Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,360,184	G→A	D84N (GAC→AAC)	ycjC →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,360,184	0	G	A	100.0%	1043.2 / NA	282	D84N (GAC→AAC)	ycjC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (137/145); total (137/145)

Only 100 of 291 total aligned reads displayed.

AAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACGACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACG  >  NC_000913/1360094‑1360273

 aGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACt                                                                                        >  2:5767730/1‑93 (MQ=255)

 aGCTGCGGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACt                                                                                        <  2:5475468/93‑1 (MQ=255)

  gctgctGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACtt                                                                                       >  1:1082275/1‑93 (MQ=255)

  gctgctGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACtt                                                                                       <  1:452789/93‑1 (MQ=255)

   ctgctgAAGGTGTATGGTCAGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAACCCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTa                                                                                      <  2:394767/93‑1 (MQ=255)

     gctgAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAAt                                                                                    <  2:3101996/93‑1 (MQ=255)

     gctgAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAAt                                                                                    <  1:5080458/93‑1 (MQ=255)

     gcggAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAAt                                                                                    <  2:2722924/90‑1 (MQ=255)

      ctgAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAAtt                                                                                   <  1:8575661/93‑1 (MQ=255)

       tgAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTg                                                                                  <  1:9312547/93‑1 (MQ=255)

        gAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTga                                                                                 >  1:3627302/1‑93 (MQ=255)

        gAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTga                                                                                 >  1:5302960/1‑93 (MQ=255)

         aaGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTgag                                                                                >  1:4287884/1‑93 (MQ=255)

          aGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTgaga                                                                               >  2:9026610/1‑93 (MQ=255)

          aGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTgaga                                                                               <  1:9759165/93‑1 (MQ=255)

           ggTGTATGGTCTGTAACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAt                                                                              <  1:2257478/93‑1 (MQ=255)

            gtgtATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATg                                                                             >  2:4041881/1‑93 (MQ=255)

            gtgtATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATg                                                                             <  1:3352778/93‑1 (MQ=255)

            gtgtATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATg                                                                             <  2:5711524/93‑1 (MQ=255)

            gtgtATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATg                                                                             <  1:7260737/93‑1 (MQ=255)

              gtATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATggg                                                                           >  1:6930521/1‑93 (MQ=255)

              gtATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATggg                                                                           <  2:4525031/93‑1 (MQ=255)

               tATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGt                                                                          >  2:8594619/1‑93 (MQ=255)

               tATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGt                                                                          >  2:3673546/1‑93 (MQ=255)

               tATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGt                                                                          >  2:9876143/1‑93 (MQ=255)

                 tGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAg                                                                        >  2:4344729/1‑93 (MQ=255)

                   gTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGta                                                                      >  1:2603835/1‑92 (MQ=255)

                   gTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTc                                                                      <  2:6409941/93‑1 (MQ=255)

                   gTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTc                                                                      <  1:6756112/93‑1 (MQ=255)

                   gTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTc                                                                      >  1:8705014/1‑93 (MQ=255)

                    tCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCa                                                                     <  2:6073617/93‑1 (MQ=255)

                    tCTGTCACTCTCGGAATTCTTTTCCGAGCCCGAAAAACCTGATGAGGCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCa                                                                     >  2:8263041/1‑93 (MQ=255)

                     cTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAg                                                                    <  2:621142/93‑1 (MQ=255)

                      tGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAgg                                                                   <  2:8655366/93‑1 (MQ=255)

                      tGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAgg                                                                   <  2:8449860/93‑1 (MQ=255)

                       ggcgctctCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAggg                                                                  <  2:1454141/89‑1 (MQ=255)

                       gTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAggg                                                                  <  2:9226472/93‑1 (MQ=255)

                         cACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGgtg                                                                >  2:1808350/1‑93 (MQ=255)

                          cctctCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGgtgt                                                               <  1:3182678/92‑1 (MQ=255)

                          aCTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGgtgt                                                               <  2:632633/93‑1 (MQ=255)

                          aCTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGgtgt                                                               >  1:2451281/1‑93 (MQ=255)

                            tctcGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGgtgtgt                                                             >  2:2918202/1‑93 (MQ=255)

                            tctcGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGgtgtgt                                                             >  1:8838341/1‑93 (MQ=255)

                            tctcGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGgtgtgt                                                             >  1:2844240/1‑93 (MQ=255)

                            tctcGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCACGACAACTTAATTGAGATGGGTAGTCAGGgtgtgt                                                             >  2:4837220/1‑93 (MQ=255)

                             ctcGGAATTCTTTTCCGGGCCGGACAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTc                                                            <  1:8974873/93‑1 (MQ=255)

                               cGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCaa                                                          >  1:6271585/1‑93 (MQ=255)

                                ggAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAAt                                                         >  1:4351240/1‑93 (MQ=255)

                                 gAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGCCAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATg                                                        <  1:4870913/93‑1 (MQ=255)

                                 gAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATg                                                        >  1:4142762/1‑93 (MQ=255)

                                 gAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATg                                                        >  2:5344251/1‑93 (MQ=255)

                                  aaTTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGa                                                       <  1:2690586/93‑1 (MQ=255)

                                  aaTTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGa                                                       <  2:2168906/93‑1 (MQ=255)

                                  aaTTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGa                                                       >  2:655229/1‑93 (MQ=255)

                                    ttCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTgaga                                                                               <  2:6767103/67‑1 (MQ=255)

                                    ttCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAg                                                     <  1:723914/93‑1 (MQ=255)

                                    ttCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAg                                                     <  1:5565774/93‑1 (MQ=255)

                                     tCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGc                                                    <  1:1241575/93‑1 (MQ=255)

                                     tCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGc                                                    >  2:1991164/1‑93 (MQ=255)

                                      cTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCt                                                   >  1:6820402/1‑93 (MQ=255)

                                              aGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATa                                           >  2:879915/1‑93 (MQ=255)

                                               gCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATaa                                          <  1:7864964/93‑1 (MQ=255)

                                                 cGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACg                                        <  1:7639748/93‑1 (MQ=255)

                                                 cGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACg                                        <  2:1179912/93‑1 (MQ=255)

                                                   gAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGt                                      >  1:5482959/1‑93 (MQ=255)

                                                   gAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGt                                      >  2:7757988/1‑93 (MQ=255)

                                                    aaaaaCCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTa                                     >  2:1753301/1‑93 (MQ=255)

                                                     aaaaCCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTaa                                    <  1:3533539/93‑1 (MQ=255)

                                                      aaaCCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAAc                                   <  1:9943923/93‑1 (MQ=255)

                                                      aaaCCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAAc                                   <  2:2332319/93‑1 (MQ=255)

                                                         ccTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCg                                <  2:7550625/93‑1 (MQ=255)

                                                         ccTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTGAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCg                                <  2:1041171/93‑1 (MQ=255)

                                                          cTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGa                               <  2:3461732/93‑1 (MQ=255)

                                                           tgatgcACCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAGGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGaa                              <  1:6083992/93‑1 (MQ=255)

                                                            gatgaGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAAt                             <  1:8323331/93‑1 (MQ=255)

                                                            gatgaGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAAt                             <  2:7502382/93‑1 (MQ=255)

                                                            gatgaGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAAt                             <  2:9504452/93‑1 (MQ=255)

                                                                    gCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCt                     <  2:5239147/93‑1 (MQ=255)

                                                                      aGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTgg                   <  1:167201/93‑1 (MQ=255)

                                                                       ggTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGc                  <  2:3399667/93‑1 (MQ=255)

                                                                       ggTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGc                  >  2:9472805/1‑93 (MQ=255)

                                                                       ggTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGc                  >  2:7064582/1‑93 (MQ=255)

                                                                       ggTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGc                  >  2:7904861/1‑93 (MQ=255)

                                                                        gtcgtcATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCg                 >  1:7304316/1‑93 (MQ=255)

                                                                        gtcgtcATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCg                 >  1:2197950/1‑93 (MQ=255)

                                                                         tcgtcATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCga                <  1:8475856/93‑1 (MQ=255)

                                                                          cgtcATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACCGTAACCCGAATCGCCCGCTGGCgat               >  1:7447399/1‑93 (MQ=255)

                                                                            tcATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCgatga             <  2:3997228/93‑1 (MQ=255)

                                                                            tcATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCgatga             >  1:2991477/1‑93 (MQ=255)

                                                                            tcATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAACGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCgatga             >  2:2509225/1‑93 (MQ=255)

                                                                            tcATTAATCAGAGCAGCTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATATCGGTAGCCCGAATCTCTCGCTGGCgatga             <  2:589661/93‑1 (MQ=255)

                                                                              aTTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATc           <  1:8401314/93‑1 (MQ=255)

                                                                              aTTAATCAGGACAACTTAAGTGAGAGGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATc           <  1:5301444/93‑1 (MQ=255)

                                                                                tAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCtt         >  1:6542321/1‑93 (MQ=255)

                                                                                 aaTCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCttt        <  1:3931236/93‑1 (MQ=255)

                                                                                 aaTCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCttt        <  1:9562714/93‑1 (MQ=255)

                                                                                     aGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGaaa    <  2:7175000/93‑1 (MQ=255)

                                                                                     aGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGaaa    <  1:4088778/93‑1 (MQ=255)

                                                                                      ggACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAAc   >  2:725053/1‑93 (MQ=255)

                                                                                      ggACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAAc   <  1:5351344/93‑1 (MQ=255)

AAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACGACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACG  >  NC_000913/1360094‑1360273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACGACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACGTACC  >  NC_000913/1360091‑1360277

CAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACA                                                                                               <  SRR4302540.2695739/94‑1 (MQ=60)

 AAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAA                                                                                              >  SRR4302540.5055487/1‑94 (MQ=60)

   AAGCTGCGTAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACT                                                                                            <  SRR4302540.4496460/94‑1 (MQ=60)

    AGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTT                                                                                           >  SRR4302540.1093361/1‑94 (MQ=60)

     GCTGCTGAAGGTGTATGGTCTGTCTCTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTA                                                                                          <  SRR4302540.6990886/94‑1 (MQ=60)

     GCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTA                                                                                          <  SRR4302540.457621/94‑1 (MQ=60)

      CTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAT                                                                                         >  SRR4302540.7675508/1‑94 (MQ=60)

        GCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATT                                                                                       <  SRR4302540.5363101/94‑1 (MQ=60)

        GCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATT                                                                                       <  SRR4302540.5135383/94‑1 (MQ=60)

         CTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTG                                                                                      >  SRR4302540.8457031/1‑94 (MQ=60)

         CTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTG                                                                                      <  SRR4302540.8675310/94‑1 (MQ=60)

         CTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTG                                                                                      >  SRR4302540.8839156/1‑94 (MQ=60)

          TGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCGCCAGGGCGTCATTAATCAGGACAACTTAATTCA                                                                                     >  SRR4302540.3666999/1‑94 (MQ=60)

          TGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGA                                                                                     >  SRR4302540.3667000/1‑94 (MQ=60)

          TGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGA                                                                                     >  SRR4302540.5360979/1‑94 (MQ=60)

          TGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGA                                                                                     <  SRR4302540.9423707/94‑1 (MQ=60)

           GAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAG                                                                                    >  SRR4302540.8776962/1‑94 (MQ=60)

           GAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAG                                                                                    >  SRR4302540.4334529/1‑94 (MQ=60)

            AAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGA                                                                                   <  SRR4302540.606905/94‑1 (MQ=60)

            AAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGA                                                                                   <  SRR4302540.2633911/94‑1 (MQ=60)

            AAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGA                                                                                   <  SRR4302540.1286311/94‑1 (MQ=60)

             AGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAT                                                                                  <  SRR4302540.582199/94‑1 (MQ=60)

             AGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAT                                                                                  <  SRR4302540.9873641/94‑1 (MQ=60)

             AGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAT                                                                                  <  SRR4302540.2955297/94‑1 (MQ=60)

             AGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAT                                                                                  <  SRR4302540.5392280/94‑1 (MQ=60)

             AGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAT                                                                                  <  SRR4302540.9328713/94‑1 (MQ=60)

             AGGTGTATGGTCTGTCACTCTCGGAATTCTTTTACGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAT                                                                                  <  SRR4302540.9811113/94‑1 (MQ=60)

              GGTGTATGGTCTGTAACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATG                                                                                 <  SRR4302540.2281708/94‑1 (MQ=60)

               ggggttgggcgttgcctcttGGAATTCTTTTCCGAGCCGGAAAAACCTGAGGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGG                                                                                <  SRR4302540.7341754/74‑1 (MQ=60)

               GTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGG                                                                                <  SRR4302540.7341751/94‑1 (MQ=60)

               GTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGG                                                                                <  SRR4302540.3389528/94‑1 (MQ=60)

                TGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGG                                                                               >  SRR4302540.7246713/1‑94 (MQ=60)

                TGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGG                                                                               >  SRR4302540.7007643/1‑94 (MQ=60)

                 GTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGT                                                                              >  SRR4302540.4014228/1‑94 (MQ=60)

                 GTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGT                                                                              >  SRR4302540.7324100/1‑94 (MQ=60)

                  TATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTA                                                                             >  SRR4302540.4275109/1‑94 (MQ=60)

                  TATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTA                                                                             <  SRR4302540.6969057/94‑1 (MQ=60)

                     GGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTC                                                                          >  SRR4302540.8806058/1‑94 (MQ=60)

                     GGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTC                                                                          >  SRR4302540.3160796/1‑94 (MQ=60)

                     GGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTA                                                                          >  SRR4302540.2631924/1‑94 (MQ=60)

                      GTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCA                                                                         <  SRR4302540.6830765/94‑1 (MQ=60)

                       TCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAG                                                                        >  SRR4302540.8477334/1‑94 (MQ=60)

                         TGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGG                                                                      >  SRR4302540.6352899/1‑94 (MQ=60)

                         TGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGG                                                                      <  SRR4302540.4169428/94‑1 (MQ=60)

                         TGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGG                                                                      >  SRR4302540.7444664/1‑94 (MQ=60)

                         TGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGG                                                                      >  SRR4302540.4156857/1‑94 (MQ=60)

                           TCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTG                                                                    >  SRR4302540.3692709/1‑94 (MQ=60)

                           TCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTG                                                                    <  SRR4302540.8850523/94‑1 (MQ=60)

                            CACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGT                                                                   >  SRR4302540.2477676/1‑94 (MQ=60)

                            CACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGT                                                                   <  SRR4302540.3661950/94‑1 (MQ=60)

                            CACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGT                                                                   >  SRR4302540.7092312/1‑94 (MQ=60)

                             CCTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTG                                                                  <  SRR4302540.3217260/94‑1 (MQ=60)

                             ACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTG                                                                  >  SRR4302540.8137589/1‑94 (MQ=60)

                             ACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTG                                                                  >  SRR4302540.2255215/1‑94 (MQ=60)

                             ACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTG                                                                  >  SRR4302540.4327174/1‑94 (MQ=60)

                             ACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTG                                                                  >  SRR4302540.858567/1‑94 (MQ=60)

                              CTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGT                                                                 >  SRR4302540.2875017/1‑94 (MQ=60)

                              CTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGT                                                                 <  SRR4302540.9148218/94‑1 (MQ=60)

                              CTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGT                                                                 >  SRR4302540.8940567/1‑94 (MQ=60)

                                CTCGGAATTCTTTTCCGGGCCGGACAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCA                                                               <  SRR4302540.9081601/94‑1 (MQ=60)

                                CTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCA                                                               >  SRR4302540.2038815/1‑94 (MQ=60)

                                CTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCA                                                               <  SRR4302540.40047/94‑1 (MQ=60)

                                 TCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAA                                                              >  SRR4302540.6341365/1‑94 (MQ=60)

                                 TCCGAATTCTTTTCCGAGCCGGAAAAACCTGAAGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGCTGGGTAGTCAGGGTGTGTCAA                                                              >  SRR4302540.6341367/1‑94 (MQ=60)

                                  CGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAAT                                                             >  SRR4302540.4398574/1‑94 (MQ=60)

                                   GGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATG                                                            >  SRR4302540.2437221/1‑94 (MQ=60)

                                   GGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATG                                                            <  SRR4302540.8012205/94‑1 (MQ=60)

                                   GGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATG                                                            >  SRR4302540.4187587/1‑94 (MQ=60)

                                    GAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGCCAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGA                                                           <  SRR4302540.4923170/94‑1 (MQ=60)

                                    GAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGA                                                           >  SRR4302540.3885373/1‑94 (MQ=60)

                                     atttctgtgcgGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAA                                                          <  SRR4302540.6315570/83‑1 (MQ=60)

                                     AATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAA                                                          <  SRR4302540.4373011/94‑1 (MQ=60)

                                     AATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAA                                                          >  SRR4302540.2786744/1‑94 (MQ=60)

                                     AATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAA                                                          <  SRR4302540.2719655/94‑1 (MQ=60)

                                      ATTCTTTTCCGAGCCGGAAAAACCTGCTGAGCCGCAGGTCGTCATTAAACAGGACAACTTAATTGAGATaagcgctagatcggaagagcgggtc                                                         >  SRR4302540.6841893/1‑69 (MQ=60)

                                      ATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATaagcgctagatcggaagagcggttc                                                         >  SRR4302540.6841894/1‑69 (MQ=60)

                                      ATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAG                                                         >  SRR4302540.6829318/1‑94 (MQ=60)

                                       TTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGC                                                        <  SRR4302540.5627063/94‑1 (MQ=60)

                                       TTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGC                                                        >  SRR4302540.3249169/1‑94 (MQ=60)

                                       TTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGC                                                        <  SRR4302540.731671/94‑1 (MQ=60)

                                       TGCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCAGTAATCAGGACAACTTAATTGAGAGGGGTAGTCAGGGTGTGTCAATGAAGC                                                        <  SRR4302540.5590333/94‑1 (MQ=60)

                                        TCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCT                                                       >  SRR4302540.6895904/1‑94 (MQ=60)

                                        TCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCT                                                       <  SRR4302540.7666621/94‑1 (MQ=60)

                                        TCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCT                                                       <  SRR4302540.1254245/94‑1 (MQ=60)

                                        TCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCT                                                       <  SRR4302540.8770770/94‑1 (MQ=60)

                                          TTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGG                                                     >  SRR4302540.121786/1‑94 (MQ=60)

                                               CGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTATCAATGAAGCTGGTTCAT                                                >  SRR4302540.9055368/1‑94 (MQ=60)

                                                 AGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAA                                              >  SRR4302540.8570351/1‑94 (MQ=60)

                                                  GCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAAC                                             <  SRR4302540.7956851/94‑1 (MQ=60)

                                                   CCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACG                                            >  SRR4302540.5564246/1‑94 (MQ=60)

                                                    CGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGG                                           <  SRR4302540.7725719/94‑1 (MQ=60)

                                                     GGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGT                                          <  SRR4302540.7350719/94‑1 (MQ=60)

                                                     GGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGT                                          >  SRR4302540.9662034/1‑94 (MQ=60)

                                                     GGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGT                                          >  SRR4302540.5543321/1‑94 (MQ=60)

                                                       AAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAA                                        >  SRR4302540.6247775/1‑94 (MQ=60)

                                                       AAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAA                                        >  SRR4302540.1523049/1‑94 (MQ=60)

                                                        AAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAAC                                       <  SRR4302540.5303178/94‑1 (MQ=60)

                                                        AAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAAC                                       <  SRR4302540.5303176/94‑1 (MQ=60)

                                                        AAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAAC                                       <  SRR4302540.7853199/94‑1 (MQ=60)

                                                        AAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAAC                                       <  SRR4302540.4439299/94‑1 (MQ=60)

                                                        AAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAAC                                       <  SRR4302540.3572113/94‑1 (MQ=60)

                                                        AAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAAC                                       <  SRR4302540.7853200/94‑1 (MQ=60)

                                                         AAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACC                                      <  SRR4302540.6195268/94‑1 (MQ=60)

                                                         AAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACC                                      <  SRR4302540.10060046/94‑1 (MQ=60)

                                                          AACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCC                                     >  SRR4302540.7496881/1‑94 (MQ=60)

                                                          AACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCC                                     >  SRR4302540.266700/1‑94 (MQ=60)

                                                          AACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCC                                     >  SRR4302540.462608/1‑94 (MQ=60)

                                                          AACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCC                                     <  SRR4302540.8524526/94‑1 (MQ=60)

                                                           ACCTGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCG                                    >  SRR4302540.6758742/1‑94 (MQ=60)

                                                              TGATGCACCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGAGGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAAT                                 <  SRR4302540.6151703/94‑1 (MQ=60)

                                                              TGATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAAT                                 >  SRR4302540.3276352/1‑94 (MQ=60)

                                                               GATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATC                                <  SRR4302540.9610143/94‑1 (MQ=60)

                                                               GATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATC                                <  SRR4302540.8419939/94‑1 (MQ=60)

                                                               GATGAGCCGCAGGTCGTCATTAATCAGGACAACTTAATTAGGATGGGGAGTCAGGGTGGGCCAATGAAGCGGGTTAATAACGGTAACCGGAATC                                >  SRR4302540.5700939/1‑94 (MQ=53)

                                                               GATGAGCCGCAGGTCGTCATTAATCAGGACAACATAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATC                                <  SRR4302540.9820174/94‑1 (MQ=60)

                                                                   AGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCAC                            <  SRR4302540.1992134/94‑1 (MQ=60)

                                                                   AGCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCAC                            <  SRR4302540.2341665/94‑1 (MQ=60)

                                                                    GCCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACG                           <  SRR4302540.5437856/94‑1 (MQ=60)

                                                                     CCGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGC                          >  SRR4302540.4987762/1‑94 (MQ=60)

                                                                      CGCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCT                         >  SRR4302540.3209655/1‑94 (MQ=60)

                                                                       GCAGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTG                        >  SRR4302540.4341663/1‑94 (MQ=60)

                                                                         AGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGC                      <  SRR4302540.168878/94‑1 (MQ=60)

                                                                         AGGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGC                      >  SRR4302540.5024021/1‑94 (MQ=60)

                                                                          GGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCG                     >  SRR4302540.7385852/1‑94 (MQ=60)

                                                                          GGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCG                     >  SRR4302540.2221685/1‑94 (MQ=60)

                                                                          GGTCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCG                     >  SRR4302540.2221686/1‑94 (MQ=60)

                                                                            TCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGAT                   <  SRR4302540.6838644/94‑1 (MQ=60)

                                                                            TCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGAT                   <  SRR4302540.8574299/94‑1 (MQ=60)

                                                                            TCGTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACCGTAACCCGAATCGCCCGCTGGCGAT                   >  SRR4302540.7530388/1‑94 (MQ=60)

                                                                              GTCATTAATCAGGACAACTTATTTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGA                 >  SRR4302540.9892372/1‑94 (MQ=60)

                                                                              GTCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGA                 >  SRR4302540.3024454/1‑94 (MQ=60)

                                                                               TCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGAT                <  SRR4302540.2484890/94‑1 (MQ=60)

                                                                               TCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGAT                >  SRR4302540.2776235/1‑94 (MQ=60)

                                                                               TCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGAT                <  SRR4302540.4755496/94‑1 (MQ=60)

                                                                               TCATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATACAGCTGGTTCATAACGGTAACCCGAACCGCCCGCTGACGAGGAT                >  SRR4302540.2630964/1‑94 (MQ=60)

                                                                                 ATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCT              <  SRR4302540.5359452/94‑1 (MQ=60)

                                                                                 ATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCT              <  SRR4302540.2986238/94‑1 (MQ=60)

                                                                                 ATTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCT              <  SRR4302540.8498820/94‑1 (MQ=60)

                                                                                 ATTAATCAGGACAACTTAAGTGAGAGGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCT              <  SRR4302540.5359451/94‑1 (MQ=60)

                                                                                  TTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTT             >  SRR4302540.6614921/1‑94 (MQ=60)

                                                                                  TTAATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTT             <  SRR4302540.10032044/94‑1 (MQ=60)

                                                                                    AATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTG           <  SRR4302540.3973738/94‑1 (MQ=60)

                                                                                    AATCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTG           <  SRR4302540.9675756/94‑1 (MQ=60)

                                                                                      TCAGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAA         >  SRR4302540.8660139/1‑94 (MQ=60)

                                                                                        AGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAAC       <  SRR4302540.7362388/94‑1 (MQ=60)

                                                                                        AGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAAC       <  SRR4302540.5436989/94‑1 (MQ=60)

                                                                                        AGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAAC       >  SRR4302540.348271/1‑94 (MQ=60)

                                                                                        AGGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAAC       <  SRR4302540.4132877/94‑1 (MQ=60)

                                                                                         GGACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACG      <  SRR4302540.5410074/94‑1 (MQ=60)

                                                                                          GACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACGT     >  SRR4302540.1547162/1‑94 (MQ=60)

                                                                                           ACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACGTA    >  SRR4302540.919347/1‑94 (MQ=60)

                                                                                           ACAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACGTA    >  SRR4302540.5497044/1‑94 (MQ=60)

                                                                                            CAACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACGTAC   <  SRR4302540.492236/94‑1 (MQ=60)

                                                                                             AACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACGTACC  <  SRR4302540.7099550/94‑1 (MQ=60)

CAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCGAGCCGGAAAAACCTGATGAGCCGCAGGTCGTCATTAATCAGGACGACTTAATTGAGATGGGTAGTCAGGGTGTGTCAATGAAGCTGGTTCATAACGGTAACCCGAATCGCACGCTGGCGATGATCTTTGAAACGTACC  >  NC_000913/1360091‑1360277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`