Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,059,505 |
T→C |
W343R (TGG→CGG) |
torA → |
trimethylamine N‑oxide reductase subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,059,505 | 0 | T | C | 99.6%
| 769.2
/ ‑4.1
| 240 | W343R (TGG→CGG) | torA | trimethylamine N‑oxide reductase subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (122/117); minor base G (0/1); total (122/118) |
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.05e-01 |
Only 100 of 245 total aligned reads displayed.
AAAAACTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCATGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC > NC_000913/1059415‑1059594
|
aaaaCTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACggg > 1:3250643/1‑93 (MQ=255)
aaaaCTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACggg > 1:4622113/1‑93 (MQ=255)
aaaaCTTCCTTGCTAACTACTGTGTGGGTTTGGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACggg < 1:4166199/93‑1 (MQ=255)
aaccTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGc < 2:5995174/90‑1 (MQ=255)
aaccTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGc < 1:4973500/90‑1 (MQ=255)
aaaCTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGc < 1:3881702/93‑1 (MQ=255)
accttcttTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCt < 1:1813936/91‑1 (MQ=255)
cTTCCTTGCTAAGTCCTGTGTGGGTTTTGAGTATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGa < 2:4307169/93‑1 (MQ=255)
cTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTCCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGa < 1:3774188/93‑1 (MQ=255)
ttCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGaa > 2:4077970/1‑93 (MQ=255)
ttCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGaa > 1:81069/1‑93 (MQ=255)
tCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGaaa > 2:556442/1‑93 (MQ=255)
ttGCTAACTCGTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAAc < 2:2644923/93‑1 (MQ=255)
ttGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAAc < 1:6035837/93‑1 (MQ=255)
gCTAATTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTg < 2:4846611/93‑1 (MQ=255)
cTAACTCCTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGa < 2:5369963/93‑1 (MQ=255)
cTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGa > 1:5870560/1‑93 (MQ=255)
cTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGa > 1:2261772/1‑93 (MQ=255)
tAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAc > 2:4685355/1‑93 (MQ=255)
tAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAc > 1:102193/1‑93 (MQ=255)
acctactGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAcc < 1:1853121/91‑1 (MQ=255)
aaCTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAcc > 1:6188696/1‑93 (MQ=255)
actactGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCg > 2:1084881/1‑93 (MQ=255)
actactGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCg > 1:112442/1‑93 (MQ=255)
actGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCa > 2:5508684/1‑93 (MQ=255)
ctGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAt > 2:4387462/1‑93 (MQ=255)
ctGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAt > 2:3754305/1‑93 (MQ=255)
tgtgggGGTTTTGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAtt < 2:301380/93‑1 (MQ=255)
gtgtgGGTTTTGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTg < 1:3330143/93‑1 (MQ=255)
gtgtgGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTg > 2:6090859/1‑93 (MQ=255)
tgtgGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGa > 2:4177440/1‑93 (MQ=255)
tgtgGGTTTTGAGCAGTCCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGa < 2:734683/93‑1 (MQ=255)
tgGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATg > 1:2028679/1‑93 (MQ=255)
gggTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGc > 2:1252199/1‑93 (MQ=255)
ggTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGcc > 1:4403541/1‑93 (MQ=255)
tttGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGaa > 2:3062963/1‑93 (MQ=255)
gCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAt > 1:663441/1‑93 (MQ=255)
gCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAt > 1:3388197/1‑93 (MQ=255)
ccAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATCCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAt < 2:1439068/92‑1 (MQ=255)
cgtttCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAtt < 2:5465653/90‑1 (MQ=255)
gTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCg > 2:3756783/1‑93 (MQ=255)
gTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCg > 1:1350604/1‑93 (MQ=255)
ttCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGt < 1:2133180/93‑1 (MQ=255)
tcccTGCCGTATCTGCTGGGAGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGCCCGGCATTGATGCCGAAACCATTCGt < 2:3485402/91‑1 (MQ=255)
tCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCAGGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTg < 1:4436115/93‑1 (MQ=255)
tCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTg < 1:3688587/93‑1 (MQ=255)
ccTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTgg > 1:1150173/1‑93 (MQ=255)
tGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGc > 1:5076609/1‑93 (MQ=255)
gCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCt < 2:2282466/93‑1 (MQ=255)
gCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCt < 2:1162024/93‑1 (MQ=255)
cGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTgg > 1:5674173/1‑93 (MQ=255)
cGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTgg < 2:2457946/93‑1 (MQ=255)
cGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTgg > 2:3425680/1‑93 (MQ=255)
gTATCTGCTGGGTGAGAAAGACTGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgc < 1:1708080/93‑1 (MQ=255)
cgaTCTGCCTGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgc < 2:2112799/91‑1 (MQ=255)
tATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgcg < 2:6274083/93‑1 (MQ=255)
aTCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGgcgc > 1:2759410/1‑93 (MQ=255)
tCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGcgcg < 2:583754/93‑1 (MQ=255)
ctgctgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCgg < 1:3080324/93‑1 (MQ=255)
tgctgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGc < 1:1030990/93‑1 (MQ=255)
tgctgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGc > 1:4947618/1‑93 (MQ=255)
tgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGa < 2:1824591/93‑1 (MQ=255)
tgGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGa > 2:807286/1‑93 (MQ=255)
ggTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAGACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATg < 1:2200391/93‑1 (MQ=255)
ggTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATg > 2:2771455/1‑93 (MQ=255)
gTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGAGGGCTGGCGCGGCAGATgg < 2:6142804/93‑1 (MQ=255)
ggagaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggc < 1:1563177/92‑1 (MQ=255)
gagaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggcg < 2:3201853/93‑1 (MQ=255)
agaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggcgg > 2:4982184/1‑93 (MQ=255)
agaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggcgg < 2:200332/93‑1 (MQ=255)
agaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCATGGGCTGGCGCGGCAGATggcgg > 2:3912317/1‑93 (MQ=255)
gaAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATggcggc < 1:2941606/93‑1 (MQ=255)
aaGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGa > 1:5960032/1‑93 (MQ=255)
ggTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGATACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGa < 1:4550621/93‑1 (MQ=255)
ggTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGa < 1:5715575/93‑1 (MQ=255)
gCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACCGAAAGCa > 2:4458786/1‑93 (MQ=255)
gCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCa > 2:853067/1‑93 (MQ=255)
cGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCaaa > 1:1330046/1‑93 (MQ=255)
cGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCaaa > 2:3968949/1‑93 (MQ=255)
gAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTTGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAat > 1:4311110/1‑93 (MQ=255)
gAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAat > 2:2943905/1‑93 (MQ=255)
gAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAat > 2:4619235/1‑93 (MQ=255)
aaaGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAatt > 1:863389/1‑93 (MQ=255)
aaaGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAatt > 2:1642108/1‑93 (MQ=255)
aGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAattat > 1:5437461/1‑93 (MQ=255)
gATGCCGCGCGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAattatt < 2:1001568/93‑1 (MQ=255)
gATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAattatt > 2:5173006/1‑93 (MQ=255)
gATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAattatt < 2:1467045/93‑1 (MQ=255)
gATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAattatt < 2:1880161/93‑1 (MQ=255)
aTGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGTGACCATAACGCAAATTATTg > 2:2384962/1‑93 (MQ=255)
aTGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTg < 1:2464974/93‑1 (MQ=255)
tGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgc < 1:357547/93‑1 (MQ=255)
gCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgct < 2:2336917/93‑1 (MQ=255)
gCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgct < 1:5122190/93‑1 (MQ=255)
gCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgct < 1:4077970/93‑1 (MQ=255)
ccGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctg < 1:5457833/93‑1 (MQ=255)
ccGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctg < 1:1751262/93‑1 (MQ=255)
cGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctgg > 1:950023/1‑93 (MQ=255)
gCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctggc < 2:2642753/93‑1 (MQ=255)
gCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTgctggc > 1:1092981/1‑93 (MQ=255)
|
AAAAACTTCCTTGCTAACTACTGTGTGGGTTTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCATGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC > NC_000913/1059415‑1059594
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAAAAA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCATGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTGGT > NC_000913/1059414‑1059598
|
CAAAAA‑CTTCTTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGG < SRR4302533.3253666/94‑1 (MQ=60)
CAAAAA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGG > SRR4302533.195451/1‑94 (MQ=60)
CAAAAA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGG > SRR4302533.5899024/1‑94 (MQ=60)
AAAAACCTTCCTTGCTACCTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGG < SRR4302533.3459099/94‑1 (MQ=60)
AAAAA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGG > SRR4302533.3270687/1‑94 (MQ=60)
AAAAA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGG > SRR4302533.4650125/1‑94 (MQ=60)
AAAA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TGGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGC < SRR4302533.4191443/94‑1 (MQ=60)
ATA‑CTCCCTTGCTAACTACTGTGGGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCT < SRR4302533.1160787/94‑1 (MQ=60)
AAC‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCT < SRR4302533.5003656/94‑1 (MQ=60)
AAA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCT < SRR4302533.3905391/94‑1 (MQ=60)
AC‑CTTCTTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTG < SRR4302533.1825011/94‑1 (MQ=60)
AA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTG > SRR4302533.3665748/1‑94 (MQ=60)
CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGTAAGACGGTCAGCCGAAAGATCCCGCACGGGCTGAA > SRR4302533.4182657/1‑94 (MQ=60)
CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAA > SRR4302533.81584/1‑94 (MQ=60)
CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTCCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAA < SRR4302533.3797324/94‑1 (MQ=60)
TCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAA > SRR4302533.1539824/1‑94 (MQ=60)
TCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAA > SRR4302533.2197183/1‑94 (MQ=60)
TCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAA < SRR4302533.4986981/94‑1 (MQ=60)
CCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAA > SRR4302533.2165487/1‑94 (MQ=60)
CTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAAC > SRR4302533.3272470/1‑94 (MQ=60)
CTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAAC > SRR4302533.5327411/1‑94 (MQ=60)
CTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAAC < SRR4302533.4095625/94‑1 (MQ=60)
TTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACT < SRR4302533.6072414/94‑1 (MQ=60)
TGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTG < SRR4302533.3188201/94‑1 (MQ=60)
TGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTG > SRR4302533.738661/1‑94 (MQ=60)
GCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGA > SRR4302533.5906043/1‑94 (MQ=60)
GCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGA > SRR4302533.2275758/1‑94 (MQ=60)
CTAATTTCTGTGGGGGTT‑ATGAACATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAC < SRR4302533.1150484/94‑1 (MQ=60)
CTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAC > SRR4302533.102829/1‑94 (MQ=60)
CTAACTACTGTGTGGGTT‑TTGAGCAGTCCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGAC < SRR4302533.4867357/94‑1 (MQ=60)
TACCTGCTGTGTGGTTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACC < SRR4302533.1966219/94‑1 (MQ=60)
TAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACC > SRR4302533.6225837/1‑94 (MQ=60)
ACCTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCG < SRR4302533.1864419/94‑1 (MQ=60)
AACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCG > SRR4302533.113150/1‑94 (MQ=60)
ACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGG > SRR4302533.3978511/1‑94 (MQ=60)
ACTGTGTGGTTT‑TGGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAT < SRR4302533.910556/94‑1 (MQ=60)
ACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCAT > SRR4302533.452808/1‑94 (MQ=60)
TGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTG > SRR4302533.866115/1‑94 (MQ=60)
GTGTGGGTT‑TTGAGCATTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGA < SRR4302533.3350726/94‑1 (MQ=60)
GTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGA > SRR4302533.5088747/1‑94 (MQ=60)
TGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGAT > SRR4302533.2440271/1‑94 (MQ=60)
GTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATG < SRR4302533.241278/94‑1 (MQ=60)
GTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATG > SRR4302533.3795325/1‑94 (MQ=60)
GTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATG > SRR4302533.2041201/1‑94 (MQ=60)
GGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCC > SRR4302533.4430129/1‑94 (MQ=60)
GGTTGTTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCC < SRR4302533.5221483/94‑1 (MQ=60)
GGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCG > SRR4302533.2612282/1‑94 (MQ=60)
TGGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAAC < SRR4302533.1324583/94‑1 (MQ=60)
AGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAT > SRR4302533.667358/1‑94 (MQ=60)
AGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAT > SRR4302533.3409118/1‑94 (MQ=60)
AGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCAT < SRR4302533.155950/94‑1 (MQ=60)
CAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGCAAAACTCACCGGCATTGATGCCGACACCATTC > SRR4302533.1343913/1‑94 (MQ=60)
AGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAACACTGACCGGCATTGATGCCGAAACCATTCG > SRR4302533.5482122/1‑94 (MQ=60)
AGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCG > SRR4302533.4729919/1‑94 (MQ=60)
AGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCG < SRR4302533.4398528/94‑1 (MQ=60)
AGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCG > SRR4302533.1358726/1‑94 (MQ=60)
AGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCG > SRR4302533.2030951/1‑94 (MQ=60)
AGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCG < SRR4302533.5042117/94‑1 (MQ=60)
TTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTG < SRR4302533.2146336/94‑1 (MQ=60)
TCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCAGGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGG < SRR4302533.4462932/94‑1 (MQ=60)
TCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGG > SRR4302533.1157041/1‑94 (MQ=60)
TCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGG < SRR4302533.3711253/94‑1 (MQ=60)
CTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGC > SRR4302533.6309993/1‑94 (MQ=60)
CTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGC > SRR4302533.5107295/1‑94 (MQ=60)
TGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCT > SRR4302533.3225103/1‑94 (MQ=60)
GCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTG < SRR4302533.893868/94‑1 (MQ=60)
CCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGG > SRR4302533.5708439/1‑94 (MQ=60)
CGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGC > SRR4302533.5642274/1‑94 (MQ=60)
CGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGC > SRR4302533.4441894/1‑94 (MQ=60)
GTATCTGCTGGGTGAGAAAGACTGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCG < SRR4302533.1718430/94‑1 (MQ=60)
GTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCG > SRR4302533.984051/1‑94 (MQ=60)
GTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCG < SRR4302533.3002684/94‑1 (MQ=60)
TATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGC > SRR4302533.2776323/1‑94 (MQ=60)
TATCTGCTGGGTGAGAAAGACGGCCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGC > SRR4302533.4280385/1‑94 (MQ=60)
ATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCG > SRR4302533.455374/1‑94 (MQ=60)
ATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCG < SRR4302533.1029561/94‑1 (MQ=60)
ATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCG < SRR4302533.4629705/94‑1 (MQ=60)
ATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCG > SRR4302533.1864025/1‑94 (MQ=60)
ATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCG < SRR4302533.2808649/94‑1 (MQ=60)
CTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGC > SRR4302533.4977573/1‑94 (MQ=60)
CTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGC < SRR4302533.3099222/94‑1 (MQ=60)
TGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCA < SRR4302533.1037053/94‑1 (MQ=60)
TGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCA < SRR4302533.1103152/94‑1 (MQ=60)
CTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGA > SRR4302533.5318802/1‑94 (MQ=60)
ggggaGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGAT < SRR4302533.3807090/89‑1 (MQ=60)
TGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGAT > SRR4302533.2218154/1‑94 (MQ=60)
GGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATG < SRR4302533.1112558/94‑1 (MQ=60)
GGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAGACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGG < SRR4302533.2213946/94‑1 (MQ=60)
GGTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGG < SRR4302533.563032/94‑1 (MQ=60)
GTGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGC < SRR4302533.6086768/94‑1 (MQ=60)
TGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCG < SRR4302533.2874742/94‑1 (MQ=60)
GGAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCG < SRR4302533.1572588/94‑1 (MQ=60)
GAGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGG < SRR4302533.3382214/94‑1 (MQ=60)
AGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGC < SRR4302533.1733712/94‑1 (MQ=60)
AGAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGC > SRR4302533.106089/1‑94 (MQ=60)
GAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCG < SRR4302533.1585468/94‑1 (MQ=60)
GAAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCG < SRR4302533.2959571/94‑1 (MQ=60)
AAAGACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGA > SRR4302533.5996086/1‑94 (MQ=60)
GACGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACA > SRR4302533.378814/1‑94 (MQ=60)
CGGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGA > SRR4302533.2074362/1‑94 (MQ=60)
GGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGATACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAA < SRR4302533.4578218/94‑1 (MQ=60)
GGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAA > SRR4302533.5944099/1‑94 (MQ=60)
GGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAA < SRR4302533.5930037/94‑1 (MQ=60)
GGTCAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAA < SRR4302533.5750097/94‑1 (MQ=60)
GTCAGCCGAACGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAAC < SRR4302533.602344/94‑1 (MQ=60)
CAGCCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGC > SRR4302533.1739183/1‑94 (MQ=60)
CAGCCGAAAGATGCCGCACGCGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGC < SRR4302533.4230715/94‑1 (MQ=60)
CCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAA > SRR4302533.5125298/1‑94 (MQ=60)
CCGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAA > SRR4302533.1338027/1‑94 (MQ=60)
CGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTTGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAAT > SRR4302533.4337062/1‑94 (MQ=60)
CGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAAT < SRR4302533.737042/94‑1 (MQ=60)
CGAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAAT < SRR4302533.6173425/94‑1 (MQ=60)
GAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATT > SRR4302533.5721222/1‑94 (MQ=60)
GAAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATT > SRR4302533.868447/1‑94 (MQ=60)
AAAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTA > SRR4302533.3536123/1‑94 (MQ=60)
AAGATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTAT > SRR4302533.5470209/1‑94 (MQ=60)
GATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTG > SRR4302533.5455025/1‑94 (MQ=60)
ATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGC > SRR4302533.1810559/1‑94 (MQ=60)
ATGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGC < SRR4302533.2480179/94‑1 (MQ=60)
TGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCT < SRR4302533.3577477/94‑1 (MQ=60)
TGCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCT < SRR4302533.359724/94‑1 (MQ=60)
GCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTG < SRR4302533.5153136/94‑1 (MQ=60)
GCCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTG < SRR4302533.4102796/94‑1 (MQ=60)
CCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGG < SRR4302533.5490714/94‑1 (MQ=60)
CCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGG < SRR4302533.1761925/94‑1 (MQ=60)
CCGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGG > SRR4302533.955602/1‑94 (MQ=60)
CGCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGC > SRR4302533.1099447/1‑94 (MQ=60)
GCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCT > SRR4302533.1589222/1‑94 (MQ=60)
GCACGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCT < SRR4302533.6022700/94‑1 (MQ=60)
CACGGGCTGAAAAACTGACCGGCATTGATGCCGAACCCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTG < SRR4302533.5474508/94‑1 (MQ=60)
CACGGGCTGAAAAACTGAACGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTG > SRR4302533.555777/1‑94 (MQ=60)
CGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTGGT < SRR4302533.754443/94‑1 (MQ=60)
|
CAAAAA‑CTTCCTTGCTAACTACTGTGTGGGTT‑TTGAGCAGTTCCTGCCGTATCTGCTGGGTGAGAAAGACGGTCAGCCGAAAGATGCCGCATGGGCTGAAAAACTGACCGGCATTGATGCCGAAACCATTCGTGGGCTGGCGCGGCAGATGGCGGCGAACAGAACGCAAATTATTGCTGGCTGGT > NC_000913/1059414‑1059598
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
