Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,226,344	C→T	A118T (GCC→ACC)	ycgK ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,226,344	0	C	T	99.3%	1070.6 / NA	304	A118T (GCC→ACC)	ycgK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (153/148); minor base A (1/1); total (155/149)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 330 total aligned reads displayed.

ATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATC  >  NC_000913/1226254‑1226433

aTTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGgtgt                                                                                         >  1:8590756/1‑93 (MQ=255)

 ttAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGtgtc                                                                                        >  2:7587399/1‑93 (MQ=255)

 ttAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGtgtc                                                                                        >  2:962922/1‑93 (MQ=255)

 ttAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGtgtc                                                                                        >  1:3620195/1‑93 (MQ=255)

  tAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGtgtcg                                                                                       <  2:3116250/93‑1 (MQ=255)

  tAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGtgtcg                                                                                       >  2:3412646/1‑93 (MQ=255)

     cGTTTATGACGGGGAGATTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGGTTTGTTTTTACGGTtgtcgggt                                                                                    >  2:5642971/1‑90 (MQ=255)

       tttATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCg                                                                                  >  2:8127311/1‑93 (MQ=255)

       tttATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCg                                                                                  >  2:5071501/1‑93 (MQ=255)

        ttATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCgg                                                                                 <  1:178137/93‑1 (MQ=255)

           tGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGtt                                                                              <  1:2949943/93‑1 (MQ=255)

               ggggAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGGTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCa                                                                          >  1:8337579/1‑93 (MQ=255)

                gggAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCaa                                                                         >  1:2480820/1‑93 (MQ=255)

                 ggAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAac                                                                        <  1:9266513/93‑1 (MQ=255)

                 ggAGAGGCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAac                                                                        <  1:6929045/93‑1 (MQ=255)

                    gagTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACt                                                                     >  1:4222942/1‑93 (MQ=255)

                    gagTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACt                                                                     >  1:7577774/1‑93 (MQ=255)

                     agTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTc                                                                    <  1:5628847/93‑1 (MQ=255)

                      gTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCg                                                                   >  1:1647257/1‑93 (MQ=255)

                       tCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGc                                                                  >  2:5703379/1‑93 (MQ=255)

                           cGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCt                                                              >  1:1896934/1‑93 (MQ=255)

                           cGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCt                                                              <  1:4792265/93‑1 (MQ=255)

                            gTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTc                                                             >  1:1594189/1‑93 (MQ=255)

                            gTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTc                                                             >  1:8393619/1‑93 (MQ=255)

                               ggTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCata                                                          >  1:9383145/1‑93 (MQ=255)

                               ggTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCata                                                          <  1:5526908/93‑1 (MQ=255)

                               ggTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCata                                                          >  1:680955/1‑93 (MQ=255)

                                gTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCatat                                                         <  2:8611921/93‑1 (MQ=255)

                                gTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCatat                                                         >  2:7362651/1‑93 (MQ=255)

                                gTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCatat                                                         >  1:6981838/1‑93 (MQ=255)

                                 ttGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATAtt                                                        <  2:4378944/93‑1 (MQ=255)

                                 ttGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATAtt                                                        <  1:6304264/93‑1 (MQ=255)

                                  tGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATAttt                                                       >  2:1380071/1‑93 (MQ=255)

                                   gACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTg                                                      >  1:3658912/1‑93 (MQ=255)

                                   gACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTg                                                      >  1:7687959/1‑93 (MQ=255)

                                      aTTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCa                                                   <  2:60720/93‑1 (MQ=255)

                                      aTTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCa                                                   >  2:7852584/1‑93 (MQ=255)

                                      aTTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTGGCAACACTCGCAGCTCATATTTGCCa                                                   <  1:1512397/93‑1 (MQ=255)

                                      aTTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGAGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCa                                                   >  1:7935068/1‑93 (MQ=255)

                                       tttACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAg                                                  >  2:91009/1‑93 (MQ=255)

                                       tttACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAg                                                  >  2:3702114/1‑93 (MQ=255)

                                       tttACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAg                                                  >  1:4366689/1‑93 (MQ=255)

                                       tttACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAg                                                  >  1:3116326/1‑93 (MQ=255)

                                        ttACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGa                                                 >  1:10008023/1‑93 (MQ=255)

                                         tACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGaa                                                <  2:9415174/93‑1 (MQ=255)

                                            ttAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCa                                             <  2:3621922/93‑1 (MQ=255)

                                            ttAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCa                                             <  1:467114/93‑1 (MQ=255)

                                             tAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAg                                            >  2:5351198/1‑93 (MQ=255)

                                             tAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAg                                            <  2:2830468/93‑1 (MQ=255)

                                                tttGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGga                                         >  1:2318008/1‑93 (MQ=255)

                                                tttGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGga                                         >  1:6454/1‑93 (MQ=255)

                                                 ttGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgag                                        >  2:8230284/1‑93 (MQ=255)

                                                 ttGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgag                                        <  2:2035855/93‑1 (MQ=255)

                                                  tGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagg                                       >  2:3229558/1‑92 (MQ=255)

                                                   gAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagtg                                      <  1:8849832/93‑1 (MQ=255)

                                                    aaTATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagtga                                     <  2:7658518/93‑1 (MQ=255)

                                                    aaTATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagcga                                     >  2:1102358/1‑93 (MQ=255)

                                                     atatCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagtgag                                    <  2:7102700/93‑1 (MQ=255)

                                                     atatCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagtgag                                    <  2:6711565/93‑1 (MQ=255)

                                                      tatCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagtgagg                                   >  1:9567051/1‑92 (MQ=255)

                                                      tatCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagtgaga                                   >  1:4560528/1‑92 (MQ=255)

                                                      tatCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTATGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGgagtgaga                                   >  1:5354767/1‑92 (MQ=255)

                                                       atCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTa                                  >  2:9116618/1‑93 (MQ=255)

                                                       atCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTa                                  >  1:1265486/1‑93 (MQ=255)

                                                       atCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGCGAGTGAGTa                                  >  2:1915911/1‑93 (MQ=255)

                                                        tCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTAt                                 <  2:1820604/93‑1 (MQ=255)

                                                         cGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTAtt                                >  1:7161512/1‑93 (MQ=255)

                                                         cGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTAtt                                <  1:5269227/93‑1 (MQ=255)

                                                          gACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTg                               <  1:8242098/93‑1 (MQ=255)

                                                           aCGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGt                              >  1:7435365/1‑93 (MQ=255)

                                                            cGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTc                             >  1:8099983/1‑93 (MQ=255)

                                                            cGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTc                             <  1:3922708/93‑1 (MQ=255)

                                                             gTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTcc                            <  2:1713650/93‑1 (MQ=255)

                                                             gTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTcc                            <  1:989836/93‑1 (MQ=255)

                                                                 tatTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGa                        <  2:6023220/93‑1 (MQ=255)

                                                                  atTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGAc                       <  2:9287264/93‑1 (MQ=255)

                                                                  atTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGAc                       <  1:9699613/93‑1 (MQ=255)

                                                                  atTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGAAACAATCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTACGTGAc                       >  2:4624272/1‑93 (MQ=255)

                                                                    tttttAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTa                     >  1:3794294/1‑93 (MQ=255)

                                                                     ttttAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTAt                    >  1:2640226/1‑93 (MQ=255)

                                                                     ttttAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTAt                    <  1:6093257/93‑1 (MQ=255)

                                                                      tttAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATc                   >  1:2108008/1‑93 (MQ=255)

                                                                      tttAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGCATTGTCCGTGACTATc                   >  2:8441721/1‑93 (MQ=255)

                                                                           ttttgttttTACGGGTGTCGTTTCGGGCTTGCCACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGAGAGGATTGTCCGTGACTATCGAGtt              >  2:6624144/1‑93 (MQ=255)

                                                                            tttgttttTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTc             <  1:5099878/93‑1 (MQ=255)

                                                                             ttgttttTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCt            >  1:113996/1‑93 (MQ=255)

                                                                             ttgttttTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCt            >  2:5503163/1‑93 (MQ=255)

                                                                             ttgttttTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCt            <  2:2622795/93‑1 (MQ=255)

                                                                             ttgttttTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCt            <  1:1341235/93‑1 (MQ=255)

                                                                              tgttttTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTg           <  2:9007870/93‑1 (MQ=255)

                                                                               gttttTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTgg          <  1:2217332/93‑1 (MQ=255)

                                                                                tttttACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTggg         <  2:4713108/93‑1 (MQ=255)

                                                                                tttttACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTggg         <  2:4093675/93‑1 (MQ=255)

                                                                                 ttttACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTgggg        <  1:443144/93‑1 (MQ=255)

                                                                                  tttACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGa       >  1:3265138/1‑93 (MQ=255)

                                                                                   ttACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGaa      <  2:829338/93‑1 (MQ=255)

                                                                                   ttACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGaa      >  2:9743964/1‑93 (MQ=255)

                                                                                     aCGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAata    <  2:2279424/93‑1 (MQ=255)

                                                                                       gggTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATc  <  2:8816381/93‑1 (MQ=255)

                                                                                       gggTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATc  >  1:5848346/1‑93 (MQ=255)

ATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATC  >  NC_000913/1226254‑1226433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCTGG  >  NC_000913/1226251‑1226436

GGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGT                                                                                              <  SRR4302540.9452249/94‑1 (MQ=60)

GGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGT                                                                                              <  SRR4302540.3970604/94‑1 (MQ=60)

GGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGT                                                                                              <  SRR4302540.792569/94‑1 (MQ=60)

GGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGT                                                                                              <  SRR4302540.2264487/94‑1 (MQ=60)

 GCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTG                                                                                             >  SRR4302540.9370208/1‑94 (MQ=60)

  CATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGT                                                                                            <  SRR4302540.5532676/94‑1 (MQ=60)

  CATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGT                                                                                            >  SRR4302540.8690626/1‑94 (MQ=60)

   ATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTC                                                                                           >  SRR4302540.5425971/1‑94 (MQ=60)

   ATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTC                                                                                           >  SRR4302540.7972098/1‑94 (MQ=60)

   ATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTC                                                                                           >  SRR4302540.3659800/1‑94 (MQ=60)

   ATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTC                                                                                           >  SRR4302540.3659801/1‑94 (MQ=60)

    TTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCG                                                                                          <  SRR4302540.3822961/94‑1 (MQ=60)

       ACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTT                                                                                       <  SRR4302540.743841/94‑1 (MQ=60)

        CGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTC                                                                                      >  SRR4302540.8460656/1‑94 (MQ=60)

        CGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTC                                                                                      >  SRR4302540.9898467/1‑94 (MQ=60)

           TTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGG                                                                                   >  SRR4302540.9520034/1‑94 (MQ=60)

           TTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGG                                                                                   <  SRR4302540.179906/94‑1 (MQ=60)

             ATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTT                                                                                 <  SRR4302540.2275914/94‑1 (MQ=60)

              TGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTT                                                                                <  SRR4302540.2982413/94‑1 (MQ=60)

                 CGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCA                                                                             <  SRR4302540.8418506/94‑1 (MQ=60)

                 CGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGGTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCA                                                                             >  SRR4302540.8434347/1‑94 (MQ=60)

                  GGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAC                                                                            >  SRR4302540.3328012/1‑94 (MQ=60)

                  GGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAA                                                                            >  SRR4302540.2507547/1‑94 (MQ=60)

                   GGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAAC                                                                           >  SRR4302540.7592037/1‑94 (MQ=60)

                    GGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACA                                                                          <  SRR4302540.3739050/94‑1 (MQ=60)

                    GGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACA                                                                          <  SRR4302540.9377345/94‑1 (MQ=60)

                    GGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACA                                                                          <  SRR4302540.8497780/94‑1 (MQ=60)

                    GGAGAGGCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACA                                                                          <  SRR4302540.7006150/94‑1 (MQ=60)

                     GAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACAC                                                                         <  SRR4302540.8858526/94‑1 (MQ=60)

                      AGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACT                                                                        >  SRR4302540.4268909/1‑94 (MQ=60)

                      AGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACT                                                                        >  SRR4302540.7662806/1‑94 (MQ=60)

                       GAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTC                                                                       <  SRR4302540.1026964/94‑1 (MQ=60)

                        AGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCG                                                                      >  SRR4302540.1665233/1‑94 (MQ=60)

                        AGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCG                                                                      >  SRR4302540.1665232/1‑94 (MQ=60)

                        AGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCG                                                                      <  SRR4302540.5690802/94‑1 (MQ=60)

                        AGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTCTTACGGGTGTCGTTTCGGGTTTGCAACACTCG                                                                      <  SRR4302540.4942660/94‑1 (MQ=60)

                         GTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGC                                                                     >  SRR4302540.5871881/1‑94 (MQ=60)

                         GTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGC                                                                     >  SRR4302540.5302028/1‑94 (MQ=60)

                         GTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCAC                                                                     >  SRR4302540.2464408/1‑94 (MQ=60)

                            CCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGC                                                                  <  SRR4302540.9468189/94‑1 (MQ=60)

                             CCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTCCGGGGGTCGTTTCGGGTTTGCAACCCTCGCAGCT                                                                 >  SRR4302540.1483605/1‑94 (MQ=60)

                             CCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACCCTCGCAGCT                                                                 >  SRR4302540.1917687/1‑94 (MQ=60)

                             CCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCT                                                                 >  SRR4302540.1917689/1‑94 (MQ=60)

                             CCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCT                                                                 >  SRR4302540.2150033/1‑94 (MQ=60)

                              CGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTC                                                                >  SRR4302540.8491023/1‑94 (MQ=60)

                              CGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTC                                                                >  SRR4302540.1611607/1‑94 (MQ=60)

                              CGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTC                                                                <  SRR4302540.2438601/94‑1 (MQ=60)

                              CGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTC                                                                >  SRR4302540.8491024/1‑94 (MQ=60)

                              CGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTC                                                                <  SRR4302540.4843520/94‑1 (MQ=60)

                              CGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTC                                                                >  SRR4302540.1732661/1‑94 (MQ=60)

                                TCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCAT                                                              <  SRR4302540.7748928/94‑1 (MQ=60)

                                TCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCAT                                                              <  SRR4302540.7748927/94‑1 (MQ=60)

                                 CGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTAGGGGGGGCGTTTCGGGTTTGCAACACTCGCAGCT‑ATAT                                                            >  SRR4302540.5797302/1‑94 (MQ=60)

                                 CGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATA                                                             >  SRR4302540.688251/1‑94 (MQ=60)

                                 CGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATA                                                             >  SRR4302540.9494831/1‑94 (MQ=60)

                                  GGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATAT                                                            >  SRR4302540.7059388/1‑94 (MQ=60)

                                  GGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATAT                                                            <  SRR4302540.5587774/94‑1 (MQ=60)

                                  GGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATAT                                                            >  SRR4302540.7059389/1‑94 (MQ=60)

                                   GTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATT                                                           >  SRR4302540.558332/1‑94 (MQ=60)

                                    TTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTT                                                          <  SRR4302540.1824791/94‑1 (MQ=60)

                                    TTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTT                                                          >  SRR4302540.1663757/1‑94 (MQ=60)

                                    TTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTT                                                          <  SRR4302540.6374465/94‑1 (MQ=60)

                                    TTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTACAACACTCGCAGCTCATATTT                                                          >  SRR4302540.2740380/1‑94 (MQ=60)

                                     TGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTG                                                         <  SRR4302540.9875690/94‑1 (MQ=60)

                                     TGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTG                                                         >  SRR4302540.4682214/1‑94 (MQ=60)

                                     TGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTG                                                         >  SRR4302540.7775239/1‑94 (MQ=60)

                                     TGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTG                                                         >  SRR4302540.3698971/1‑94 (MQ=60)

                                        CATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCA                                                      <  SRR4302540.6946545/94‑1 (MQ=60)

                                        CATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGAGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCA                                                      >  SRR4302540.8027552/1‑94 (MQ=60)

                                         ATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAG                                                     >  SRR4302540.74411/1‑94 (MQ=60)

                                         ATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAG                                                     <  SRR4302540.2255807/94‑1 (MQ=60)

                                         ATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAG                                                     >  SRR4302540.4414144/1‑94 (MQ=60)

                                         ATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAG                                                     >  SRR4302540.4414146/1‑94 (MQ=60)

                                         ATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAG                                                     >  SRR4302540.3150397/1‑94 (MQ=60)

                                         ATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTGGCAACACTCGCAGCTCATATTTGCCAG                                                     <  SRR4302540.1529108/94‑1 (MQ=60)

                                          TTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGA                                                    >  SRR4302540.10124574/1‑94 (MQ=60)

                                           TTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAA                                                   <  SRR4302540.1094555/94‑1 (MQ=60)

                                            TACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAG                                                  >  SRR4302540.5562833/1‑94 (MQ=60)

                                            TACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAG                                                  >  SRR4302540.4522954/1‑94 (MQ=60)

                                            TACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAG                                                  <  SRR4302540.3914001/94‑1 (MQ=60)

                                             ACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGC                                                 <  SRR4302540.7317173/94‑1 (MQ=60)

                                             ACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGC                                                 >  SRR4302540.8458985/1‑94 (MQ=60)

                                              CTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCA                                                <  SRR4302540.7885342/94‑1 (MQ=60)

                                              CTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCA                                                >  SRR4302540.3104827/1‑94 (MQ=60)

                                               TTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAG                                               <  SRR4302540.472111/94‑1 (MQ=60)

                                               TTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAG                                               <  SRR4302540.4578297/94‑1 (MQ=60)

                                               TTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAG                                               <  SRR4302540.8202909/94‑1 (MQ=60)

                                               TTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAG                                               <  SRR4302540.4406150/94‑1 (MQ=60)

                                                TAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGG                                              <  SRR4302540.4292726/94‑1 (MQ=60)

                                                 AATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGG                                             <  SRR4302540.8809335/94‑1 (MQ=60)

                                                 AATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGG                                             <  SRR4302540.254543/94‑1 (MQ=60)

                                                  ATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGA                                            >  SRR4302540.6526/1‑94 (MQ=60)

                                                  ATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGA                                            >  SRR4302540.2342965/1‑94 (MQ=60)

                                                   TTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAG                                           >  SRR4302540.1948946/1‑94 (MQ=60)

                                                   TTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAG                                           <  SRR4302540.3837824/94‑1 (MQ=60)

                                                    TTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGcagaagggggg                                          >  SRR4302540.1284093/1‑83 (MQ=60)

                                                    TTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGT                                          <  SRR4302540.6511731/94‑1 (MQ=60)

                                                    TTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGT                                          <  SRR4302540.9702030/94‑1 (MQ=60)

                                                    TTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGG                                          >  SRR4302540.1284095/1‑94 (MQ=60)

                                                     tagATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTG                                         <  SRR4302540.1256723/91‑1 (MQ=60)

                                                     TGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTG                                         <  SRR4302540.1256722/94‑1 (MQ=60)

                                                     TGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTG                                         <  SRR4302540.3306944/94‑1 (MQ=60)

                                                      GAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGA                                        <  SRR4302540.8952215/94‑1 (MQ=60)

                                                        ATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGT                                      >  SRR4302540.217673/1‑94 (MQ=60)

                                                        ATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGG                                      >  SRR4302540.9680110/1‑94 (MQ=60)

                                                        ATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGA                                      >  SRR4302540.4609805/1‑94 (MQ=60)

                                                        ATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTATGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGA                                      >  SRR4302540.5413566/1‑94 (MQ=60)

                                                         TATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTA                                     >  SRR4302540.3674319/1‑94 (MQ=60)

                                                         TATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTA                                     >  SRR4302540.1278495/1‑94 (MQ=60)

                                                         TATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTA                                     <  SRR4302540.4230673/94‑1 (MQ=60)

                                                          ATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTAT                                    <  SRR4302540.5110421/94‑1 (MQ=60)

                                                           TCGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATT                                   >  SRR4302540.7241344/1‑94 (MQ=60)

                                                            CGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTG                                  <  SRR4302540.5326742/94‑1 (MQ=60)

                                                            CGACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTG                                  <  SRR4302540.5326739/94‑1 (MQ=60)

                                                             GACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGT                                 <  SRR4302540.9441304/94‑1 (MQ=60)

                                                             GACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGT                                 >  SRR4302540.7518207/1‑94 (MQ=60)

                                                             GACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGT                                 <  SRR4302540.8337887/94‑1 (MQ=60)

                                                              ACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTC                                <  SRR4302540.2053939/94‑1 (MQ=60)

                                                              ACGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTC                                >  SRR4302540.8193995/1‑94 (MQ=60)

                                                               CGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGGGGGAGTAGTGTCC                               >  SRR4302540.8607152/1‑94 (MQ=60)

                                                               CGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCC                               <  SRR4302540.9321268/94‑1 (MQ=60)

                                                               CGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCC                               <  SRR4302540.3965162/94‑1 (MQ=60)

                                                               CGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCC                               >  SRR4302540.5108565/1‑94 (MQ=60)

                                                               CGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCC                               >  SRR4302540.1509156/1‑94 (MQ=60)

                                                               CGTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCC                               <  SRR4302540.6941357/94‑1 (MQ=60)

                                                                GTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCG                              <  SRR4302540.999941/94‑1 (MQ=60)

                                                                GTTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCG                              >  SRR4302540.6207998/1‑94 (MQ=60)

                                                                 TTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGT                             >  SRR4302540.5651253/1‑94 (MQ=60)

                                                                 TTATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGT                             <  SRR4302540.3085402/94‑1 (MQ=60)

                                                                  TATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTG                            >  SRR4302540.4564885/1‑94 (MQ=60)

                                                                  TATATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTG                            <  SRR4302540.3176125/94‑1 (MQ=60)

                                                                     ATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCTGGGAGTGAGTATTGTCCGTGACT                         <  SRR4302540.9112534/94‑1 (MQ=60)

                                                                     ATTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACT                         <  SRR4302540.9813652/94‑1 (MQ=60)

                                                                      TTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTA                        <  SRR4302540.8083066/94‑1 (MQ=60)

                                                                      TTTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTA                        >  SRR4302540.3835650/1‑94 (MQ=60)

                                                                       TTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCACCACTCGCAGCCCATATTTGCCcaaaccagggagggcgatctgcgcgcaaccac                       >  SRR4302540.7194415/1‑62 (MQ=60)

                                                                       TTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTAT                       >  SRR4302540.7194414/1‑94 (MQ=60)

                                                                       TTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTAT                       >  SRR4302540.4651308/1‑94 (MQ=60)

                                                                       TTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTAT                       >  SRR4302540.8136644/1‑94 (MQ=60)

                                                                       TTTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTAT                       >  SRR4302540.2668843/1‑94 (MQ=60)

                                                                        TTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATC                      <  SRR4302540.6161080/94‑1 (MQ=60)

                                                                        TTTTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATC                      >  SRR4302540.2130631/1‑94 (MQ=60)

                                                                         TTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTCTCG                     >  SRR4302540.1633017/1‑94 (MQ=60)

                                                                          TTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGA                    >  SRR4302540.1734075/1‑94 (MQ=60)

                                                                          TTAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGA                    <  SRR4302540.9932300/94‑1 (MQ=60)

                                                                           TAGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAG                   <  SRR4302540.2978097/94‑1 (MQ=60)

                                                                            AGTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGT                  >  SRR4302540.6209460/1‑94 (MQ=60)

                                                                            AGTTTTGGTTTTACGGGGGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCACGAAGCAGGGAGTGAGGATTGTCCGTGACTCTAGAGT                  >  SRR4302540.6209462/1‑94 (MQ=60)

                                                                             GTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTT                 >  SRR4302540.6125476/1‑94 (MQ=60)

                                                                             GTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTT                 <  SRR4302540.4442234/94‑1 (MQ=60)

                                                                             GTTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTT                 <  SRR4302540.9582046/94‑1 (MQ=60)

                                                                              TTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGCAGCCGGGAGTGAGTAGTGGCCGTGACTATCGAGTTT                >  SRR4302540.5385441/1‑94 (MQ=60)

                                                                              TTTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTC                >  SRR4302540.5385440/1‑94 (MQ=60)

                                                                               TTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCT               <  SRR4302540.5155071/94‑1 (MQ=60)

                                                                               TTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCT               >  SRR4302540.9710351/1‑94 (MQ=60)

                                                                               TTTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCT               >  SRR4302540.115214/1‑94 (MQ=60)

                                                                                TTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTG              <  SRR4302540.1355283/94‑1 (MQ=60)

                                                                                TTGTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTG              <  SRR4302540.6751863/94‑1 (MQ=60)

                                                                                 TGTTTGTACGGGTGTCGTTTCGGGTTTGCAACACTCGCGGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGG             <  SRR4302540.2784393/94‑1 (MQ=60)

                                                                                  GTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGG            >  SRR4302540.6896054/1‑94 (MQ=60)

                                                                                  GTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGG            <  SRR4302540.2241252/94‑1 (MQ=60)

                                                                                  GTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGG            <  SRR4302540.3844858/94‑1 (MQ=60)

                                                                                  GTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGG            >  SRR4302540.478879/1‑94 (MQ=60)

                                                                                  GTTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGG            >  SRR4302540.8266857/1‑94 (MQ=60)

                                                                                   TTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGG           <  SRR4302540.6836623/94‑1 (MQ=60)

                                                                                   TTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGG           <  SRR4302540.6362522/94‑1 (MQ=60)

                                                                                   TTTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGG           <  SRR4302540.4794799/94‑1 (MQ=60)

                                                                                    TTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGA          <  SRR4302540.447866/94‑1 (MQ=60)

                                                                                    TTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGA          >  SRR4302540.3300763/1‑94 (MQ=60)

                                                                                    TTTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGA          >  SRR4302540.3300765/1‑94 (MQ=60)

                                                                                     TTTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAA         <  SRR4302540.1429556/94‑1 (MQ=60)

                                                                                      TTACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAAT        >  SRR4302540.647591/1‑94 (MQ=60)

                                                                                       TACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATA       >  SRR4302540.2204721/1‑94 (MQ=60)

                                                                                        TCGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATAT      <  SRR4302540.8383649/94‑1 (MQ=60)

                                                                                        TCGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATAT      <  SRR4302540.156098/94‑1 (MQ=60)

                                                                                        ACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATAT      <  SRR4302540.4067677/94‑1 (MQ=60)

                                                                                        ACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATAT      >  SRR4302540.5644888/1‑94 (MQ=60)

                                                                                        ACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATAT      >  SRR4302540.7053152/1‑94 (MQ=60)

                                                                                        ACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATAT      <  SRR4302540.3176245/94‑1 (MQ=60)

                                                                                        ACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATAT      >  SRR4302540.7096849/1‑94 (MQ=60)

                                                                                        ACGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATAT      <  SRR4302540.156097/94‑1 (MQ=60)

                                                                                         CGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATC     >  SRR4302540.2661559/1‑94 (MQ=60)

                                                                                         CGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATC     >  SRR4302540.8051230/1‑94 (MQ=60)

                                                                                         CGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATC     <  SRR4302540.6139191/94‑1 (MQ=60)

                                                                                         CGGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATC     >  SRR4302540.5913031/1‑94 (MQ=60)

                                                                                          GGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCT    >  SRR4302540.3427144/1‑94 (MQ=60)

                                                                                          GGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCT    >  SRR4302540.6590350/1‑94 (MQ=60)

                                                                                          GGGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTCGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCT    <  SRR4302540.7600046/94‑1 (MQ=60)

                                                                                          GGGTGTCGTTTCGGGTTGGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCT    <  SRR4302540.8968881/94‑1 (MQ=60)

                                                                                           GGTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCTG   <  SRR4302540.6378523/94‑1 (MQ=60)

                                                                                            GTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCTGG  <  SRR4302540.9524873/94‑1 (MQ=60)

                                                                                            GTGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCTGG  <  SRR4302540.6642009/94‑1 (MQ=60)

GGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTTCTGGGGAATATCTGG  >  NC_000913/1226251‑1226436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`