTAc < 2:2043199/93‑1 (MQ=255)
ccccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTAc > 1:9699904/1‑93 (MQ=255)
cccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACg > 2:3534513/1‑93 (MQ=255)
cccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACg < 1:416484/93‑1 (MQ=255)
cccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACg < 2:1521668/93‑1 (MQ=255)
ccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGa > 1:1953440/1‑93 (MQ=255)
ccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGa > 2:3261669/1‑93 (MQ=255)
ccGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGa < 2:8787914/93‑1 (MQ=255)
cGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAg > 1:1503417/1‑93 (MQ=255)
cGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAg < 2:1786950/93‑1 (MQ=255)
gACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAg > 1:7150587/1‑93 (MQ=255)
gACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGt > 2:2834564/1‑93 (MQ=255)
caCGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGt < 1:3305650/92‑1 (MQ=255)
aCGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGCACCTGTTTTACGAGt > 1:2344401/1‑93 (MQ=255)
cGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGc > 1:6435549/1‑93 (MQ=255)
tttCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGt > 1:7002191/1‑93 (MQ=255)
tttCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGt < 2:1933060/93‑1 (MQ=255)
ttCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTa > 2:7382108/1‑93 (MQ=255)
cgcGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAAt < 2:8699972/91‑1 (MQ=255)
cGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCt > 1:8889331/1‑93 (MQ=255)
tGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGt < 1:9355826/93‑1 (MQ=255)
gATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGt < 2:2248845/93‑1 (MQ=255)
gATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTc > 1:4312803/1‑93 (MQ=255)
tCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCAcc > 2:5969968/1‑93 (MQ=255)
tCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCAccc < 1:6031943/93‑1 (MQ=255)
cGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGAGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCg < 1:1052665/93‑1 (MQ=255)
cTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGGAAACGGGGGTGGATGGCGGACCTGTTTTACGAGTGCGGAATCTTGTCACCCggt > 2:1019317/1‑91 (MQ=255)
cTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGtt < 2:4725656/93‑1 (MQ=255)
tGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTc > 1:7918259/1‑93 (MQ=255)
tGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTc > 2:5373170/1‑93 (MQ=255)
aCATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCt < 2:5900306/93‑1 (MQ=255)
cATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCtt < 2:4134504/93‑1 (MQ=255)
cATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCtt > 2:7112161/1‑93 (MQ=255)
cATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCtt > 2:5125651/1‑93 (MQ=255)
cATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCtt < 1:4126425/93‑1 (MQ=255)
tCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCttt < 1:6398069/93‑1 (MQ=255)
tCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTTTGACCCGTTTCCCTTTg > 1:2455566/1‑93 (MQ=255)
tCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTg > 2:4966883/1‑93 (MQ=255)
cAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTcgcg > 2:2737198/1‑93 (MQ=255)
aGCGAAGCA‑G‑CCCCCCGCAGCGAGCAGGAAACGGTGGTGGATGGCTATCCTGTTTTACGAGTGCGTAATCTTGTCGCCCGTTTCAGTTTgcgc < 2:7206853/93‑1 (MQ=255)
cGAAACAGG‑‑CCCCACCATCGAGCAGAAAGCCGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTTTCACCCGTTTCCCTTTGCGCAg < 1:8741748/93‑1 (MQ=255)
aaaCAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCcgcg > 2:2375033/1‑93 (MQ=255)
aaaCAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCg > 2:4416903/1‑93 (MQ=255)
aaCAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCgg < 2:3634688/93‑1 (MQ=255)
aaCAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCgg > 2:9458093/1‑93 (MQ=255)
gg‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGttt < 1:9793028/93‑1 (MQ=255)
|
GTTAGCTGCTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTT > NC_000913/867546‑867728
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAATCGC > NC_000913/867554‑867738
|
CTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATC < SRR4302540.2930371/94‑1 (MQ=60)
TGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATC > SRR4302540.8052257/1‑94 (MQ=60)
TGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATC > SRR4302540.8052259/1‑94 (MQ=60)
TGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCG < SRR4302540.9306746/94‑1 (MQ=60)
TGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAAC‑CG‑ACCCCCCCATCG > SRR4302540.3438364/1‑94 (MQ=60)
TTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGA > SRR4302540.9111855/1‑94 (MQ=60)
TCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGC < SRR4302540.6274115/94‑1 (MQ=60)
CGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCA < SRR4302540.3822613/94‑1 (MQ=60)
CGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAAC‑GG‑GCCCCCCCATCGAGCAG < SRR4302540.610305/94‑1 (MQ=60)
GCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGA > SRR4302540.3244088/1‑94 (MQ=60)
CAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAA > SRR4302540.5097087/1‑94 (MQ=60)
CTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAA > SRR4302540.3744157/1‑94 (MQ=60)
CTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAAC < SRR4302540.5730811/94‑1 (MQ=60)
TTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACG < SRR4302540.8328459/94‑1 (MQ=60)
TGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGG < SRR4302540.7511226/94‑1 (MQ=60)
GGTGCGATGAAAGGTTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGT < SRR4302540.3725455/94‑1 (MQ=60)
GGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGT > SRR4302540.9377268/1‑94 (MQ=60)
GGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGT < SRR4302540.7067999/94‑1 (MQ=60)
GTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTG > SRR4302540.8936804/1‑94 (MQ=60)
GCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGT < SRR4302540.6504541/94‑1 (MQ=60)
GATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTG < SRR4302540.9252707/94‑1 (MQ=60)
GATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGG > SRR4302540.8813451/1‑94 (MQ=60)
ATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGG > SRR4302540.2877463/1‑94 (MQ=60)
TGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGAT > SRR4302540.3348651/1‑94 (MQ=60)
GAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGAT < SRR4302540.7037665/94‑1 (MQ=60)
GAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATG > SRR4302540.966501/1‑94 (MQ=60)
AAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATG > SRR4302540.9204763/1‑94 (MQ=60)
AAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATAGCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGG > SRR4302540.1800116/1‑94 (MQ=60)
GGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGA < SRR4302540.3771706/94‑1 (MQ=60)
GGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGGGGATGGGGAA > SRR4302540.1673085/1‑94 (MQ=60)
GTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAA < SRR4302540.164936/94‑1 (MQ=60)
GTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAA > SRR4302540.8970139/1‑94 (MQ=60)
GTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAAC > SRR4302540.7206988/1‑94 (MQ=60)
TTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACA‑G‑TCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGTGAACC > SRR4302540.6959887/1‑94 (MQ=60)
TAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACC < SRR4302540.7473070/94‑1 (MQ=60)
AGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTG > SRR4302540.239033/1‑94 (MQ=60)
GATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGGCCCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCT < SRR4302540.2559997/94‑1 (MQ=60)
GATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTG > SRR4302540.3472635/1‑94 (MQ=60)
GATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGT > SRR4302540.8047463/1‑94 (MQ=60)
ATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATTGCGAACCTGT > SRR4302540.815257/1‑94 (MQ=60)
ATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTT > SRR4302540.7130521/1‑94 (MQ=60)
ATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTT > SRR4302540.10110915/1‑94 (MQ=60)
ATCCCCGACGTTTCCCGTCGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTA < SRR4302540.2463182/94‑1 (MQ=60)
TCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTAC > SRR4302540.9813946/1‑94 (MQ=60)
TCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTAC < SRR4302540.7732486/94‑1 (MQ=60)
TCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTAC < SRR4302540.3513520/94‑1 (MQ=60)
CCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACG < SRR4302540.1051172/94‑1 (MQ=60)
CCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACG < SRR4302540.2263504/94‑1 (MQ=60)
CCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACG > SRR4302540.5171226/1‑94 (MQ=60)
CCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGA > SRR4302540.1974686/1‑94 (MQ=60)
CCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGA < SRR4302540.420854/94‑1 (MQ=60)
CCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGA < SRR4302540.420853/94‑1 (MQ=60)
CCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAG > SRR4302540.1519997/1‑94 (MQ=60)
CCGACGTTTCCCGGTGATATCGCTTGACCATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAG < SRR4302540.1980773/94‑1 (MQ=60)
CGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAG > SRR4302540.7230272/1‑94 (MQ=60)
CGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGCGGGTGGTGAACCTGTTTTACGAC > SRR4302540.7230271/1‑94 (MQ=60)
CGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGACGGCGAACCTGTTTTACGAGT < SRR4302540.9853874/94‑1 (MQ=60)
GACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGCACCTGTTTTACGAGT > SRR4302540.2369656/1‑94 (MQ=60)
CACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTG < SRR4302540.3341844/94‑1 (MQ=60)
ACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGC > SRR4302540.6507182/1‑94 (MQ=60)
GTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGT > SRR4302540.7079888/1‑94 (MQ=60)
GTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGT > SRR4302540.7079886/1‑94 (MQ=60)
TCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAA < SRR4302540.2147078/94‑1 (MQ=60)
CCCGTTGATATCGCTTGAACATCCAGCGAAACAAG‑‑CCCCCCCATCGAGCAGAAAACGGAGGTGGATGGCGTACCTGCTTTACGAGCGCGCAATC > SRR4302540.9062606/1‑94 (MQ=60)
CCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCT > SRR4302540.8992237/1‑94 (MQ=60)
CGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATTGCGAACCTGTTTTACGAGTGCGCAATCT > SRR4302540.5266623/1‑94 (MQ=60)
CGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCT > SRR4302540.2567121/1‑94 (MQ=60)
GTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTG > SRR4302540.2265687/1‑94 (MQ=60)
GTTGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTG > SRR4302540.703425/1‑94 (MQ=60)
TGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTC < SRR4302540.368900/94‑1 (MQ=60)
TGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTC < SRR4302540.9467256/94‑1 (MQ=60)
TGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTC > SRR4302540.1966549/1‑94 (MQ=60)
TGATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTC > SRR4302540.4359759/1‑94 (MQ=60)
ATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCA > SRR4302540.4316871/1‑94 (MQ=60)
ATATCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCAC > SRR4302540.8994058/1‑94 (MQ=60)
TCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCG < SRR4302540.6098888/94‑1 (MQ=60)
TCGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCG < SRR4302540.7327400/94‑1 (MQ=60)
CGCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGAGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGT < SRR4302540.1063378/94‑1 (MQ=60)
GCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTT > SRR4302540.4776855/1‑94 (MQ=60)
GCTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTT > SRR4302540.7953407/1‑94 (MQ=60)
CTTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTT < SRR4302540.3399462/94‑1 (MQ=60)
TTGAACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTC > SRR4302540.8010561/1‑94 (MQ=60)
TGAACATCCAGCGAAACA‑G‑TCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGACCCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCC < SRR4302540.4600870/94‑1 (MQ=60)
ACATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTT < SRR4302540.5329284/94‑1 (MQ=60)
CATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTT > SRR4302540.1334780/1‑94 (MQ=60)
CATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTT < SRR4302540.4171002/94‑1 (MQ=60)
CATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTT < SRR4302540.4171003/94‑1 (MQ=60)
ATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGGGGGGGATGGCGAACCTGGTTTACGAGTGCGGAATCTTGTCACCCGTTTCCCTGT > SRR4302540.88652/1‑94 (MQ=60)
ATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTTTGACCCGTTTCCCTTTG > SRR4302540.2481993/1‑94 (MQ=60)
ATCCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTG > SRR4302540.2481995/1‑94 (MQ=60)
TCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTG < SRR4302540.6469297/94‑1 (MQ=60)
CCAGCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCG < SRR4302540.4168744/94‑1 (MQ=60)
GCGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAG > SRR4302540.8985243/1‑94 (MQ=60)
CGAAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGG > SRR4302540.6723343/1‑94 (MQ=60)
CGAAACAGG‑‑CCCCACCATCGAGCAGAAAGCCGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTTTCACCCGTTTCCCTTTGCGCAGC < SRR4302540.8843222/94‑1 (MQ=60)
AAACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGG > SRR4302540.3340537/1‑94 (MQ=60)
AACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGT > SRR4302540.6533666/1‑94 (MQ=60)
ACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTT < SRR4302540.1003985/94‑1 (MQ=60)
ACAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTT < SRR4302540.7863211/94‑1 (MQ=60)
CAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTT < SRR4302540.411427/94‑1 (MQ=60)
CAGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTT < SRR4302540.3132855/94‑1 (MQ=60)
AGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTG < SRR4302540.2001327/94‑1 (MQ=60)
AGG‑‑CCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAAGCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTG < SRR4302540.4089990/94‑1 (MQ=60)
GG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTG < SRR4302540.9907739/94‑1 (MQ=60)
G‑GCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGT > SRR4302540.7230433/1‑94 (MQ=60)
GCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTT < SRR4302540.126866/94‑1 (MQ=60)
CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTT > SRR4302540.1143614/1‑94 (MQ=60)
CCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAA > SRR4302540.711327/1‑94 (MQ=60)
CCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAA > SRR4302540.38243/1‑94 (MQ=60)
CCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAA > SRR4302540.9442293/1‑94 (MQ=60)
CCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAA < SRR4302540.6812068/94‑1 (MQ=60)
CCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAA > SRR4302540.6915095/1‑94 (MQ=60)
CCCCATCGAGCAGAAAACGGTGGTGGATGGGGAACCCGTTTTACGCGTGCGTAAACTTGTCACCCGTTTCCCGTTGCGCAGCGGAATGTTGAAT > SRR4302540.103808/1‑94 (MQ=60)
CCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAAT > SRR4302540.1168586/1‑94 (MQ=60)
CCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAAT < SRR4302540.1321850/94‑1 (MQ=60)
CCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGGTGAAT > SRR4302540.8709293/1‑94 (MQ=60)
CCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTCTGCGCAGCGGTTTGGTGAAT > SRR4302540.103807/1‑94 (MQ=60)
CCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAATC > SRR4302540.7321688/1‑94 (MQ=60)
CCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAATC < SRR4302540.9609982/94‑1 (MQ=60)
CCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAATC < SRR4302540.2853227/94‑1 (MQ=60)
CCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAATCG > SRR4302540.5283481/1‑94 (MQ=60)
CATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAATCGC > SRR4302540.713623/1‑94 (MQ=60)
CATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAATCGC < SRR4302540.3289788/94‑1 (MQ=60)
|
CTGTTCCGCAACTTGGTGCGATGAAAGGGTTAGATTATCCCCGACGTTTCCCGTTGATATCGCTTGAACATCCAGCGAAACAGG‑CCCCCCCCATCGAGCAGAAAACGGTGGTGGATGGCGAACCTGTTTTACGAGTGCGTAATCTTGTCACCCGTTTCCCTTTGCGCAGCGGTTTGTTGAATCGC > NC_000913/867554‑867738
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
