Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	985,663	A→G	G181G (GGT→GGC)	ompF ←	outer membrane protein 1a

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	985,663	0	A	G	100.0%	1032.7 / NA	322	G181G (GGT→GGC)	ompF	outer membrane protein 1a
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (149/173); total (149/173)

Only 100 of 331 total aligned reads displayed.

ACCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAAC  >  NC_000913/985573‑985752

aCCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGcc                                                                                         >  1:1932804/1‑93 (MQ=255)

 ccAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGACCCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGccc                                                                                        <  2:5480854/93‑1 (MQ=255)

 ccAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGccc                                                                                        >  2:6424575/1‑93 (MQ=255)

 ccAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGccc                                                                                        >  1:3590158/1‑93 (MQ=255)

 ccAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGccc                                                                                        <  2:8611418/93‑1 (MQ=255)

  caacaaTAACAAGTCCTTCGTATTCGAAGCTGATGGAACCACAATCAACGTCACCGTTAGAAAGGCGTGCAGAGTCACGCTCGTTTTTGCCCa                                                                                       <  1:8934015/93‑1 (MQ=255)

   aaCGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAg                                                                                      <  1:8149840/93‑1 (MQ=255)

   aaCGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAg                                                                                      <  1:7281660/93‑1 (MQ=255)

    aCGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAgg                                                                                     >  1:9392358/1‑93 (MQ=255)

    aCGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAgg                                                                                     <  2:244341/93‑1 (MQ=255)

     cGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGt                                                                                    <  1:9970728/93‑1 (MQ=255)

      gATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTa                                                                                   <  2:1308664/93‑1 (MQ=255)

      gATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTa                                                                                   >  2:7437612/1‑93 (MQ=255)

       aTACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAc                                                                                  >  1:2667057/1‑93 (MQ=255)

       aTACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAc                                                                                  >  1:1694040/1‑93 (MQ=255)

          ccAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGa                                                                               <  1:4410688/93‑1 (MQ=255)

           cAAATCATTCGTATTCGTAGCTGATAGAACCGCCAACCCCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGaa                                                                              <  1:8661875/93‑1 (MQ=255)

           cAAAGCCTTCGTATTCGTAGCTGATAGATCCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGaa                                                                              <  2:7050317/93‑1 (MQ=255)

           cAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGaa                                                                              <  1:5346801/93‑1 (MQ=255)

            aaaGCATTCGTATTCGTAGCTGATAGAGCCGCCAACTCCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAAc                                                                             <  2:5164532/93‑1 (MQ=255)

             aaGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACa                                                                            <  1:6528263/93‑1 (MQ=255)

             aaGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACa                                                                            >  1:5664634/1‑93 (MQ=255)

             aaGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACa                                                                            >  1:7090668/1‑93 (MQ=255)

             aaGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACa                                                                            >  2:3287808/1‑93 (MQ=255)

             aaGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACa                                                                            >  2:9732675/1‑93 (MQ=255)

              aGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAg                                                                           <  2:2816543/93‑1 (MQ=255)

              aGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAg                                                                           <  1:7834942/93‑1 (MQ=255)

                  ttcgtattcgtaGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGaa                                                                       >  2:5345799/1‑93 (MQ=255)

                  ttcgtattcgtaGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGAGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGaa                                                                       >  1:6157492/1‑93 (MQ=255)

                   tcgtattcgtaGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAg                                                                      <  1:8520719/93‑1 (MQ=255)

                   tcgtattcgtaGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAg                                                                      <  2:4194088/93‑1 (MQ=255)

                     gtattcgtaGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGtt                                                                    <  1:4252057/93‑1 (MQ=255)

                     gtattcgtaGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGtt                                                                    <  2:7185346/93‑1 (MQ=255)

                       attcgtaGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCa                                                                  >  2:692740/1‑93 (MQ=255)

                        ttcgtaGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGATTTTGCCCAGGTACTGAACAGCGAAGTTCAg                                                                 >  1:8774429/1‑93 (MQ=255)

                             aGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCAt                                                            <  2:1083814/93‑1 (MQ=255)

                                tGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCaa                                                         >  1:8972265/1‑93 (MQ=255)

                                tGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCaa                                                         >  1:229182/1‑93 (MQ=255)

                                 gATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAAc                                                        >  2:4954826/1‑93 (MQ=255)

                                  aTAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAAcc                                                       >  2:4875480/1‑93 (MQ=255)

                                   tAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCa                                                      <  2:6821278/93‑1 (MQ=255)

                                   tAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCa                                                      <  1:4612651/93‑1 (MQ=255)

                                    aGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAg                                                     <  2:5753568/93‑1 (MQ=255)

                                    aGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAg                                                     >  2:7793712/1‑93 (MQ=255)

                                         cGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCaa                                                >  2:1731057/1‑93 (MQ=255)

                                         cGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCaa                                                <  2:3879508/93‑1 (MQ=255)

                                           ccAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAaag                                              >  2:5668966/1‑93 (MQ=255)

                                           ccAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGACATCAATCAGACCAaag                                              >  1:241520/1‑93 (MQ=255)

                                           ccAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTAAACAGCGAAGTTCAGGCCATCAACCAGACCAaag                                              >  1:9527959/1‑93 (MQ=255)

                                            cAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAaaga                                             <  1:669876/93‑1 (MQ=255)

                                             cacacCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAaagaa                                            <  1:7476280/92‑1 (MQ=255)

                                             aaCACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAaagaa                                            >  1:10004600/1‑93 (MQ=255)

                                              acacCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTGTGTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAaagaag                                           <  2:4720513/93‑1 (MQ=255)

                                                 ccGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTg                                        >  2:5861784/1‑93 (MQ=255)

                                                 ccGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTg                                        >  2:8868203/1‑93 (MQ=255)

                                                    tCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGGTGGAg                                     >  2:4082755/1‑93 (MQ=255)

                                                     cGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGt                                    >  1:7695184/1‑93 (MQ=255)

                                                      gCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGtt                                   <  1:1470420/93‑1 (MQ=255)

                                                        cGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTAc                                 >  2:7574217/1‑93 (MQ=255)

                                                         gTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACg                                >  1:9683224/1‑93 (MQ=255)

                                                         cttAGAACGGCGTGCAGTATCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACg                                <  1:8275947/92‑1 (MQ=255)

                                                          ttAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGa                               >  2:156518/1‑93 (MQ=255)

                                                          ttAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGa                               <  2:2177157/93‑1 (MQ=255)

                                                          ttAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTAGAGTTACGa                               >  1:4432261/1‑93 (MQ=255)

                                                            aGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATa                             <  2:9181724/93‑1 (MQ=255)

                                                            aGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATa                             >  1:1092582/1‑93 (MQ=255)

                                                            aGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATa                             <  2:331826/93‑1 (MQ=255)

                                                                cGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTa                         <  1:5809623/93‑1 (MQ=255)

                                                                 ggCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAg                        <  2:82341/93‑1 (MQ=255)

                                                                 ggCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAg                        >  2:582862/1‑93 (MQ=255)

                                                                  gCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGc                       <  2:3572824/93‑1 (MQ=255)

                                                                  gCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGc                       <  2:6614283/93‑1 (MQ=255)

                                                                    gTGCGGTGTCACGCTCGTTTTTGGCCAGCTGCTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCaa                     <  1:4037368/93‑1 (MQ=25)

                                                                    gTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCaa                     <  1:467499/93‑1 (MQ=255)

                                                                    gTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCaa                     <  1:4753591/93‑1 (MQ=255)

                                                                    gTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCaa                     <  2:9015439/93‑1 (MQ=255)

                                                                     tGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAc                    >  2:9613816/1‑93 (MQ=255)

                                                                     tGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGATGGAGTTACGATAGGTAGCAAc                    >  1:2810973/1‑93 (MQ=255)

                                                                     ggCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAc                    <  2:8043332/92‑1 (MQ=255)

                                                                          tgtCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAcgccgc               >  2:2900829/1‑93 (MQ=255)

                                                                          tgtCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAcgccgc               <  1:8402228/93‑1 (MQ=255)

                                                                          tgtCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAcgccgc               >  1:8471383/1‑93 (MQ=255)

                                                                             cACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCaa            <  1:6849657/93‑1 (MQ=255)

                                                                              ccGCTCCGTTTTGCCCACGTACTGAACACCGAAGTTCAGCCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAac           <  1:3248211/92‑1 (MQ=21)

                                                                              aCGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAac           >  1:3352719/1‑93 (MQ=255)

                                                                              aCGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAac           <  1:9855080/93‑1 (MQ=255)

                                                                               cGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATGGGTAGCAACGCCGCCAaca          <  2:3101488/93‑1 (MQ=255)

                                                                               cGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAaca          <  2:443415/93‑1 (MQ=255)

                                                                               cGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAaca          <  1:5122641/93‑1 (MQ=255)

                                                                               cGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAaca          >  1:7778902/1‑93 (MQ=255)

                                                                               cGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAaca          <  1:3936157/93‑1 (MQ=255)

                                                                                gCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAacac         <  2:3455491/93‑1 (MQ=255)

                                                                                gCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAacac         <  1:6267827/93‑1 (MQ=255)

                                                                                 cTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACg        >  1:4165791/1‑93 (MQ=255)

                                                                                 cTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACg        >  1:8045863/1‑93 (MQ=255)

                                                                                 cTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACg        >  1:9567991/1‑93 (MQ=255)

                                                                                  tCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCATCCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGa       <  1:3192055/93‑1 (MQ=255)

                                                                                  tCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGa       >  2:8317752/1‑93 (MQ=255)

                                                                                   cGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGAc      <  2:6335666/93‑1 (MQ=255)

                                                                                     tttttGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCa    >  1:1262854/1‑93 (MQ=255)

ACCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAAC  >  NC_000913/985573‑985752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAACGAAG  >  NC_000913/985572‑985756

CACCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCC                                                                                             >  SRR4302540.1953867/1‑94 (MQ=60)

CACCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCC                                                                                             <  SRR4302540.1932191/94‑1 (MQ=60)

CACCAACGATACCAAAGCCTTCATATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCC                                                                                             <  SRR4302540.5571566/94‑1 (MQ=60)

 ACCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCC                                                                                            >  SRR4302540.3629375/1‑94 (MQ=60)

  CCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCA                                                                                           <  SRR4302540.420016/94‑1 (MQ=60)

    AACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGG                                                                                         <  SRR4302540.7362914/94‑1 (MQ=60)

    AACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGG                                                                                         >  SRR4302540.9504126/1‑94 (MQ=60)

    AACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGG                                                                                         <  SRR4302540.8244452/94‑1 (MQ=60)

    AACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGG                                                                                         <  SRR4302540.9074588/94‑1 (MQ=60)

     ACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGT                                                                                        >  SRR4302540.203574/1‑94 (MQ=60)

     ACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACAGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGT                                                                                        >  SRR4302540.5781644/1‑94 (MQ=60)

      CGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTA                                                                                       <  SRR4302540.10087039/94‑1 (MQ=60)

      CGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTA                                                                                       >  SRR4302540.7436707/1‑94 (MQ=60)

      CGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTA                                                                                       >  SRR4302540.6182161/1‑94 (MQ=60)

      CGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTA                                                                                       <  SRR4302540.4268800/94‑1 (MQ=60)

      CGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTA                                                                                       <  SRR4302540.1215931/94‑1 (MQ=60)

       GATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAC                                                                                      >  SRR4302540.1712407/1‑94 (MQ=60)

       GATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAC                                                                                      <  SRR4302540.9658800/94‑1 (MQ=60)

       GATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAC                                                                                      >  SRR4302540.4771832/1‑94 (MQ=60)

       GATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAC                                                                                      >  SRR4302540.9089315/1‑94 (MQ=60)

       GATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAC                                                                                      <  SRR4302540.9599159/94‑1 (MQ=60)

       GATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAC                                                                                      >  SRR4302540.2695962/1‑94 (MQ=60)

       GATACCAAAGCCTTCGGATTCGTAGCTGATAGACCCGCCAACCCCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTAC                                                                                      <  SRR4302540.6855676/94‑1 (MQ=60)

        ATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACG                                                                                     >  SRR4302540.7811524/1‑94 (MQ=60)

           CCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAA                                                                                  <  SRR4302540.7593011/94‑1 (MQ=60)

           CCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAA                                                                                  <  SRR4302540.4458497/94‑1 (MQ=60)

           CCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAA                                                                                  >  SRR4302540.7783932/1‑94 (MQ=60)

           CCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAA                                                                                  >  SRR4302540.7074681/1‑94 (MQ=60)

            CAAATCATTCGTATTCGTAGCTGATAGAACCGCCAACCCCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAAC                                                                                 <  SRR4302540.8762479/94‑1 (MQ=60)

            CAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAAC                                                                                 >  SRR4302540.8992111/1‑94 (MQ=60)

            CAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAAC                                                                                 >  SRR4302540.3477575/1‑94 (MQ=60)

            CAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAAC                                                                                 <  SRR4302540.5405466/94‑1 (MQ=60)

             AAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACA                                                                                >  SRR4302540.9961561/1‑94 (MQ=60)

             AAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACA                                                                                >  SRR4302540.1917913/1‑94 (MQ=60)

             AAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACA                                                                                <  SRR4302540.4467675/94‑1 (MQ=60)

             AAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACA                                                                                >  SRR4302540.5727016/1‑94 (MQ=60)

             AAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACA                                                                                >  SRR4302540.804774/1‑94 (MQ=60)

             AAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACA                                                                                >  SRR4302540.7169574/1‑94 (MQ=60)

              AAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAG                                                                               <  SRR4302540.6600757/94‑1 (MQ=60)

              AAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAG                                                                               >  SRR4302540.335710/1‑94 (MQ=60)

              AAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAG                                                                               <  SRR4302540.9545976/94‑1 (MQ=60)

               AGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGC                                                                              <  SRR4302540.7926488/94‑1 (MQ=60)

               AGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGC                                                                              >  SRR4302540.1872824/1‑94 (MQ=60)

                GCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCG                                                                             <  SRR4302540.6150314/94‑1 (MQ=60)

                  CTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAA                                                                           <  SRR4302540.8064419/94‑1 (MQ=60)

                  CTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAA                                                                           >  SRR4302540.4685317/1‑94 (MQ=60)

                  CTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAA                                                                           <  SRR4302540.6820449/94‑1 (MQ=60)

                  CTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAA                                                                           >  SRR4302540.6748547/1‑94 (MQ=60)

                  CTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGAGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAA                                                                           >  SRR4302540.6226095/1‑94 (MQ=60)

                    TCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGT                                                                         <  SRR4302540.448607/94‑1 (MQ=60)

                    TCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGT                                                                         <  SRR4302540.8619740/94‑1 (MQ=60)

                     CGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTT                                                                        >  SRR4302540.1378837/1‑94 (MQ=60)

                      GTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTC                                                                       <  SRR4302540.9702478/94‑1 (MQ=60)

                      GTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTC                                                                       <  SRR4302540.7910435/94‑1 (MQ=60)

                      GTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTC                                                                       <  SRR4302540.7910434/94‑1 (MQ=60)

                      GTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTC                                                                       <  SRR4302540.4298317/94‑1 (MQ=60)

                       TATTCGTAGCTGATAGAACCGCCAACCCCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCA                                                                      <  SRR4302540.8582263/94‑1 (MQ=60)

                       TATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCA                                                                      <  SRR4302540.8441087/94‑1 (MQ=60)

                        ATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCTGGCAGTGCCACGCTCGCTTTTTCCCAGGACCTGAACAACGAAATTCAG                                                                     >  SRR4302540.5274015/1‑94 (MQ=53)

                        ATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAG                                                                     <  SRR4302540.3193686/94‑1 (MQ=60)

                        ATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAG                                                                     <  SRR4302540.6448878/94‑1 (MQ=60)

                        ATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAG                                                                     <  SRR4302540.4031619/94‑1 (MQ=60)

                        ATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGATTTTGCCCAGGTACTGAACAGCGAAGTTCAG                                                                     >  SRR4302540.8876076/1‑94 (MQ=60)

                        ATGCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAG                                                                     <  SRR4302540.3980969/94‑1 (MQ=60)

                         TTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGG                                                                    <  SRR4302540.3487075/94‑1 (MQ=60)

                         TTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGG                                                                    >  SRR4302540.2448106/1‑94 (MQ=60)

                         TTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGG                                                                    >  SRR4302540.5306880/1‑94 (MQ=60)

                          TCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGC                                                                   >  SRR4302540.1519677/1‑94 (MQ=60)

                           CGTAGCTGATAGACCCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCC                                                                  <  SRR4302540.4261040/94‑1 (MQ=60)

                           CGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCC                                                                  <  SRR4302540.7301560/94‑1 (MQ=60)

                            GTAGCTGATAGAACCGCTAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCA                                                                 <  SRR4302540.5601632/94‑1 (MQ=60)

                            GTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCA                                                                 >  SRR4302540.8945240/1‑94 (MQ=60)

                            CTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCA                                                                 <  SRR4302540.3262802/94‑1 (MQ=60)

                             TAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCAT                                                                <  SRR4302540.5110548/94‑1 (MQ=60)

                              AGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATC                                                               >  SRR4302540.9663127/1‑94 (MQ=60)

                               GCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGGCCAGGTACTGAACAGCGAAGTTCAGGCCATCA                                                              <  SRR4302540.7666758/94‑1 (MQ=60)

                                CTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAA                                                             >  SRR4302540.231400/1‑94 (MQ=60)

                                CTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAA                                                             >  SRR4302540.8660665/1‑94 (MQ=60)

                                CTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAA                                                             >  SRR4302540.9078845/1‑94 (MQ=60)

                                CTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAA                                                             >  SRR4302540.4700082/1‑94 (MQ=60)

                                CTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAA                                                             >  SRR4302540.8206472/1‑94 (MQ=60)

                                  GATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACC                                                           >  SRR4302540.6550873/1‑94 (MQ=60)

                                   ATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCA                                                          <  SRR4302540.5841068/94‑1 (MQ=60)

                                    TAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAG                                                         <  SRR4302540.4479597/94‑1 (MQ=60)

                                    TAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAG                                                         <  SRR4302540.9698975/94‑1 (MQ=60)

                                    TAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAG                                                         <  SRR4302540.855817/94‑1 (MQ=60)

                                    TAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAG                                                         <  SRR4302540.8274936/94‑1 (MQ=60)

                                    TAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAG                                                         <  SRR4302540.4662148/94‑1 (MQ=60)

                                    TAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAG                                                         <  SRR4302540.8274937/94‑1 (MQ=60)

                                     AGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGA                                                        >  SRR4302540.6324257/1‑94 (MQ=60)

                                     AGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGA                                                        >  SRR4302540.9941969/1‑94 (MQ=60)

                                      GAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGAC                                                       <  SRR4302540.4568154/94‑1 (MQ=60)

                                           GCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAG                                                  <  SRR4302540.855879/94‑1 (MQ=60)

                                           GCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGACATCAATCAGACCAAAG                                                  >  SRR4302540.243853/1‑94 (MQ=60)

                                           GCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTAAACAGCGAAGTTCAGGCCATCAACCAGACCAAAG                                                  >  SRR4302540.9640767/1‑94 (MQ=60)

                                             CAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAA                                                >  SRR4302540.10121129/1‑94 (MQ=60)

                                             CAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAA                                                <  SRR4302540.677056/94‑1 (MQ=60)

                                              CACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAG                                               <  SRR4302540.7559715/94‑1 (MQ=60)

                                              AACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAG                                               <  SRR4302540.2337655/94‑1 (MQ=60)

                                                CACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTT                                             <  SRR4302540.4728465/94‑1 (MQ=60)

                                                CACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTT                                             <  SRR4302540.88032/94‑1 (MQ=60)

                                                CACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTT                                             <  SRR4302540.2851297/94‑1 (MQ=60)

                                                  CCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGG                                           >  SRR4302540.4419622/1‑94 (MQ=60)

                                                  CCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTATTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGG                                           <  SRR4302540.2811605/94‑1 (MQ=60)

                                                    GTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAG                                         >  SRR4302540.418269/1‑94 (MQ=60)

                                                     TCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGT                                        >  SRR4302540.7782844/1‑94 (MQ=60)

                                                     TCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGT                                        >  SRR4302540.7782845/1‑94 (MQ=60)

                                                      CGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTT                                       >  SRR4302540.9637527/1‑94 (MQ=60)

                                                       GCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTA                                      <  SRR4302540.275426/94‑1 (MQ=60)

                                                       GCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTA                                      <  SRR4302540.1486489/94‑1 (MQ=60)

                                                        CCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTAC                                     <  SRR4302540.3887184/94‑1 (MQ=60)

                                                         CGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACG                                    >  SRR4302540.7170450/1‑94 (MQ=60)

                                                         CGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACG                                    >  SRR4302540.9797150/1‑94 (MQ=60)

                                                          GTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGA                                   >  SRR4302540.4509016/1‑94 (MQ=60)

                                                          GTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTAGAGTTACGA                                   >  SRR4302540.4480277/1‑94 (MQ=60)

                                                          GTTAGAACGGCGTGCAGTATCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGA                                   <  SRR4302540.8372086/94‑1 (MQ=60)

                                                          CTTAGAACGGCGTGCAGTATCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGA                                   <  SRR4302540.8372085/94‑1 (MQ=60)

                                                           TTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGAT                                  <  SRR4302540.82052/94‑1 (MQ=60)

                                                           TTAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGAT                                  <  SRR4302540.8193457/94‑1 (MQ=60)

                                                            TAGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATA                                 >  SRR4302540.1103799/1‑94 (MQ=60)

                                                             AGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAG                                <  SRR4302540.902976/94‑1 (MQ=60)

                                                             AGAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAG                                <  SRR4302540.5833567/94‑1 (MQ=60)

                                                              GAACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGG                               <  SRR4302540.2414692/94‑1 (MQ=60)

                                                               AACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGT                              <  SRR4302540.4223301/94‑1 (MQ=60)

                                                                ACGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTA                             >  SRR4302540.4445803/1‑94 (MQ=60)

                                                                 CGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAG                            <  SRR4302540.5163474/94‑1 (MQ=60)

                                                                 CGGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAG                            <  SRR4302540.5873831/94‑1 (MQ=60)

                                                                  GGCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGC                           >  SRR4302540.2413521/1‑94 (MQ=60)

                                                                   GCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCA                          <  SRR4302540.8910469/94‑1 (MQ=60)

                                                                   GCGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCA                          <  SRR4302540.5402977/94‑1 (MQ=60)

                                                                    CGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAA                         <  SRR4302540.1564422/94‑1 (MQ=60)

                                                                    CGTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAA                         <  SRR4302540.6722708/94‑1 (MQ=60)

                                                                     GTGCGGTGTCACGCTCGTTTTTGGCCAGCTGCTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAC                        <  SRR4302540.4080897/94‑1 (MQ=60)

                                                                     GTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAC                        <  SRR4302540.4804314/94‑1 (MQ=60)

                                                                     GTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAC                        <  SRR4302540.472500/94‑1 (MQ=60)

                                                                     GTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAC                        >  SRR4302540.8790703/1‑94 (MQ=60)

                                                                     GTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAAC                        <  SRR4302540.8589996/94‑1 (MQ=60)

                                                                     GTGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGATGGAGTTACGATAGGTAGCAAC                        >  SRR4302540.2841329/1‑94 (MQ=60)

                                                                      TGCAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACG                       >  SRR4302540.7149573/1‑94 (MQ=60)

                                                                        CAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCC                     <  SRR4302540.1090781/94‑1 (MQ=60)

                                                                        CAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCC                     <  SRR4302540.1090780/94‑1 (MQ=60)

                                                                        CAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCC                     >  SRR4302540.3698319/1‑94 (MQ=60)

                                                                        CAGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCC                     >  SRR4302540.3274685/1‑94 (MQ=60)

                                                                         AGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCG                    <  SRR4302540.9840065/94‑1 (MQ=60)

                                                                         AGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCG                    >  SRR4302540.1489513/1‑94 (MQ=60)

                                                                         AGTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCG                    <  SRR4302540.8516022/94‑1 (MQ=60)

                                                                          GTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGC                   >  SRR4302540.1417788/1‑94 (MQ=60)

                                                                          GTGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGC                   >  SRR4302540.8569767/1‑94 (MQ=60)

                                                                           TGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCC                  <  SRR4302540.8499742/94‑1 (MQ=60)

                                                                           TGTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCC                  <  SRR4302540.7448455/94‑1 (MQ=60)

                                                                            GTCACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCA                 <  SRR4302540.1132236/94‑1 (MQ=60)

                                                                              CACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAAC               <  SRR4302540.7219162/94‑1 (MQ=60)

                                                                              CACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAAC               >  SRR4302540.3389468/1‑94 (MQ=60)

                                                                              CACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAAC               <  SRR4302540.9433539/94‑1 (MQ=60)

                                                                              CACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAAC               <  SRR4302540.6925540/94‑1 (MQ=60)

                                                                               ACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACA              <  SRR4302540.2542507/94‑1 (MQ=60)

                                                                               ACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACA              <  SRR4302540.9970254/94‑1 (MQ=60)

                                                                               ACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACA              <  SRR4302540.3283588/94‑1 (MQ=60)

                                                                               ACGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACA              >  SRR4302540.7869834/1‑94 (MQ=60)

                                                                                CGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACAC             <  SRR4302540.9993245/94‑1 (MQ=60)

                                                                                CGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACAC             <  SRR4302540.9993246/94‑1 (MQ=60)

                                                                                CGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACAC             <  SRR4302540.3978698/94‑1 (MQ=60)

                                                                                CGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACAC             >  SRR4302540.10102743/1‑94 (MQ=60)

                                                                                CGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACAC             <  SRR4302540.5086067/94‑1 (MQ=60)

                                                                                CGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACAC             <  SRR4302540.5178107/94‑1 (MQ=60)

                                                                                CGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACAC             >  SRR4302540.6666274/1‑94 (MQ=60)

                                                                                CGCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACAAAAGCAGTTGGAGTTACGATAGGTAGCAACGCCGCTAACAC             >  SRR4302540.8686711/1‑94 (MQ=60)

                                                                                 GCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACG            <  SRR4302540.6337555/94‑1 (MQ=60)

                                                                                 GCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACG            >  SRR4302540.8139338/1‑94 (MQ=60)

                                                                                 GCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACG            >  SRR4302540.4210952/1‑94 (MQ=60)

                                                                                 GCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACG            >  SRR4302540.9681054/1‑94 (MQ=60)

                                                                                 GCTCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACG            >  SRR4302540.1983895/1‑94 (MQ=60)

                                                                                   TCGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCATCCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGAC          <  SRR4302540.3226726/94‑1 (MQ=60)

                                                                                    CGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACC         >  SRR4302540.5489915/1‑94 (MQ=60)

                                                                                    CGTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACC         >  SRR4302540.3391014/1‑94 (MQ=60)

                                                                                     GTTTTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCA        >  SRR4302540.1275819/1‑94 (MQ=60)

                                                                                        TTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAACG     <  SRR4302540.6279206/94‑1 (MQ=60)

                                                                                        TTTGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAACG     <  SRR4302540.2916072/94‑1 (MQ=60)

                                                                                          TGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAACGAA   >  SRR4302540.2187967/1‑94 (MQ=60)

                                                                                          TGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAACGAA   <  SRR4302540.1347747/94‑1 (MQ=60)

                                                                                          TGCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAACGAA   >  SRR4302540.8623472/1‑94 (MQ=60)

                                                                                           GCCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAACGAAG  >  SRR4302540.1070208/1‑94 (MQ=60)

CACCAACGATACCAAAGCCTTCGTATTCGTAGCTGATAGAACCGCCAACACCGTCGCCGTTAGAACGGCGTGCAGTGTCACGCTCGTTTTTACCCAGGTACTGAACAGCGAAGTTCAGGCCATCAACCAGACCAAAGAAGTTGGAGTTACGATAGGTAGCAACGCCGCCAACACGACCAACGAAG  >  NC_000913/985572‑985756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`