Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,053,401	T→C	A657A (GCA→GCG)	torS ←	TorS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,053,401	0	T	C	100.0%	706.7 / NA	220	A657A (GCA→GCG)	torS	TorS
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (98/122); total (98/122)

Only 100 of 231 total aligned reads displayed.

GGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTG  >  NC_000913/1053311‑1053490

ggTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGgcgc                                                                                         <  2:6708430/93‑1 (MQ=255)

  tAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCg                                                                                       <  1:6359015/93‑1 (MQ=255)

  tAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCg                                                                                       >  1:5123322/1‑93 (MQ=255)

  tAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCg                                                                                       >  2:7227015/1‑93 (MQ=255)

    aTTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTg                                                                                     >  2:2153693/1‑93 (MQ=255)

    aTTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTg                                                                                     >  2:4594952/1‑93 (MQ=255)

     ttCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTgg                                                                                    >  1:8670830/1‑93 (MQ=255)

        gCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCaa                                                                                 <  2:34833/93‑1 (MQ=255)

        gCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCaa                                                                                 <  1:8040128/93‑1 (MQ=255)

          tGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAaca                                                                               >  2:1321297/1‑93 (MQ=255)

          tGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAaca                                                                               <  2:328737/93‑1 (MQ=255)

           gggTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAacac                                                                              <  1:1126372/93‑1 (MQ=255)

           gggTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAacac                                                                              <  1:3522322/93‑1 (MQ=255)

            ggTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACg                                                                             <  2:7781240/93‑1 (MQ=255)

            ggTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGAAGCACCGCCTGATTGAATGTTTTTGGCACGGGTGCCGTGGCAACACg                                                                             >  1:3627267/1‑93 (MQ=255)

              ttAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTa                                                                           <  1:3122389/93‑1 (MQ=255)

               tAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTaa                                                                          <  2:6175872/93‑1 (MQ=255)

               tAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTaa                                                                          <  1:5967080/93‑1 (MQ=255)

               tAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTaa                                                                          <  1:4938780/93‑1 (MQ=255)

                agggggTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAAc                                                                         <  2:3263190/90‑1 (MQ=255)

                aGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAAc                                                                         <  1:6575612/93‑1 (MQ=255)

                   gggTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGc                                                                      <  1:7234997/93‑1 (MQ=255)

                   gggTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGc                                                                      >  1:7123040/1‑93 (MQ=255)

                      ttATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAg                                                                   >  1:1751644/1‑93 (MQ=255)

                      ttATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAg                                                                   <  2:4718333/93‑1 (MQ=255)

                      ttATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCCTGGCATCACGTAACGGCAAg                                                                   >  1:2682052/1‑93 (MQ=255)

                       tATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGc                                                                  <  2:6416966/93‑1 (MQ=255)

                       tATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGc                                                                  <  2:3002856/93‑1 (MQ=255)

                        aTCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCg                                                                 >  2:573690/1‑93 (MQ=255)

                         tCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGt                                                                >  2:5066894/1‑93 (MQ=255)

                         tCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGt                                                                >  2:6538163/1‑93 (MQ=255)

                          cTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTa                                                               >  2:6333396/1‑93 (MQ=255)

                           ttCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTaa                                                              >  2:9604571/1‑93 (MQ=255)

                           ttCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTaa                                                              <  1:464658/93‑1 (MQ=255)

                           ttCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTaa                                                              >  1:7303905/1‑93 (MQ=255)

                            tCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTaaa                                                             >  1:5217813/1‑93 (MQ=255)

                             cAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAAc                                                            <  1:7583873/93‑1 (MQ=255)

                              aaTTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACa                                                           >  1:4595340/1‑93 (MQ=255)

                               aTTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaa                                                          >  1:6660227/1‑93 (MQ=255)

                                ttAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaa                                                         >  1:2404377/1‑93 (MQ=255)

                                 tAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaa                                                        <  2:2566358/93‑1 (MQ=255)

                                 tAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaa                                                        <  1:5219484/93‑1 (MQ=255)

                                  aaCAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaaa                                                       <  1:7884406/93‑1 (MQ=255)

                                   aCAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAAc                                                      <  1:4051097/93‑1 (MQ=255)

                                    cAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACa                                                     <  1:1114553/93‑1 (MQ=255)

                                    cAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACa                                                     >  1:6968568/1‑93 (MQ=255)

                                    cAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACa                                                     <  2:9505735/93‑1 (MQ=255)

                                    cAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACa                                                     >  1:4885360/1‑93 (MQ=255)

                                    cAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACa                                                     <  2:7598136/93‑1 (MQ=255)

                                     aGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAg                                                    >  2:2223242/1‑93 (MQ=255)

                                      gCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGc                                                   <  1:8675398/93‑1 (MQ=255)

                                        aaaCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCtt                                                 >  1:275047/1‑93 (MQ=255)

                                         aaCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTc                                                <  1:1335239/93‑1 (MQ=255)

                                         aaCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTc                                                >  2:8604305/1‑93 (MQ=255)

                                          aCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTcc                                               <  2:3661066/93‑1 (MQ=255)

                                          aCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTcc                                               <  2:9978972/93‑1 (MQ=255)

                                           cGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAGCACGTAACGGCAAGCGTAAACAAAAACAGCTTCCa                                              <  2:9768195/93‑1 (MQ=255)

                                           cGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCa                                              >  1:9542746/1‑93 (MQ=255)

                                           cGTAAACCATCTAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACACAAACAGCTTCCa                                              <  2:8963638/93‑1 (MQ=255)

                                            gTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCaa                                             >  1:9300767/1‑93 (MQ=255)

                                            gTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCaa                                             <  1:9151400/93‑1 (MQ=255)

                                             tAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCCAc                                            >  1:4400081/1‑93 (MQ=255)

                                             tAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCCCCGTGGTAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAAc                                            <  1:2746032/93‑1 (MQ=255)

                                               aaCCGTCAAGACGCACCGCCTGATTGCCTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCt                                          >  2:9067965/1‑93 (MQ=255)

                                                aCCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTc                                         <  1:1258511/93‑1 (MQ=255)

                                                 ccGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTcc                                        <  1:560340/93‑1 (MQ=255)

                                                  cGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCg                                       <  2:2629740/93‑1 (MQ=255)

                                                   gTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCgg                                      >  1:7191187/1‑93 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     >  1:1983896/1‑93 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     <  1:3010316/93‑1 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     >  2:527774/1‑93 (MQ=255)

                                                        gACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGc                                 >  2:6107530/1‑93 (MQ=255)

                                                          cGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtg                               <  1:1665344/93‑1 (MQ=255)

                                                           gcgccGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtgg                              <  2:4085928/90‑1 (MQ=255)

                                                             cccGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtggtg                            <  2:5679187/92‑1 (MQ=255)

                                                             aCCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtggtg                            >  2:684331/1‑93 (MQ=255)

                                                             aCCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtggtg                            >  1:3698942/1‑93 (MQ=255)

                                                              ccGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtggtgg                           <  2:1781417/93‑1 (MQ=255)

                                                              ccGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtggtgg                           >  1:1462158/1‑93 (MQ=255)

                                                                gCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGgcg                         >  1:8832500/1‑93 (MQ=255)

                                                                   tGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTc                      <  2:5834896/93‑1 (MQ=255)

                                                                   tGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTc                      >  2:1997764/1‑93 (MQ=255)

                                                                    gATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCa                     >  2:5313023/1‑93 (MQ=255)

                                                                      ttGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGt                   <  2:3784742/93‑1 (MQ=255)

                                                                       tGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGtt                  >  1:8614722/1‑93 (MQ=255)

                                                                        gACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTc                 >  2:7064678/1‑93 (MQ=255)

                                                                        gACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTc                 <  1:9720714/93‑1 (MQ=255)

                                                                        gACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTc                 >  2:9340782/1‑93 (MQ=255)

                                                                         aCTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcg                >  2:1216960/1‑93 (MQ=255)

                                                                          cTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgc               >  1:8376470/1‑93 (MQ=255)

                                                                           tGTTTTTTGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgcc              >  2:157396/1‑93 (MQ=255)

                                                                            gTTTTTGGCACGGGCGCCGTGGCAACACGTAATGGCAAGGGTAAACAAAAACAGCTTCCAACCTCCGGCGTGATGGCGGCGCTCAGTTcgccg             >  2:8401303/1‑93 (MQ=255)

                                                                            gTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgccg             <  1:2244465/93‑1 (MQ=255)

                                                                             tttttGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgccgc            <  2:4113309/93‑1 (MQ=255)

                                                                              ttttGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCgccgcc           <  2:7334724/93‑1 (MQ=255)

                                                                                ttGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCa         <  1:3750524/93‑1 (MQ=255)

                                                                                  ggCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATc       <  1:4738248/93‑1 (MQ=255)

                                                                                     aCGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGcc    <  1:9789924/93‑1 (MQ=255)

                                                                                      cGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCt   <  2:7993982/93‑1 (MQ=255)

                                                                                       gggCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTg  <  2:2384073/93‑1 (MQ=255)

GGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTG  >  NC_000913/1053311‑1053490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATGGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGG  >  NC_000913/1053308‑1053492

AATGGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGC                                                                                             <  SRR4302540.9410323/94‑1 (MQ=60)

 ATGGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCG                                                                                            >  SRR4302540.1561114/1‑94 (MQ=60)

   GGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCC                                                                                          >  SRR4302540.1937144/1‑94 (MQ=60)

   GGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCC                                                                                          <  SRR4302540.7509682/94‑1 (MQ=60)

    GTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCG                                                                                         >  SRR4302540.5178801/1‑94 (MQ=60)

     TAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGT                                                                                        <  SRR4302540.4665477/94‑1 (MQ=60)

     TAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGT                                                                                        <  SRR4302540.6429828/94‑1 (MQ=60)

       ATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGG                                                                                      >  SRR4302540.8771546/1‑94 (MQ=60)

           GCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAAC                                                                                  <  SRR4302540.8133557/94‑1 (MQ=60)

           GCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAAC                                                                                  <  SRR4302540.8859870/94‑1 (MQ=60)

           GCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAAC                                                                                  <  SRR4302540.1257408/94‑1 (MQ=60)

             TGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACAC                                                                                <  SRR4302540.3115467/94‑1 (MQ=60)

             TGAGTTAGCGGATTATCTTCAATTAACAGCAAACGTAACCCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCGCGGGCGCCGTGGCAACAC                                                                                <  SRR4302540.1999234/94‑1 (MQ=60)

              GGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACG                                                                               <  SRR4302540.3560712/94‑1 (MQ=60)

              GGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACG                                                                               <  SRR4302540.1138093/94‑1 (MQ=60)

              GGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGAAGCACCGCCTGATTGAATGTTTTTGGCACGGGTGCCGTGGCAACACG                                                                               >  SRR4302540.3666965/1‑94 (MQ=60)

                GTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTA                                                                             <  SRR4302540.284911/94‑1 (MQ=60)

                 TTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAA                                                                            <  SRR4302540.3156500/94‑1 (MQ=60)

                 TTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAA                                                                            <  SRR4302540.2317894/94‑1 (MQ=60)

                  TAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAAC                                                                           <  SRR4302540.4992074/94‑1 (MQ=60)

                  TAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAAC                                                                           <  SRR4302540.6033106/94‑1 (MQ=60)

                  TAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAAC                                                                           <  SRR4302540.5001182/94‑1 (MQ=60)

                  TAGCGGGTTATCTTCAATTAACAGCAAACGCAAACCGTCCAGACGCACCCCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAAC                                                                           <  SRR4302540.5001181/94‑1 (MQ=60)

                   AGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACG                                                                          <  SRR4302540.6648450/94‑1 (MQ=60)

                   AGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACG                                                                          <  SRR4302540.7367895/94‑1 (MQ=60)

                    GCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGG                                                                         <  SRR4302540.1711709/94‑1 (MQ=60)

                     CGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGC                                                                        >  SRR4302540.7202356/1‑94 (MQ=60)

                     CGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGC                                                                        >  SRR4302540.4908954/1‑94 (MQ=60)

                     CGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGC                                                                        >  SRR4302540.5978105/1‑94 (MQ=60)

                     CGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGC                                                                        <  SRR4302540.8773262/94‑1 (MQ=60)

                      GGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCA                                                                       <  SRR4302540.7315702/94‑1 (MQ=60)

                        GTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAG                                                                     >  SRR4302540.1770620/1‑94 (MQ=60)

                        GTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAG                                                                     <  SRR4302540.3616519/94‑1 (MQ=60)

                        GTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCCTGGCATCACGTAACGGCAAG                                                                     >  SRR4302540.2711057/1‑94 (MQ=60)

                         TTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGCCAAGC                                                                    >  SRR4302540.1473973/1‑94 (MQ=60)

                           ATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGA                                                                  >  SRR4302540.7096536/1‑94 (MQ=60)

                             CTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAA                                                                >  SRR4302540.7385435/1‑94 (MQ=60)

                              TTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAA                                                               >  SRR4302540.5274691/1‑94 (MQ=60)

                              TTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAA                                                               <  SRR4302540.469617/94‑1 (MQ=60)

                                CAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACA                                                             >  SRR4302540.4644767/1‑94 (MQ=60)

                                CAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACA                                                             <  SRR4302540.2232536/94‑1 (MQ=60)

                                CAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACA                                                             <  SRR4302540.7669017/94‑1 (MQ=60)

                                 AATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAA                                                            >  SRR4302540.6733866/1‑94 (MQ=60)

                                 AATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAA                                                            >  SRR4302540.2486986/1‑94 (MQ=60)

                                  ATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAA                                                           >  SRR4302540.2430307/1‑94 (MQ=60)

                                  ATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAA                                                           >  SRR4302540.10051824/1‑94 (MQ=60)

                                   TTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAA                                                          <  SRR4302540.8018854/94‑1 (MQ=60)

                                    TAACAGCAAACGTAAGCCCTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAA                                                         <  SRR4302540.5276382/94‑1 (MQ=60)

                                    TAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAA                                                         <  SRR4302540.5276384/94‑1 (MQ=60)

                                     AACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAAC                                                        <  SRR4302540.7976461/94‑1 (MQ=60)

                                      ACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACA                                                       >  SRR4302540.7046037/1‑94 (MQ=60)

                                      ACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACA                                                       >  SRR4302540.4937839/1‑94 (MQ=60)

                                      ACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACA                                                       <  SRR4302540.4094775/94‑1 (MQ=60)

                                      ACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACA                                                       <  SRR4302540.4094774/94‑1 (MQ=60)

                                       CAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAG                                                      <  SRR4302540.1126095/94‑1 (MQ=60)

                                        AGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCACCACGTAACGGCAAGCGTAAACAAAAAacgc                                                     >  SRR4302540.7296085/1‑90 (MQ=60)

                                         GCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCT                                                    <  SRR4302540.8776162/94‑1 (MQ=60)

                                          CAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTT                                                   >  SRR4302540.277755/1‑94 (MQ=60)

                                          CAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTT                                                   <  SRR4302540.2759276/94‑1 (MQ=60)

                                          CAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTT                                                   <  SRR4302540.847442/94‑1 (MQ=60)

                                          CAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTT                                                   <  SRR4302540.7907703/94‑1 (MQ=60)

                                          CAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTC                                                   >  SRR4302540.2648830/1‑94 (MQ=60)

                                           AAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTC                                                  >  SRR4302540.651127/1‑94 (MQ=60)

                                           AAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTC                                                  <  SRR4302540.3743655/94‑1 (MQ=60)

                                           AAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTC                                                  >  SRR4302540.4971760/1‑94 (MQ=60)

                                            AACGTAACCCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCC                                                 <  SRR4302540.1349213/94‑1 (MQ=60)

                                            AACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCC                                                 <  SRR4302540.1349212/94‑1 (MQ=60)

                                            AACGTAAACCGTCAAGACGCACCGCCTGATTGACTCTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCC                                                 <  SRR4302540.1349211/94‑1 (MQ=60)

                                             ACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCA                                                >  SRR4302540.9655665/1‑94 (MQ=60)

                                              CGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAA                                               >  SRR4302540.9411864/1‑94 (MQ=60)

                                              CGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAA                                               >  SRR4302540.3707891/1‑94 (MQ=60)

                                               GTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCCAC                                              >  SRR4302540.4447804/1‑94 (MQ=60)

                                               GTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAAC                                              <  SRR4302540.9261282/94‑1 (MQ=60)

                                                TAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACC                                             <  SRR4302540.2775691/94‑1 (MQ=60)

                                                TAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCCCCGTGGTAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACC                                             <  SRR4302540.2775690/94‑1 (MQ=60)

                                                 AAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCT                                            >  SRR4302540.5043890/1‑94 (MQ=60)

                                                 AAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCT                                            <  SRR4302540.3726438/94‑1 (MQ=60)

                                                   ACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCC                                          <  SRR4302540.1271414/94‑1 (MQ=60)

                                                    CCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCG                                         <  SRR4302540.566435/94‑1 (MQ=60)

                                                    CCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCG                                         >  SRR4302540.6036894/1‑94 (MQ=60)

                                                     CGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGG                                        >  SRR4302540.7271342/1‑94 (MQ=60)

                                                     CGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGG                                        >  SRR4302540.8245218/1‑94 (MQ=60)

                                                      GTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGC                                       >  SRR4302540.2005404/1‑94 (MQ=60)

                                                      GTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGC                                       >  SRR4302540.6852856/1‑94 (MQ=60)

                                                      GTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGC                                       >  SRR4302540.472985/1‑94 (MQ=60)

                                                      GTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAAAAGCTTCCAACCTCCGGC                                       >  SRR4302540.9599276/1‑94 (MQ=60)

                                                       TCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCG                                      >  SRR4302540.8764904/1‑94 (MQ=60)

                                                       TCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCG                                      >  SRR4302540.5218380/1‑94 (MQ=60)

                                                       TCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCG                                      <  SRR4302540.3043434/94‑1 (MQ=60)

                                                         AAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTG                                    >  SRR4302540.4260722/1‑94 (MQ=60)

                                                             CGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGG                                <  SRR4302540.1683471/94‑1 (MQ=60)

                                                             CGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGG                                <  SRR4302540.1683466/94‑1 (MQ=60)

                                                              GCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGT                               >  SRR4302540.7238180/1‑94 (MQ=60)

                                                              GCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGT                               >  SRR4302540.6651968/1‑94 (MQ=60)

                                                              GCACCGCCTGATTGACTGTGTGTGGCACGGGCTCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGT                               <  SRR4302540.563446/94‑1 (MQ=60)

                                                               CACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTG                              >  SRR4302540.3739321/1‑94 (MQ=60)

                                                                ACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGG                             >  SRR4302540.1478096/1‑94 (MQ=60)

                                                                ACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGG                             >  SRR4302540.83450/1‑94 (MQ=60)

                                                                ACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGG                             >  SRR4302540.1130008/1‑94 (MQ=60)

                                                                 CCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGC                            <  SRR4302540.7437470/94‑1 (MQ=60)

                                                                  CGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCG                           >  SRR4302540.8934652/1‑94 (MQ=60)

                                                                   GCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGC                          >  SRR4302540.4618997/1‑94 (MQ=60)

                                                                    CCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCT                         >  SRR4302540.8994787/1‑94 (MQ=60)

                                                                     CTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTC                        >  SRR4302540.9329851/1‑94 (MQ=60)

                                                                      TGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCA                       >  SRR4302540.4785761/1‑94 (MQ=60)

                                                                        ATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGT                     >  SRR4302540.5972733/1‑94 (MQ=60)

                                                                         TTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTT                    <  SRR4302540.3250397/94‑1 (MQ=60)

                                                                         TTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTT                    >  SRR4302540.8714817/1‑94 (MQ=60)

                                                                          TGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTC                   <  SRR4302540.9882013/94‑1 (MQ=60)

                                                                           GACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCG                  <  SRR4302540.9834909/94‑1 (MQ=60)

                                                                           GACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCG                  <  SRR4302540.9834908/94‑1 (MQ=60)

                                                                           GACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCG                  <  SRR4302540.7247167/94‑1 (MQ=60)

                                                                            ACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGC                 >  SRR4302540.8473670/1‑94 (MQ=60)

                                                                               GTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGC              <  SRR4302540.2268584/94‑1 (MQ=60)

                                                                                TTTTTTGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCC             <  SRR4302540.4181072/94‑1 (MQ=60)

                                                                                 TTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCC            <  SRR4302540.8919492/94‑1 (MQ=60)

                                                                                   TTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCAT          <  SRR4302540.3791444/94‑1 (MQ=60)

                                                                                     GGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCG        <  SRR4302540.6656918/94‑1 (MQ=60)

                                                                                     GGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCG        <  SRR4302540.4788823/94‑1 (MQ=60)

                                                                                       CACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCC      >  SRR4302540.1801462/1‑94 (MQ=60)

                                                                                        ACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCT     <  SRR4302540.9904613/94‑1 (MQ=60)

                                                                                        ACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCT     <  SRR4302540.2996176/94‑1 (MQ=60)

                                                                                         CGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTG    <  SRR4302540.9431075/94‑1 (MQ=60)

                                                                                          GGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGG   >  SRR4302540.89433/1‑94 (MQ=60)

                                                                                          GGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGG   >  SRR4302540.89431/1‑94 (MQ=60)

                                                                                          GGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGG   >  SRR4302540.4888478/1‑94 (MQ=60)

                                                                                           GGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGG  <  SRR4302540.10122723/94‑1 (MQ=60)

AATGGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGG  >  NC_000913/1053308‑1053492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`