Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,056,882 T→C Y99C (TAC→TGC)  torR ← TorR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,056,8820TC100.0% 635.3 / NA 199Y99C (TAC→TGC) torRTorR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (95/104);  total (95/104)

Only 100 of 209 total aligned reads displayed.

TGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGTAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCT  >  NC_000913/1056792‑1056971
                                                                                          |                                                                                         
tgCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCaa                                                                                         <  1:2216868/93‑1 (MQ=255)
 gCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTCGGTGACGCAAt                                                                                        <  2:3766041/93‑1 (MQ=255)
  cGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATc                                                                                       <  2:7140088/93‑1 (MQ=255)
    gTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGt                                                                                     >  1:1197774/1‑93 (MQ=255)
    gTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGt                                                                                     >  2:6111519/1‑93 (MQ=255)
    gTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGt                                                                                     >  2:1565910/1‑93 (MQ=255)
    gTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGt                                                                                     >  2:1507091/1‑93 (MQ=255)
     ttGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTc                                                                                    <  2:3633088/93‑1 (MQ=255)
     ttGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTc                                                                                    >  1:4503269/1‑93 (MQ=255)
     ttGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGGTTGGTGTCGCAATCGTc                                                                                    >  2:2384029/1‑93 (MQ=255)
      tGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCt                                                                                   <  2:9697286/93‑1 (MQ=255)
          cTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTgcgc                                                                               <  1:6589086/93‑1 (MQ=255)
          cTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATAGTCTgcgc                                                                               >  2:2797889/1‑93 (MQ=255)
           ttGTCGCGCGAGGTCGATGCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGcc                                                                              <  2:9072579/93‑1 (MQ=255)
            tGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGccc                                                                             <  1:1664630/93‑1 (MQ=255)
             gTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGTGCCCa                                                                            <  1:2009567/93‑1 (MQ=255)
             gTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCa                                                                            >  2:6145269/1‑93 (MQ=255)
              tCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCCCCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCAt                                                                           <  2:6628701/93‑1 (MQ=255)
                 cgcgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTc                                                                        <  2:7248410/93‑1 (MQ=255)
                 cgcgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTc                                                                        >  2:4985072/1‑93 (MQ=255)
                  gcgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTcc                                                                       <  1:10031865/93‑1 (MQ=255)
                   cgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCa                                                                      >  1:5983503/1‑93 (MQ=255)
                   cgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCa                                                                      <  1:5627751/93‑1 (MQ=255)
                   cgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCa                                                                      <  1:2442182/93‑1 (MQ=255)
                     aGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGc                                                                    <  1:8410501/93‑1 (MQ=255)
                      ggTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGcc                                                                   >  2:3102691/1‑93 (MQ=255)
                      ggTCGATTCGCCAGAGCACATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGcc                                                                   <  1:4824501/93‑1 (MQ=255)
                        tCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCca                                                                 <  2:404722/93‑1 (MQ=255)
                         cGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaa                                                                >  1:3735117/1‑93 (MQ=255)
                          gATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaac                                                               >  2:1722278/1‑93 (MQ=255)
                          gATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaac                                                               >  1:3336581/1‑93 (MQ=255)
                           aTTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaaca                                                              <  2:2745094/93‑1 (MQ=255)
                           aTTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaaca                                                              >  1:7021495/1‑93 (MQ=255)
                             tCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAAt                                                            >  2:9536366/1‑93 (MQ=255)
                              cGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATa                                                           <  2:1409713/93‑1 (MQ=255)
                              cGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATa                                                           <  2:6702467/93‑1 (MQ=255)
                               gCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATAc                                                          <  1:5213505/93‑1 (MQ=255)
                                 cAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACgg                                                        >  2:4977495/1‑93 (MQ=255)
                                  agagCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGt                                                       >  2:25973/1‑93 (MQ=255)
                                   gagCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTc                                                      >  1:8242403/1‑93 (MQ=255)
                                   gagCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTc                                                      <  2:7578572/93‑1 (MQ=255)
                                      cAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAAt                                                   <  1:1283103/93‑1 (MQ=255)
                                      cAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAAt                                                   <  1:7240491/93‑1 (MQ=255)
                                        taTTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCACCAATACGGTCAATcc                                                 <  1:3870312/92‑1 (MQ=255)
                                        gATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATcc                                                 <  1:6651992/93‑1 (MQ=255)
                                        gATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATcc                                                 >  2:9564896/1‑93 (MQ=255)
                                          tttttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGa                                               >  2:8740516/1‑93 (MQ=255)
                                          tttttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGa                                               >  2:2165489/1‑93 (MQ=255)
                                          tttttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGa                                               <  2:861036/93‑1 (MQ=255)
                                           ttttCCCCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGAt                                              <  1:3020959/93‑1 (MQ=255)
                                           ttttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGAt                                              >  1:3669775/1‑93 (MQ=255)
                                              tCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGc                                           <  1:3591683/93‑1 (MQ=255)
                                              tCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGc                                           <  2:9240919/93‑1 (MQ=255)
                                              tCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGc                                           <  2:5183195/93‑1 (MQ=255)
                                                ccccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTg                                         <  2:1988749/92‑1 (MQ=255)
                                                 cccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGc                                        <  1:4709244/93‑1 (MQ=255)
                                                  ccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCg                                       >  1:4063110/1‑93 (MQ=255)
                                                    gTACTTCCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTc                                     <  1:1932112/93‑1 (MQ=255)
                                                     tactacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTcg                                    >  1:2725903/1‑92 (MQ=255)
                                                     tactacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTcc                                    >  2:8844604/1‑93 (MQ=255)
                                                      actacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCg                                   >  1:9658096/1‑93 (MQ=255)
                                                       ctacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCgg                                  >  2:1036852/1‑93 (MQ=255)
                                                        tacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCgga                                 >  2:3414464/1‑92 (MQ=255)
                                                        tacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGt                                 >  1:6093622/1‑93 (MQ=255)
                                                        tacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGt                                 <  1:6420687/93‑1 (MQ=255)
                                                         acCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTa                                >  2:1175288/1‑93 (MQ=255)
                                                             gTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCa                            >  2:7063870/1‑93 (MQ=255)
                                                             gTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCa                            <  2:4859343/93‑1 (MQ=255)
                                                               tCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGa                          >  1:9811905/1‑93 (MQ=255)
                                                                 gcgcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaat                        >  1:5777517/1‑93 (MQ=255)
                                                                 gcgcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaat                        >  2:6528934/1‑93 (MQ=255)
                                                                  cgcAGTTCCAGCGGTTTGGTGACGCGATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaata                       <  2:5352377/93‑1 (MQ=255)
                                                                  cgcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGAGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaata                       <  1:6212394/93‑1 (MQ=255)
                                                                   gcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaataa                      <  2:7414226/93‑1 (MQ=255)
                                                                   gcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaataa                      >  2:5464214/1‑93 (MQ=255)
                                                                   gcAGCTCCAGCGGTTTGGTGACCCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaataa                      <  2:2525839/93‑1 (MQ=255)
                                                                     cgTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATc                    <  2:6261447/92‑1 (MQ=255)
                                                                      gTTCCGGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATcc                   <  2:6407399/93‑1 (MQ=255)
                                                                      gTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGACTAATcc                   >  1:5061325/1‑93 (MQ=255)
                                                                      gTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATcc                   >  1:6711182/1‑93 (MQ=255)
                                                                      gTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATcc                   >  1:3812739/1‑93 (MQ=255)
                                                                       ttCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATccc                  <  2:258785/93‑1 (MQ=255)
                                                                         ccAGCGGTGTGGTAACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCa                <  2:4311626/93‑1 (MQ=255)
                                                                          cAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCAc               >  1:2822653/1‑93 (MQ=255)
                                                                          cAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCAc               >  1:3152497/1‑93 (MQ=255)
                                                                           aGCGGTTTGGTGACCCAATCGTCTGCACCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCAcc              <  1:3826372/93‑1 (MQ=255)
                                                                              ggTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGtt           >  1:8761649/1‑93 (MQ=255)
                                                                               gTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTg          <  1:1422208/93‑1 (MQ=255)
                                                                               gTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTg          >  2:1868717/1‑93 (MQ=255)
                                                                                tttGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGa         >  2:9172093/1‑93 (MQ=255)
                                                                                 ttGGTGGCGCAATCGTCTGCGCCCATTACCAGCCCAACAATACGGTCAAGCCGATCGCTGCGTCCGGTAGCCAGAATAATCCCCACCGTTGAg        <  1:8896387/93‑1 (MQ=255)
                                                                                  tGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGc       <  1:1168082/93‑1 (MQ=255)
                                                                                  tGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGc       <  2:4684158/93‑1 (MQ=255)
                                                                                   ggTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCg      >  1:6861147/1‑93 (MQ=255)
                                                                                    gTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGt     <  1:9631832/93‑1 (MQ=255)
                                                                                     tGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGtt    >  1:9761532/1‑93 (MQ=255)
                                                                                       aCGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTtct  <  1:4218358/93‑1 (MQ=255)
                                                                                       aCGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTtct  >  2:8100597/1‑93 (MQ=255)
                                                                                       aCGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTtct  >  1:9296571/1‑93 (MQ=255)
                                                                                       aCGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTtct  <  1:7388904/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGTAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCT  >  NC_000913/1056792‑1056971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTGTGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGTAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCTCGCA  >  NC_000913/1056789‑1056975
                                                                                             |                                                                                             
GTGTGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGC                                                                                               >  SRR4302540.6730265/1‑94 (MQ=60)
 TGTGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCA                                                                                              <  SRR4302540.6533602/94‑1 (MQ=60)
   TGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAAT                                                                                            <  SRR4302540.2240786/94‑1 (MQ=60)
    GCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATC                                                                                           <  SRR4302540.9303940/94‑1 (MQ=60)
    GCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATC                                                                                           <  SRR4302540.1197471/94‑1 (MQ=60)
    GCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATC                                                                                           <  SRR4302540.6676047/94‑1 (MQ=60)
    GCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATC                                                                                           <  SRR4302540.3119662/94‑1 (MQ=60)
    GCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATC                                                                                           <  SRR4302540.6247903/94‑1 (MQ=60)
      GGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCCGTTCCAGCGGTTTGGTGACGCAATCGT                                                                                         >  SRR4302540.2827086/1‑94 (MQ=60)
      GGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGT                                                                                         >  SRR4302540.1210095/1‑94 (MQ=60)
       GTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTC                                                                                        >  SRR4302540.4552083/1‑94 (MQ=60)
       GTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTC                                                                                        >  SRR4302540.4552084/1‑94 (MQ=60)
          GAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGC                                                                                     <  SRR4302540.6096286/94‑1 (MQ=60)
           AGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCG                                                                                    >  SRR4302540.1743616/1‑94 (MQ=60)
             CTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCC                                                                                  <  SRR4302540.6662065/94‑1 (MQ=60)
             CTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCC                                                                                  >  SRR4302540.372718/1‑94 (MQ=60)
               TGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCA                                                                                <  SRR4302540.1682755/94‑1 (MQ=60)
                GTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGTGCCCAT                                                                               <  SRR4302540.2031301/94‑1 (MQ=60)
                  CGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTT                                                                             <  SRR4302540.1577497/94‑1 (MQ=60)
                  CGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTT                                                                             <  SRR4302540.3894983/94‑1 (MQ=60)
                     GCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCA                                                                          >  SRR4302540.6049768/1‑94 (MQ=60)
                     GCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCA                                                                          <  SRR4302540.6900753/94‑1 (MQ=60)
                     GCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCA                                                                          <  SRR4302540.10148560/94‑1 (MQ=60)
                      CGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAG                                                                         <  SRR4302540.5689693/94‑1 (MQ=60)
                      CGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAG                                                                         <  SRR4302540.2468477/94‑1 (MQ=60)
                        AGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCC                                                                       <  SRR4302540.8508121/94‑1 (MQ=60)
                         GGTCGATTCGCCAGAGCACATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCC                                                                      <  SRR4302540.4876165/94‑1 (MQ=60)
                          GTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCA                                                                     >  SRR4302540.4718410/1‑94 (MQ=60)
                          GTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCA                                                                     >  SRR4302540.1113936/1‑94 (MQ=60)
                           TCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAA                                                                    <  SRR4302540.2506528/94‑1 (MQ=60)
                           TCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAA                                                                    >  SRR4302540.3775870/1‑94 (MQ=60)
                            CGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAAC                                                                   >  SRR4302540.3373220/1‑94 (MQ=60)
                            CGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAAC                                                                   >  SRR4302540.4388137/1‑94 (MQ=60)
                             GATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACA                                                                  >  SRR4302540.7099482/1‑94 (MQ=60)
                                 CGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATAC                                                              <  SRR4302540.8062242/94‑1 (MQ=60)
                                 CGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATAC                                                              <  SRR4302540.8910917/94‑1 (MQ=60)
                                 CGCCAGAACAGATTGTTCACCCGTACCACCCATTCGCCCAGGTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATAC                                                              <  SRR4302540.8062243/94‑1 (MQ=60)
                                  GCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACG                                                             <  SRR4302540.5270318/94‑1 (MQ=60)
                                   CCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGG                                                            >  SRR4302540.3361691/1‑94 (MQ=60)
                                     AGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTC                                                          >  SRR4302540.8338194/1‑94 (MQ=60)
                                     AGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTC                                                          >  SRR4302540.9901539/1‑94 (MQ=60)
                                     AGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTC                                                          >  SRR4302540.5065844/1‑94 (MQ=60)
                                      gaggcgagTTTTCACCCGGACTACCAGTTCGCCCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCA                                                         <  SRR4302540.7666004/86‑1 (MQ=60)
                                      GAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCA                                                         <  SRR4302540.720609/94‑1 (MQ=60)
                                       AGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAA                                                        >  SRR4302540.1257344/1‑94 (MQ=60)
                                         CAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATC                                                      <  SRR4302540.7321254/94‑1 (MQ=60)
                                         CAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATC                                                      <  SRR4302540.3694877/94‑1 (MQ=60)
                                         CAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATC                                                      <  SRR4302540.1296330/94‑1 (MQ=60)
                                          AGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCC                                                     <  SRR4302540.7355507/94‑1 (MQ=60)
                                           TATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCACCAATACGGTCAATCCG                                                    <  SRR4302540.3912385/94‑1 (MQ=60)
                                           GATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCG                                                    <  SRR4302540.6725572/94‑1 (MQ=60)
                                            ATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGA                                                   <  SRR4302540.3464236/94‑1 (MQ=60)
                                            ATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGA                                                   >  SRR4302540.5338139/1‑94 (MQ=60)
                                             TTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGAT                                                  >  SRR4302540.3709921/1‑94 (MQ=60)
                                              TTTTCCCCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATC                                                 <  SRR4302540.3054161/94‑1 (MQ=60)
                                              TTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATC                                                 <  SRR4302540.1990928/94‑1 (MQ=60)
                                                 TCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCT                                              <  SRR4302540.3630918/94‑1 (MQ=60)
                                                    CCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCG                                           <  SRR4302540.4759572/94‑1 (MQ=60)
                                                    CCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCG                                           >  SRR4302540.4106921/1‑94 (MQ=60)
                                                     CCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGT                                          >  SRR4302540.9520702/1‑94 (MQ=60)
                                                       GTACTTCCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCC                                        <  SRR4302540.1953170/94‑1 (MQ=60)
                                                       GTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCG                                        >  SRR4302540.2755307/1‑94 (MQ=60)
                                                       CTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCC                                        <  SRR4302540.2297827/94‑1 (MQ=60)
                                                        TACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCG                                       >  SRR4302540.9771790/1‑94 (MQ=60)
                                                          CTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGT                                     >  SRR4302540.6161449/1‑94 (MQ=60)
                                                           caccagtcccccCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTA                                    <  SRR4302540.8501925/82‑1 (MQ=60)
                                                           TACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTA                                    <  SRR4302540.6492150/94‑1 (MQ=60)
                                                           CACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTA                                    <  SRR4302540.8682802/94‑1 (MQ=60)
                                                            ACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAA                                   >  SRR4302540.1353389/1‑94 (MQ=60)
                                                              CAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACC                                 <  SRR4302540.5144570/94‑1 (MQ=60)
                                                               AGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCA                                <  SRR4302540.2104736/94‑1 (MQ=60)
                                                               AGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCA                                >  SRR4302540.7048279/1‑94 (MQ=60)
                                                                GTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAG                               >  SRR4302540.4841084/1‑94 (MQ=60)
                                                                GTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAG                               >  SRR4302540.2988310/1‑94 (MQ=60)
                                                                 TTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGA                              >  SRR4302540.9926735/1‑94 (MQ=60)
                                                                 TTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGA                              >  SRR4302540.3805642/1‑94 (MQ=60)
                                                                   CGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAAT                            <  SRR4302540.2947047/94‑1 (MQ=60)
                                                                   CGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAAT                            >  SRR4302540.5841336/1‑94 (MQ=60)
                                                                     CGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAA                          >  SRR4302540.9772061/1‑94 (MQ=60)
                                                                     CGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAA                          <  SRR4302540.6281522/94‑1 (MQ=60)
                                                                     CGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGAGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAA                          <  SRR4302540.6281521/94‑1 (MQ=60)
                                                                       CAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATC                        <  SRR4302540.4051631/94‑1 (MQ=60)
                                                                        AGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGACTAATCC                       >  SRR4302540.5116045/1‑94 (MQ=60)
                                                                        AGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCC                       >  SRR4302540.3854258/1‑94 (MQ=60)
                                                                        AGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCC                       >  SRR4302540.5792810/1‑94 (MQ=60)
                                                                        AGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCC                       >  SRR4302540.6785236/1‑94 (MQ=60)
                                                                        AGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCC                       >  SRR4302540.6529830/1‑94 (MQ=60)
                                                                            CCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCAC                   >  SRR4302540.2853143/1‑94 (MQ=60)
                                                                            CCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCAC                   >  SRR4302540.3186819/1‑94 (MQ=60)
                                                                             CAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACC                  >  SRR4302540.9761241/1‑94 (MQ=60)
                                                                              AGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCG                 <  SRR4302540.5933144/94‑1 (MQ=60)
                                                                              AGCGGTTTGGTGACCCAATCGTCTGCACCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCG                 <  SRR4302540.3868014/94‑1 (MQ=60)
                                                                                CGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTT               >  SRR4302540.8863237/1‑94 (MQ=60)
                                                                                 GGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTG              >  SRR4302540.6535078/1‑94 (MQ=60)
                                                                                  GTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGA             <  SRR4302540.1437593/94‑1 (MQ=60)
                                                                                  GTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGA             <  SRR4302540.6744054/94‑1 (MQ=60)
                                                                                   TTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAG            >  SRR4302540.3865387/1‑94 (MQ=60)
                                                                                    TTGGTGGCGCAATCGTCTGCGCCCATTACCAGCCCAACAATACGGTCAAGCCGATCGCTGCGTCCGGTAGCCAGAATAATCCCCACCGTTGAGC           <  SRR4302540.8999369/94‑1 (MQ=60)
                                                                                     TGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCG          <  SRR4302540.1180184/94‑1 (MQ=60)
                                                                                     TGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCG          >  SRR4302540.4225375/1‑94 (MQ=60)
                                                                                     TGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCG          >  SRR4302540.6937188/1‑94 (MQ=60)
                                                                                      GGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGT         >  SRR4302540.9187197/1‑94 (MQ=60)
                                                                                       GTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTT        <  SRR4302540.9745326/94‑1 (MQ=60)
                                                                                       GTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTT        >  SRR4302540.9876027/1‑94 (MQ=60)
                                                                                         GACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCT      >  SRR4302540.9407638/1‑94 (MQ=60)
                                                                                          ACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCTC     <  SRR4302540.4264279/94‑1 (MQ=60)
                                                                                          ACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCTC     <  SRR4302540.7471233/94‑1 (MQ=60)
                                                                                           CGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCTCG    >  SRR4302540.3322169/1‑94 (MQ=60)
                                                                                           CGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCTCG    >  SRR4302540.8450881/1‑94 (MQ=60)
                                                                                             CAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCTCGCA  >  SRR4302540.663947/1‑94 (MQ=60)
                                                                                             |                                                                                             
GTGTGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGTAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCTCGCA  >  NC_000913/1056789‑1056975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑