Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,059,505 |
T→C |
W343R (TGG→CGG) |
torA → |
trimethylamine N‑oxide reductase subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,059,505 | 0 | T | C | 100.0%
| 816.9
/ NA
| 253 | W343R (TGG→CGG) | torA | trimethylamine N‑oxide reductase subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (114/139); total (114/139) |
Only 100 of 261 total aligned reads displayed.
AAAAACTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCATGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC > NC_000913/1059415‑1059594
|
aaCTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCt > 2:2387599/1‑93 (MQ=255)
aCTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTg > 2:8658083/1‑93 (MQ=255)
aCTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTg > 1:9380081/1‑93 (MQ=255)
tCCTTGCTAACTACTGTGTGGTTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGaaa < 2:1913358/93‑1 (MQ=255)
tCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGaaa < 1:5282030/93‑1 (MQ=255)
tCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGaaa > 2:4294934/1‑93 (MQ=255)
tCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGaaa > 2:7053204/1‑93 (MQ=255)
ccTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGaaaa > 1:8625058/1‑93 (MQ=255)
ttGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAAc > 2:7258487/1‑93 (MQ=255)
tGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGGCGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACt > 1:3636255/1‑93 (MQ=255)
tGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACt < 1:1645838/93‑1 (MQ=255)
gCTAACTACTGTGTGGTTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTg < 1:7620701/93‑1 (MQ=255)
cTAACTATTGGGTGGTTTTTGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGa < 2:2109057/93‑1 (MQ=255)
tAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAc > 1:9289694/1‑93 (MQ=255)
tAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAc < 1:8157886/93‑1 (MQ=255)
tAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAc < 1:7217084/93‑1 (MQ=255)
aaCTACTGTGTGGTTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAcc < 2:3258891/93‑1 (MQ=255)
aaCTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAcc < 1:9733740/93‑1 (MQ=255)
aaCTACTGTGTGGGTTTTGAGCAGTACCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAcg > 2:8555382/1‑92 (MQ=255)
actactGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCg > 1:9086311/1‑93 (MQ=255)
actactGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCg < 1:9972448/93‑1 (MQ=255)
actacgTTGTGGTTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCg < 2:6908515/93‑1 (MQ=255)
ctactGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCgg > 1:1048793/1‑93 (MQ=255)
ctGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAt > 2:6750742/1‑93 (MQ=255)
ctGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAt < 1:299421/93‑1 (MQ=255)
ctGTGTGGGTTTGGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAt < 2:6445492/93‑1 (MQ=255)
tgtgtgGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAtt > 1:5491942/1‑93 (MQ=255)
ggtgggGGTTTTGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAtt < 2:799121/92‑1 (MQ=255)
gtgtgGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTg > 1:10013198/1‑93 (MQ=255)
tgtgGGTTTTGAACAGATCCTGCCGTATCTGCTGGGTGAGAAAAACGATCAGCCGAAAGATGCCGCACGGGCTGACAAACTGACCGGCGTTGa < 2:8989034/93‑1 (MQ=255)
gtgGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGAt < 1:257276/93‑1 (MQ=255)
gtgGGTTTTGACCGGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGAt < 1:7263627/93‑1 (MQ=255)
ttGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGaaa > 1:7129231/1‑93 (MQ=255)
gAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAAcc < 2:8203853/93‑1 (MQ=255)
aGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGGCGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCa < 2:7517141/93‑1 (MQ=255)
aGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCa < 1:9323730/93‑1 (MQ=255)
aGCAGTCCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCa < 2:4679526/93‑1 (MQ=255)
aGCAGTCCCTGCCGTATCTGCTGCGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCa < 2:5509026/93‑1 (MQ=255)
gCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAt > 2:3151992/1‑93 (MQ=255)
gTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCg < 1:1756497/93‑1 (MQ=255)
ttCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCCTTCGt > 1:3299317/1‑93 (MQ=255)
ttCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGt > 2:3982703/1‑93 (MQ=255)
ttCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGt > 2:8458196/1‑93 (MQ=255)
tCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTg < 2:951039/93‑1 (MQ=255)
gccTGCCGTATCTGCGGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGTCATTGATGCCGAAACCATTCGTg < 1:891495/92‑1 (MQ=255)
ccTACCGTATCTGATGGGTGAGACAGACAGTCAGCCGAAAGCTGCCGCACGGGCTGAAAAACTGACCGGCATTAATGCCGAAACCATTCGTgg < 1:8991949/93‑1 (MQ=255)
tGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGc > 2:2915268/1‑93 (MQ=255)
tGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGc < 1:91392/93‑1 (MQ=255)
gCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGCTGCCGAAACCATTCGTGCGCt > 1:879950/1‑93 (MQ=255)
gCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCt < 2:449156/93‑1 (MQ=255)
ccGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTg < 1:2845138/93‑1 (MQ=255)
tATCTGCTGGGTGAGAAAGCCGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGATgtac > 2:1156372/1‑90 (MQ=255)
tATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgcg > 2:1012961/1‑93 (MQ=255)
tATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgcg > 1:4601178/1‑93 (MQ=255)
tATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgcc > 1:2056334/1‑92 (MQ=255)
aTCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgcgc < 1:6372425/93‑1 (MQ=255)
aTCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgcgc < 1:1367863/93‑1 (MQ=255)
tgctgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGc > 1:5172392/1‑93 (MQ=255)
tgGGTGAGAAAGACGGTCAGCGGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGa < 1:9432402/93‑1 (MQ=255)
tgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGa < 2:5781307/93‑1 (MQ=255)
tgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGa > 2:3068375/1‑93 (MQ=255)
tgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGa < 1:5579273/93‑1 (MQ=255)
gggTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGAt < 1:1194246/93‑1 (MQ=255)
gggTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGAt < 2:9267230/93‑1 (MQ=255)
ggTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATg < 2:2147576/93‑1 (MQ=255)
ggTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATg < 2:4433931/93‑1 (MQ=255)
gTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATgg < 2:536330/93‑1 (MQ=255)
gTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATgg < 1:1510096/93‑1 (MQ=255)
tGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggc > 2:168093/1‑93 (MQ=255)
tGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggc < 1:4218993/93‑1 (MQ=255)
tGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggc < 1:3796957/93‑1 (MQ=255)
gagaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggcg < 2:6240203/93‑1 (MQ=255)
agaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggcgg < 2:3420379/93‑1 (MQ=255)
gaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATgggggc > 1:2904644/1‑93 (MQ=255)
aaaGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGgcggcg < 1:3087272/93‑1 (MQ=255)
aaGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGa < 2:7439701/93‑1 (MQ=255)
aaGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGa > 2:7778581/1‑93 (MQ=255)
aGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGaa < 2:4582368/93‑1 (MQ=255)
ggTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCTAACAGa > 2:4614433/1‑93 (MQ=255)
gTCAGCCGATAGATGCCGCACGGGCTGAAAAACTGATCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGaa < 1:7687077/93‑1 (MQ=255)
gTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGaa < 2:7106535/93‑1 (MQ=255)
gTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGAGGCGAACAGaa > 2:3875465/1‑93 (MQ=255)
tCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAAc < 2:5041232/93‑1 (MQ=255)
aGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGc < 1:445270/93‑1 (MQ=255)
cGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCaaa > 2:9853911/1‑93 (MQ=255)
gAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAat > 2:9464301/1‑93 (MQ=255)
aaaGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAatt < 2:2044572/93‑1 (MQ=255)
aaGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAatta < 2:1414896/93‑1 (MQ=255)
aaGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAatta < 1:7764374/93‑1 (MQ=255)
aGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAattat < 2:5966655/93‑1 (MQ=255)
gATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAattatt < 1:3475471/93‑1 (MQ=255)
gATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAattatt < 1:5714564/93‑1 (MQ=255)
aTGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTg < 1:7075970/93‑1 (MQ=255)
tGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgc > 2:5474838/1‑93 (MQ=255)
gCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgct < 1:4007829/93‑1 (MQ=255)
gcGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctg < 1:8502958/92‑1 (MQ=255)
ccGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctg < 1:7447296/93‑1 (MQ=255)
ccGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctg < 2:2474113/93‑1 (MQ=255)
gCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctggc > 1:1905608/1‑93 (MQ=255)
gCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctggc > 2:3550790/1‑93 (MQ=255)
|
AAAAACTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCATGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC > NC_000913/1059415‑1059594
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACAAAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCATGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTGGT > NC_000913/1059412‑1059598
|
GACAAAAA‑CTTCCTTGCTAATTGCTGTGTGGT‑TTTGGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCAC < SRR4302540.8338680/94‑1 (MQ=60)
GACAAAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCAC < SRR4302540.3659438/94‑1 (MQ=60)
GACAAAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCAC < SRR4302540.8338682/94‑1 (MQ=60)
CAAACA‑CTTCCTTGCTACCTACTGTGGGGG‑TTTTGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGG < SRR4302540.5576045/94‑1 (MQ=60)
CAAAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGG > SRR4302540.742919/1‑94 (MQ=60)
AAAAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGG < SRR4302540.9197217/94‑1 (MQ=60)
AAAAACCTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGG < SRR4302540.5576046/94‑1 (MQ=60)
AAAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGG > SRR4302540.6847626/1‑94 (MQ=60)
AAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGC > SRR4302540.3353744/1‑94 (MQ=60)
AAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGC > SRR4302540.1995365/1‑94 (MQ=60)
AAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGC > SRR4302540.1594302/1‑94 (MQ=60)
AAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCT > SRR4302540.5612141/1‑94 (MQ=60)
AAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCT > SRR4302540.5612142/1‑94 (MQ=60)
AAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCT > SRR4302540.1841981/1‑94 (MQ=60)
AA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTG > SRR4302540.9491738/1‑94 (MQ=60)
TTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAA > SRR4302540.9425510/1‑94 (MQ=60)
TCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAA < SRR4302540.5339738/94‑1 (MQ=60)
TCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAA > SRR4302540.7522601/1‑94 (MQ=60)
TCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAA > SRR4302540.8725250/1‑94 (MQ=60)
CCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAA > SRR4302540.6395174/1‑94 (MQ=60)
TTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGGCGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACT > SRR4302540.3676061/1‑94 (MQ=60)
TTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACT < SRR4302540.1580992/94‑1 (MQ=60)
TGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTG < SRR4302540.1663804/94‑1 (MQ=60)
GCTAACTACTGTGTGGT‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGA < SRR4302540.7706393/94‑1 (MQ=60)
GCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGA > SRR4302540.5676214/1‑94 (MQ=60)
CTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAC > SRR4302540.9400714/1‑94 (MQ=60)
TATCTACGGTGTGGT‑TTTGGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACC < SRR4302540.7297557/94‑1 (MQ=60)
TAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACC > SRR4302540.4915106/1‑94 (MQ=60)
TAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACC < SRR4302540.2352748/94‑1 (MQ=60)
TAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACC < SRR4302540.8252598/94‑1 (MQ=60)
TAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACC < SRR4302540.7297525/94‑1 (MQ=60)
AACTTCTGTGTGGT‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCG < SRR4302540.9848033/94‑1 (MQ=60)
AACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGTACGGGCTGCAAAACTAACCG > SRR4302540.5175482/1‑94 (MQ=60)
AACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCG < SRR4302540.9848035/94‑1 (MQ=60)
AACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCG > SRR4302540.9195470/1‑94 (MQ=60)
acatacggggtggtTTTTGAGCATTCCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCG < SRR4302540.9848034/80‑1 (MQ=60)
ACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGG < SRR4302540.10088765/94‑1 (MQ=60)
ACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGG > SRR4302540.1059457/1‑94 (MQ=60)
TCTGTGTGGG‑TTTTGAGCGGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAT < SRR4302540.8661868/94‑1 (MQ=60)
CCTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAGAACTGACCGGCAT < SRR4302540.3595816/94‑1 (MQ=60)
ACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAT > SRR4302540.1388025/1‑94 (MQ=60)
CTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATT > SRR4302540.5552409/1‑94 (MQ=60)
CTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATT < SRR4302540.302381/94‑1 (MQ=60)
TGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTG > SRR4302540.10129778/1‑94 (MQ=60)
GTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATG < SRR4302540.259769/94‑1 (MQ=60)
GTGGG‑TTTTGACCGGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATG < SRR4302540.7344680/94‑1 (MQ=60)
TGGGTTTTTGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATG < SRR4302540.2142996/94‑1 (MQ=60)
TGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGC > SRR4302540.8511669/1‑94 (MQ=60)
TGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGC > SRR4302540.7943851/1‑94 (MQ=60)
GG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGTTGAAAAACTGACCGGCATTGATGCCG > SRR4302540.7792129/1‑94 (MQ=60)
GG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCG < SRR4302540.3379378/94‑1 (MQ=60)
GG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCG > SRR4302540.7792128/1‑94 (MQ=60)
G‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGA < SRR4302540.7275550/94‑1 (MQ=60)
TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAA > SRR4302540.7189364/1‑94 (MQ=60)
TTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAA > SRR4302540.7208644/1‑94 (MQ=60)
AGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAT < SRR4302540.9434957/94‑1 (MQ=60)
AGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAT < SRR4302540.9434954/94‑1 (MQ=60)
AGCAGTCCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAT < SRR4302540.8883116/94‑1 (MQ=60)
GCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGACGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATT > SRR4302540.1262645/1‑94 (MQ=60)
GAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTC < SRR4302540.6108417/94‑1 (MQ=60)
AGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCG > SRR4302540.3287105/1‑94 (MQ=60)
GTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCCTTCGT > SRR4302540.3335431/1‑94 (MQ=60)
GTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGT < SRR4302540.1775529/94‑1 (MQ=60)
GTCCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGT < SRR4302540.7666777/94‑1 (MQ=60)
TTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTG < SRR4302540.1919909/94‑1 (MQ=60)
TTCCTGCCGTATCTGCGGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTG < SRR4302540.2310911/94‑1 (MQ=60)
TCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGG < SRR4302540.9018215/94‑1 (MQ=60)
TCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGG < SRR4302540.9018214/94‑1 (MQ=60)
GCCTGCCGTATCTGCGGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGTCATTGATGCCGAAACCATTCGTGG < SRR4302540.900969/94‑1 (MQ=60)
CCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCGTTGATGCCGAAACCATTCGTGGG > SRR4302540.6677996/1‑94 (MQ=60)
CCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCAGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGG < SRR4302540.9236447/94‑1 (MQ=60)
CCTACCGTATCTGATGGGTGAGACAGACAGTCAGCCGAAAGCTGCCGCACGGGCTGAAAAACTGACCGGCATTAATGCCGAAACCATTCGTGGG < SRR4302540.9099707/94‑1 (MQ=60)
TGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGCTGCCGAAACCATTCGTGCGCT > SRR4302540.889285/1‑94 (MQ=60)
TGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCT < SRR4302540.92357/94‑1 (MQ=60)
CCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGG < SRR4302540.2875929/94‑1 (MQ=60)
CCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGG < SRR4302540.2875930/94‑1 (MQ=60)
CGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGC < SRR4302540.7554888/94‑1 (MQ=60)
CGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGC > SRR4302540.9137797/1‑94 (MQ=60)
CGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGC > SRR4302540.1200896/1‑94 (MQ=60)
GTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCG > SRR4302540.4650626/1‑94 (MQ=60)
GTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCG > SRR4302540.9450123/1‑94 (MQ=60)
GTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCG > SRR4302540.4650625/1‑94 (MQ=60)
GTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCC > SRR4302540.2078468/1‑94 (MQ=60)
TATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGC > SRR4302540.5435150/1‑94 (MQ=60)
ATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCG < SRR4302540.1382347/94‑1 (MQ=60)
ATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCG < SRR4302540.6443377/94‑1 (MQ=60)
ATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCG < SRR4302540.3249225/94‑1 (MQ=60)
TCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGG > SRR4302540.9968218/1‑94 (MQ=60)
CTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCNGCACGGGCTGAAAAACTGACCGGCATTGATGCNNANNNNANTCGTGGGnngnnngnnc > SRR4302540.472233/1‑84 (MQ=60)
CTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGC > SRR4302540.5228684/1‑94 (MQ=60)
TGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCA > SRR4302540.10149874/1‑94 (MQ=60)
TGGGTGAGAAAGACGGTCAGCGGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGAT < SRR4302540.9544438/94‑1 (MQ=60)
TGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGAT < SRR4302540.3722040/94‑1 (MQ=60)
TGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGAT < SRR4302540.5640684/94‑1 (MQ=60)
TGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGAT < SRR4302540.8381185/94‑1 (MQ=60)
GGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATG < SRR4302540.1206549/94‑1 (MQ=60)
GTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGC > SRR4302540.8965689/1‑94 (MQ=60)
GTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGC > SRR4302540.8965688/1‑94 (MQ=60)
GTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGC < SRR4302540.3997840/94‑1 (MQ=60)
GTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGC < SRR4302540.1526780/94‑1 (MQ=60)
TGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCG < SRR4302540.3838335/94‑1 (MQ=60)
TGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCG < SRR4302540.4264923/94‑1 (MQ=60)
AGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGGGGC > SRR4302540.2936351/1‑94 (MQ=60)
GAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCG < SRR4302540.1396883/94‑1 (MQ=60)
AAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGA < SRR4302540.3121146/94‑1 (MQ=60)
AGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAAC > SRR4302540.9235420/1‑94 (MQ=60)
AGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAAA > SRR4302540.9307503/1‑94 (MQ=60)
GACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACA < SRR4302540.5322021/94‑1 (MQ=60)
GGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAA < SRR4302540.4423421/94‑1 (MQ=60)
GTCAGCCGATAGATGCCGCACGGGCTGAAAAACTGATCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAAC < SRR4302540.7774313/94‑1 (MQ=60)
TCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAACCCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACG < SRR4302540.4552055/94‑1 (MQ=60)
TCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACG > SRR4302540.9526733/1‑94 (MQ=60)
CAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGC < SRR4302540.7721557/94‑1 (MQ=60)
AGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCA < SRR4302540.450011/94‑1 (MQ=60)
GCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAA > SRR4302540.4485508/1‑94 (MQ=60)
CCGAAAGATGCCGCACGGGCTGAAAAACTGACTGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAA < SRR4302540.8609984/94‑1 (MQ=60)
CGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAAT > SRR4302540.3003374/1‑94 (MQ=60)
GAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATT > SRR4302540.9421998/1‑94 (MQ=60)
GAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATT > SRR4302540.5334744/1‑94 (MQ=60)
AAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTAT < SRR4302540.7855140/94‑1 (MQ=60)
AGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATT > SRR4302540.10099105/1‑94 (MQ=60)
GATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTG < SRR4302540.7286830/94‑1 (MQ=60)
GATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTG < SRR4302540.5777466/94‑1 (MQ=60)
GATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTG < SRR4302540.3513314/94‑1 (MQ=60)
ATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACTATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGC < SRR4302540.9682363/94‑1 (MQ=60)
ATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGC < SRR4302540.3817768/94‑1 (MQ=60)
ATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGC < SRR4302540.7154708/94‑1 (MQ=60)
ATGCCGCACGGGCTGAAAAAATGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGCTGGCGAAAAGAACGCAAATTATTGT > SRR4302540.8239109/1‑94 (MQ=60)
GCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTG < SRR4302540.2971250/94‑1 (MQ=60)
GCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTG < SRR4302540.4050978/94‑1 (MQ=60)
GCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGG < SRR4302540.8601767/94‑1 (MQ=60)
CCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGG < SRR4302540.3037244/94‑1 (MQ=60)
CCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGG > SRR4302540.2710800/1‑94 (MQ=60)
CCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGG < SRR4302540.7530281/94‑1 (MQ=60)
CGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGTGGCGAACAGAACGCAAATTATTGCTGGC > SRR4302540.4190513/1‑94 (MQ=60)
CGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC < SRR4302540.2901569/94‑1 (MQ=60)
CGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC > SRR4302540.4190512/1‑94 (MQ=60)
CGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC > SRR4302540.1926438/1‑94 (MQ=60)
CGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC < SRR4302540.1664587/94‑1 (MQ=60)
GCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCT < SRR4302540.1158106/94‑1 (MQ=60)
GCAAGGGCTGAAAAACTGACCCGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCAGCGAACAGAACCCAAATTATTGCTGGCT > SRR4302540.6495895/1‑94 (MQ=60)
CACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTG > SRR4302540.8742477/1‑94 (MQ=60)
CACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTG < SRR4302540.5777872/94‑1 (MQ=60)
CACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTG > SRR4302540.9127599/1‑94 (MQ=60)
ACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTGG < SRR4302540.430114/94‑1 (MQ=60)
ACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTGG < SRR4302540.430115/94‑1 (MQ=60)
CGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTGGT < SRR4302540.4217502/94‑1 (MQ=60)
|
GACAAAAA‑CTTCCTTGCTAACTACTGTGTGGG‑TTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCATGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTGGT > NC_000913/1059412‑1059598
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
