Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,056,041 A→G E186E (GAA→GAG)  torT → TorT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,056,0410AG100.0% 666.7 / NA 210E186E (GAA→GAG) torTTorT
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (91/119);  total (91/119)

Only 100 of 219 total aligned reads displayed.

ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT  >  NC_000913/1055951‑1056130
                                                                                          |                                                                                         
atatCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAggg                                                                                         >  2:1492660/1‑93 (MQ=255)
  atCTGGTGCAATGGGCGCACGGTAAACCACTGAATTTGCTGTTCATGCCCGGCCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGtt                                                                                       <  2:1831360/93‑1 (MQ=255)
  atCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGtt                                                                                       <  1:4597735/93‑1 (MQ=255)
     tGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTc                                                                                    <  1:5741099/93‑1 (MQ=255)
     tGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTc                                                                                    >  2:8925093/1‑93 (MQ=255)
      ggTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTcg                                                                                   >  1:8440768/1‑93 (MQ=255)
            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             <  2:4269882/93‑1 (MQ=255)
            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             >  2:2941997/1‑93 (MQ=255)
               gggccACGCTAAACTACTGAATGTGCTGTTGATGCCGGAACCCGATAACGCCGGGGACAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAt                                                                          <  2:9300651/89‑1 (MQ=255)
               ggCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAt                                                                          <  1:1673273/93‑1 (MQ=255)
                gcgcACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAtt                                                                         <  1:10012691/93‑1 (MQ=255)
                gcgcACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAtt                                                                         <  2:535571/93‑1 (MQ=255)
                gcgcACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAtt                                                                         <  2:64980/93‑1 (MQ=255)
                   cACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGATTTCGCGCAGCCATTGcc                                                                      >  1:9628813/1‑93 (MQ=255)
                    aCGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCg                                                                     >  1:3603378/1‑93 (MQ=255)
                    aCGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCg                                                                     <  1:4755751/93‑1 (MQ=255)
                        tAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAg                                                                 >  2:4802149/1‑93 (MQ=255)
                        tAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAg                                                                 >  1:2310162/1‑93 (MQ=255)
                        tAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAg                                                                 >  2:9629895/1‑93 (MQ=255)
                        tAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAg                                                                 >  1:8369919/1‑93 (MQ=255)
                         aaaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGc                                                                >  2:6431111/1‑93 (MQ=255)
                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              <  2:448928/93‑1 (MQ=255)
                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              <  1:9091981/93‑1 (MQ=255)
                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              <  2:9842576/93‑1 (MQ=255)
                            ccACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCg                                                             >  2:2169689/1‑93 (MQ=255)
                            ccACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCg                                                             <  2:345670/93‑1 (MQ=255)
                             cACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCGGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCTGGAAGCCCgg                                                            <  2:7944451/93‑1 (MQ=255)
                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCggg                                                           >  1:1514246/1‑92 (MQ=255)
                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           <  2:5838109/93‑1 (MQ=255)
                               cTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTg                                                          <  1:4528534/93‑1 (MQ=255)
                               cTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTg                                                          >  2:8441104/1‑93 (MQ=255)
                                 gAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCg                                                        >  2:4039017/1‑93 (MQ=255)
                                 gAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCg                                                        >  2:306309/1‑93 (MQ=255)
                                  aaTGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGt                                                       <  2:4409121/93‑1 (MQ=255)
                                  aaTGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGt                                                       >  2:1553714/1‑93 (MQ=255)
                                    tgtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAt                                                     >  2:2186693/1‑93 (MQ=255)
                                     gtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGTGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAtt                                                    <  2:8832279/93‑1 (MQ=255)
                                     gtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAtt                                                    <  1:9524023/93‑1 (MQ=255)
                                       gCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgt                                                  <  2:199700/93‑1 (MQ=255)
                                       gCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgt                                                  >  1:3923013/1‑93 (MQ=255)
                                        cTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgtt                                                 <  1:7941591/93‑1 (MQ=255)
                                         tGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgttg                                                <  1:5240649/93‑1 (MQ=255)
                                          gTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGa                                               <  1:7958667/93‑1 (MQ=255)
                                           gtGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGat                                              <  1:2261045/92‑1 (MQ=255)
                                            tGATGCCCGGACCCGATAACGCTGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGata                                             <  1:7656034/93‑1 (MQ=255)
                                            tGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGata                                             <  1:3994649/93‑1 (MQ=255)
                                             gATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGatat                                            >  2:9431525/1‑93 (MQ=255)
                                              aTGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAtt                                           <  2:6780192/93‑1 (MQ=255)
                                               tGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTg                                          >  1:638145/1‑93 (MQ=255)
                                                gCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgc                                         <  2:1238399/93‑1 (MQ=255)
                                                gCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgc                                         <  1:5041507/93‑1 (MQ=255)
                                                 cccGGACCCGGTCACGCCGGGGGCAGTAAGGCGATGGTCGCGGGTTTTCGCGCAGCCATTGCCGGCCGCCCGGTGCGTCTTGTTGATATTgca                                        <  1:8986870/93‑2 (MQ=255)
                                                 cccGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgcg                                        >  1:9725511/1‑93 (MQ=255)
                                                  ccGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgcgc                                       >  2:5906129/1‑93 (MQ=255)
                                                    ggACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCtt                                     <  1:3838204/93‑1 (MQ=255)
                                                     gACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTg                                    <  1:2692873/93‑1 (MQ=255)
                                                     gACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTg                                    >  1:8744843/1‑93 (MQ=255)
                                                      aCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTgg                                   <  2:2277004/93‑1 (MQ=255)
                                                       cccGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGt                                  >  1:154660/1‑93 (MQ=255)
                                                         cGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGa                                >  2:1522710/1‑93 (MQ=255)
                                                         cGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGa                                <  1:9275397/93‑1 (MQ=255)
                                                         cGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATCGTTGATATTGCGCTTGGTGa                                >  2:336695/1‑93 (MQ=255)
                                                          gATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAt                               >  2:1726922/1‑93 (MQ=255)
                                                          gATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAt                               <  2:9964371/93‑1 (MQ=255)
                                                           aTAACGCCGGGGGCAGTAAGGAGCTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATa                              <  2:5501803/93‑1 (MQ=255)
                                                            tAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATaa                             >  1:5261252/1‑93 (MQ=255)
                                                             aaCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAc                            >  2:6528239/1‑93 (MQ=255)
                                                              aCGCCGGGGGCAGTAAGGAGATGGTCGAGGGATTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGATGTAATTGCGCTTGGCGATAAcc                           >  2:5600648/1‑92 (MQ=255)
                                                                gCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGat                         <  1:3292819/93‑1 (MQ=255)
                                                                 ccGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGata                        >  2:1594463/1‑93 (MQ=255)
                                                                  cGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGatat                       <  1:1169950/93‑1 (MQ=255)
                                                                  cGGGGGCAGTAAGAAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGatat                       <  2:1658548/93‑1 (MQ=255)
                                                                    ggggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTg                     <  1:3099475/93‑1 (MQ=255)
                                                                     gggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGa                    <  1:4172321/93‑1 (MQ=255)
                                                                     gggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGa                    <  2:6559309/93‑1 (MQ=255)
                                                                     gggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGa                    <  2:3676131/93‑1 (MQ=255)
                                                                     gggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGa                    <  2:2617737/93‑1 (MQ=255)
                                                                     gggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGa                    <  2:2294662/93‑1 (MQ=255)
                                                                       gCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGaaa                  >  2:4851238/1‑93 (MQ=255)
                                                                        cAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAt                 <  1:6805913/93‑1 (MQ=255)
                                                                        cAGTAAGGAGATGGGCGAGTGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAt                 <  1:4846370/93‑1 (MQ=255)
                                                                          gTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATcc               >  1:8465406/1‑93 (MQ=255)
                                                                          gTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATcc               <  2:3161122/93‑1 (MQ=255)
                                                                           tAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCa              <  2:6953497/93‑1 (MQ=255)
                                                                            aaGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAg             >  2:1518372/1‑93 (MQ=255)
                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            >  1:7374011/1‑93 (MQ=255)
                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            >  2:3765321/1‑93 (MQ=255)
                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            <  1:4977452/93‑1 (MQ=255)
                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            <  1:5915125/93‑1 (MQ=255)
                                                                              ggAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCg           >  2:4997989/1‑93 (MQ=255)
                                                                               gagaTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGt          <  2:9885472/93‑1 (MQ=255)
                                                                               gagaTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGt          >  1:5149772/1‑93 (MQ=255)
                                                                                agaTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTa         >  2:9715006/1‑93 (MQ=255)
                                                                                agaTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTa         >  2:7456993/1‑93 (MQ=255)
                                                                                agaTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTa         <  2:3749241/93‑1 (MQ=255)
                                                                                  aTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAc       <  1:1267593/93‑1 (MQ=255)
                                                                                  aTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAc       <  2:8144455/93‑1 (MQ=255)
                                                                                   tGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAcc      >  2:7826014/1‑93 (MQ=255)
                                                                                   tGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAcc      >  2:7288714/1‑93 (MQ=255)
                                                                                      tCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGt   <  1:2401714/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT  >  NC_000913/1055951‑1056130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCAG  >  NC_000913/1055948‑1056134
                                                                                             |                                                                                             
GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAG                                                                                               <  SRR4302540.5073639/94‑1 (MQ=60)
GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAG                                                                                               <  SRR4302540.9191023/94‑1 (MQ=60)
 CGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGG                                                                                              >  SRR4302540.3044937/1‑94 (MQ=60)
  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                             >  SRR4302540.5064971/1‑94 (MQ=60)
  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                             >  SRR4302540.8787946/1‑94 (MQ=60)
  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                             <  SRR4302540.510905/94‑1 (MQ=60)
     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                          >  SRR4302540.2384220/1‑94 (MQ=60)
     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                          <  SRR4302540.8627978/94‑1 (MQ=60)
     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                          <  SRR4302540.4647172/94‑1 (MQ=60)
       CTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTC                                                                                        <  SRR4302540.7023994/94‑1 (MQ=60)
       CTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTC                                                                                        >  SRR4302540.4661358/1‑94 (MQ=60)
        TGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCG                                                                                       <  SRR4302540.5804381/94‑1 (MQ=60)
        TGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCG                                                                                       >  SRR4302540.8538749/1‑94 (MQ=60)
              AATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGC                                                                                 >  SRR4302540.1256875/1‑94 (MQ=60)
                  GGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATT                                                                             <  SRR4302540.1691456/94‑1 (MQ=60)
                  GGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATT                                                                             <  SRR4302540.9719201/94‑1 (MQ=60)
                   GCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTG                                                                            <  SRR4302540.10129271/94‑1 (MQ=60)
                     GCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCC                                                                          >  SRR4302540.2530415/1‑94 (MQ=60)
                     GCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGATTTCGCGCAGCCATTGCC                                                                          >  SRR4302540.9742279/1‑94 (MQ=60)
                      CACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCG                                                                         >  SRR4302540.3642755/1‑94 (MQ=60)
                       ACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGG                                                                        <  SRR4302540.4806493/94‑1 (MQ=60)
                         GGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAA                                                                      >  SRR4302540.4207726/1‑94 (MQ=60)
                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAG                                                                     >  SRR4302540.2335029/1‑94 (MQ=60)
                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAG                                                                     >  SRR4302540.3468960/1‑94 (MQ=60)
                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAG                                                                     <  SRR4302540.4833173/94‑1 (MQ=60)
                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAG                                                                     >  SRR4302540.8467058/1‑94 (MQ=60)
                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAG                                                                     >  SRR4302540.9779445/1‑94 (MQ=60)
                              ACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCG                                                                 <  SRR4302540.9201215/94‑1 (MQ=60)
                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGT                                                               <  SRR4302540.5315805/94‑1 (MQ=60)
                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGG                                                               >  SRR4302540.1530986/1‑94 (MQ=60)
                                 ACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                              <  SRR4302540.3993219/94‑1 (MQ=60)
                                  CTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGC                                                             <  SRR4302540.4577563/94‑1 (MQ=60)
                                  CTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGC                                                             <  SRR4302540.8986578/94‑1 (MQ=60)
                                    GAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGT                                                           >  SRR4302540.2308088/1‑94 (MQ=60)
                                      ATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAT                                                         >  SRR4302540.4146060/1‑94 (MQ=60)
                                        GTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTG                                                       <  SRR4302540.3943642/94‑1 (MQ=60)
                                        GTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTG                                                       <  SRR4302540.9636792/94‑1 (MQ=60)
                                        GTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTG                                                       <  SRR4302540.9636791/94‑1 (MQ=60)
                                         TGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGT                                                      >  SRR4302540.3965468/1‑94 (MQ=60)
                                         TGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGT                                                      <  SRR4302540.3328219/94‑1 (MQ=60)
                                           CTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTG                                                    <  SRR4302540.8034140/94‑1 (MQ=60)
                                           CTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTG                                                    >  SRR4302540.2206117/1‑94 (MQ=60)
                                            TGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGA                                                   <  SRR4302540.5297819/94‑1 (MQ=60)
                                             GTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGAT                                                  <  SRR4302540.8051428/94‑1 (MQ=60)
                                             GTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGAT                                                  <  SRR4302540.3157712/94‑1 (MQ=60)
                                              GTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATA                                                 <  SRR4302540.2285302/94‑1 (MQ=60)
                                               TGATGCCCGGACCCGATAACGCTGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAT                                                <  SRR4302540.7742235/94‑1 (MQ=60)
                                               TGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAT                                                <  SRR4302540.4037640/94‑1 (MQ=60)
                                                 ATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTG                                              >  SRR4302540.644932/1‑94 (MQ=60)
                                                 ATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTG                                              >  SRR4302540.644931/1‑94 (MQ=60)
                                                 ATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTG                                              >  SRR4302540.8527599/1‑94 (MQ=60)
                                                   GCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCG                                            <  SRR4302540.5096039/94‑1 (MQ=60)
                                                   GCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCG                                            >  SRR4302540.9839740/1‑94 (MQ=60)
                                                    CCCGGACCCGGTCACGCCGGGGGCAGTAAGGCGATGGTCGCGGGTTTTCGCGCAGCCATTGCCGGCCGCCCGGTGCGTCTTGTTGATATTGCAC                                           <  SRR4302540.9094275/94‑1 (MQ=60)
                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                        <  SRR4302540.3879947/94‑1 (MQ=60)
                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                        >  SRR4302540.8846333/1‑94 (MQ=60)
                                                        GACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGG                                       <  SRR4302540.2721952/94‑1 (MQ=60)
                                                         ACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGT                                      >  SRR4302540.156240/1‑94 (MQ=60)
                                                         ACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGT                                      <  SRR4302540.5824747/94‑1 (MQ=60)
                                                          CCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTG                                     <  SRR4302540.4598188/94‑1 (MQ=60)
                                                           CCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGA                                    <  SRR4302540.9278054/94‑1 (MQ=60)
                                                            CGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAT                                   <  SRR4302540.9386294/94‑1 (MQ=60)
                                                            CGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAT                                   >  SRR4302540.134068/1‑94 (MQ=60)
                                                              ATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAA                                 >  SRR4302540.5318650/1‑94 (MQ=60)
                                                              ATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAA                                 >  SRR4302540.8036783/1‑94 (MQ=60)
                                                               TAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAC                                <  SRR4302540.8257403/94‑1 (MQ=60)
                                                               TAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAC                                <  SRR4302540.4960840/94‑1 (MQ=60)
                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACG                               <  SRR4302540.1122815/94‑1 (MQ=60)
                                                                  CGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGAT                             >  SRR4302540.8560385/1‑94 (MQ=60)
                                                                   GCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATA                            <  SRR4302540.3328848/94‑1 (MQ=60)
                                                                    GCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAT                           <  SRR4302540.7881629/94‑1 (MQ=60)
                                                                     CGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATT                          <  SRR4302540.1182066/94‑1 (MQ=60)
                                                                     CGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATT                          <  SRR4302540.5173377/94‑1 (MQ=60)
                                                                       GGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGA                        <  SRR4302540.3133430/94‑1 (MQ=60)
                                                                        GGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAA                       <  SRR4302540.4217586/94‑1 (MQ=60)
                                                                         GGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAA                      <  SRR4302540.9826108/94‑1 (MQ=60)
                                                                          GCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAT                     >  SRR4302540.2248853/1‑94 (MQ=60)
                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                    <  SRR4302540.5418833/94‑1 (MQ=60)
                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                    <  SRR4302540.6881224/94‑1 (MQ=60)
                                                                           CAGTAAGGAGATGGGCGAGTGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                    <  SRR4302540.4898289/94‑1 (MQ=60)
                                                                            AGTAAGTAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCC                   <  SRR4302540.6836411/94‑1 (MQ=60)
                                                                            AGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCC                   >  SRR4302540.8563693/1‑94 (MQ=60)
                                                                            AGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCA                   >  SRR4302540.5873883/1‑94 (MQ=60)
                                                                             GTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCA                  >  SRR4302540.5223280/1‑94 (MQ=60)
                                                                             GTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCA                  >  SRR4302540.3879387/1‑94 (MQ=60)
                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG                 <  SRR4302540.2881023/94‑1 (MQ=60)
                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG                 >  SRR4302540.5036426/1‑94 (MQ=60)
                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC                <  SRR4302540.158239/94‑1 (MQ=60)
                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC                >  SRR4302540.7456201/1‑94 (MQ=60)
                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG               <  SRR4302540.5031329/94‑1 (MQ=60)
                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG               <  SRR4302540.5980471/94‑1 (MQ=60)
                                                                                 GGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGT              >  SRR4302540.5205605/1‑94 (MQ=60)
                                                                                   AGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAA            >  SRR4302540.915408/1‑94 (MQ=60)
                                                                                   AGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGAGTAA            >  SRR4302540.1557725/1‑94 (MQ=60)
                                                                                   AGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGATGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAA            >  SRR4302540.7541143/1‑94 (MQ=60)
                                                                                     ATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACC          <  SRR4302540.1280623/94‑1 (MQ=60)
                                                                                      TGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCT         <  SRR4302540.7874908/94‑1 (MQ=60)
                                                                                        GTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGT       >  SRR4302540.430399/1‑94 (MQ=60)
                                                                                         TCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT      <  SRR4302540.2427612/94‑1 (MQ=60)
                                                                                           GAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC    >  SRR4302540.3337283/1‑94 (MQ=60)
                                                                                           GAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC    >  SRR4302540.6391812/1‑94 (MQ=60)
                                                                                            AGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCA   >  SRR4302540.2019281/1‑94 (MQ=60)
                                                                                             GGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCAG  <  SRR4302540.3136163/94‑1 (MQ=60)
                                                                                             GGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCAG  <  SRR4302540.6948925/94‑1 (MQ=60)
                                                                                             |                                                                                             
GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCAG  >  NC_000913/1055948‑1056134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑