Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,472,351 |
A→G |
H36R (CAC→CGC) |
ydbC → |
putative dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,472,351 | 0 | A | G | 98.6%
| 662.7
/ ‑1.4
| 214 | H36R (CAC→CGC) | ydbC | putative dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (3/0); new base G (78/133); total (81/133) |
| Fisher's exact test for biased strand distribution p-value = 5.30e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 |
Only 100 of 224 total aligned reads displayed.
TACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGG‑‑CC‑CCCCACGAGATCGCCACGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATC > NC_000913/1472262‑1472440
|
tACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCcgcg > 1:3389584/1‑93 (MQ=255)
aCTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGt > 1:8992207/1‑93 (MQ=255)
ctcGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGc < 2:2449779/93‑1 (MQ=255)
tcGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCt > 1:3056020/1‑93 (MQ=255)
cGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCta < 1:1876655/93‑1 (MQ=255)
gTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGCCGCtata > 1:7147148/1‑93 (MQ=255)
aCAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAAc < 2:2974769/93‑1 (MQ=255)
aCAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGA‑CC‑CCCCACGAGATCGCCGCGTCGCTATAAc > 1:9158212/1‑93 (MQ=255)
aaaTCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGt > 1:6080046/1‑93 (MQ=255)
aTCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGCTCGCCGCGTCGCTATAACCGtgc > 2:6937268/1‑93 (MQ=255)
aTCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGtgc < 2:629311/93‑1 (MQ=255)
aTCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGtgc < 2:7805686/93‑1 (MQ=255)
aTCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGtgc < 1:1179006/93‑1 (MQ=255)
tCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGG‑‑CC‑CCCCACGAGATCGCCACGTCGCTATAACCGtgctg > 2:3408935/1‑93 (MQ=255)
tCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GGTTTTGG‑‑CCTCCCCACGAGATGGCCGGGTCGCTATAACCGtgcg > 2:6492197/1‑92 (MQ=255)
accGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGtgct < 2:2570190/92‑1 (MQ=255)
ccGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGtgctg > 1:3691784/1‑93 (MQ=255)
cGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGtgctgc < 1:3983472/93‑1 (MQ=255)
ttAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGt < 2:8890295/93‑1 (MQ=255)
tAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGGTTTTCGC‑‑CC‑CCCCACGAGATCGGCGCGTCGCTATAACCGTGCTGCGTg > 2:6665199/1‑93 (MQ=255)
tAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTg < 1:616368/93‑1 (MQ=255)
aaCCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGa > 1:542269/1‑93 (MQ=255)
aCCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGCCCC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGa < 1:6211355/93‑1 (MQ=255)
ccGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAgg < 2:9123530/93‑1 (MQ=255)
cGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGgc < 2:2827125/93‑1 (MQ=255)
cGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGgc < 2:5382987/93‑1 (MQ=255)
cGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGgc < 1:6893433/93‑1 (MQ=255)
gTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGgcg > 1:6514155/1‑93 (MQ=255)
tCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGgcgc < 2:1555843/93‑1 (MQ=255)
tCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGgcgc < 2:8230813/93‑1 (MQ=255)
tCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGgcgc < 1:4875409/93‑1 (MQ=255)
cTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCt < 1:4399262/93‑1 (MQ=255)
cTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCt < 2:9524684/93‑1 (MQ=255)
ttGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTg > 1:2562156/1‑93 (MQ=255)
ttGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTg > 2:7629988/1‑93 (MQ=255)
tGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTgg < 2:5127811/93‑1 (MQ=255)
gTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCa < 2:6085172/93‑1 (MQ=255)
ttATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCAt < 2:1379335/93‑1 (MQ=255)
aTGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTg < 2:8612359/93‑1 (MQ=255)
aTGGCGCCATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTg < 1:5788492/93‑1 (MQ=255)
ggCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTggg < 2:8970205/93‑1 (MQ=255)
ggCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTggg < 1:9964638/93‑1 (MQ=255)
cgcgATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCg < 2:4925616/93‑1 (MQ=255)
cgATGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTc < 2:3240604/93‑1 (MQ=255)
aTGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCaa < 1:7961552/93‑1 (MQ=255)
tGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAAt > 2:1054551/1‑93 (MQ=255)
tGCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAAt > 2:6802352/1‑93 (MQ=255)
gCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATc < 2:4087240/93‑1 (MQ=255)
gCAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATc < 2:6895929/93‑1 (MQ=255)
cAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCGCGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCa < 1:6819536/93‑1 (MQ=255)
cAACTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCa < 2:5684098/93‑1 (MQ=255)
aaCTGGCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCat < 1:3635534/93‑1 (MQ=255)
tGGCAGGCCCTGGA‑GTTTTTGGA‑CC‑CCCCCCGAGATCGCCGCGTCGCTATAACCGTGCTGCGCGAGGAGCTGGCATCGGGCGTCAATCATCtt > 2:968799/1‑93 (MQ=255)
ggCAGGTGCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTg < 1:7693418/93‑1 (MQ=255)
ggCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTg < 1:5026568/93‑1 (MQ=255)
ggCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTg > 2:1221372/1‑93 (MQ=255)
ggCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTg > 1:5184807/1‑93 (MQ=255)
gCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGa < 1:1509648/93‑1 (MQ=255)
gCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGa > 2:2103002/1‑93 (MQ=255)
gCAGGTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGa < 1:2277289/93‑1 (MQ=255)
aGGTCCTGGA‑GTTTTTGGCCCC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGGCAATCATACTGAt > 2:2931149/1‑93 (MQ=255)
gTCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATAcc > 1:8690331/1‑93 (MQ=255)
tCCTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCa < 2:2588646/93‑1 (MQ=255)
cTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGc < 1:4523787/93‑1 (MQ=255)
cTGGA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATAATATTGATACCAGc > 2:4266126/1‑93 (MQ=255)
ggA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGa > 2:9378375/1‑93 (MQ=255)
ggA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGa > 1:1132029/1‑93 (MQ=255)
ggA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGa < 1:5092354/93‑1 (MQ=255)
gA‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGAc > 1:435762/1‑93 (MQ=255)
a‑GTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACt < 1:6668684/93‑1 (MQ=255)
gTTTTTGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACtt < 1:1347859/93‑1 (MQ=255)
tttGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTa < 1:5638872/93‑1 (MQ=255)
tttGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTa < 1:8458559/93‑1 (MQ=255)
tttGGC‑CC‑CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTa < 2:2380084/93‑1 (MQ=255)
tggccc‑ccccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATg < 1:9341106/89‑1 (MQ=255)
ggccc‑ccccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATgg < 2:4538243/90‑1 (MQ=255)
ggccc‑ccccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATgg < 2:9549899/90‑1 (MQ=255)
gccc‑ccccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGt < 2:4406948/91‑1 (MQ=255)
ccc‑ccccACGAGATCGCCGCGTCGCTATAGCCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTc < 2:3776146/92‑1 (MQ=255)
ccc‑ccccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTc > 1:7657999/2‑93 (MQ=255)
cccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCa < 2:6037960/93‑1 (MQ=255)
cccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCa > 2:1791465/1‑93 (MQ=255)
ccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCAc < 1:1296202/93‑1 (MQ=255)
ccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCAc < 2:1687765/93‑1 (MQ=255)
ccACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCAc < 1:1607478/93‑1 (MQ=255)
aCGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGt > 1:2069293/1‑93 (MQ=255)
aCGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGt < 1:8096778/93‑1 (MQ=255)
cGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTc > 2:3794490/1‑93 (MQ=255)
cGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTc < 2:6617520/93‑1 (MQ=255)
cGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTc < 2:7138721/93‑1 (MQ=255)
gagaTCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCa < 1:1646395/93‑1 (MQ=255)
agaTCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCAc > 2:8335140/1‑93 (MQ=255)
agaTCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCAc < 1:1673399/93‑1 (MQ=255)
agaTCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCAc > 2:5328592/1‑93 (MQ=255)
gaTCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATTGTCCGCACGTCAcc > 2:507844/1‑93 (MQ=255)
gaTCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCAcc < 1:9755612/93‑1 (MQ=255)
aTCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCa < 2:193402/93‑1 (MQ=255)
tCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCaa < 2:7228579/93‑1 (MQ=255)
tCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCaa > 1:7750371/1‑93 (MQ=255)
tCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCaa < 2:5900547/93‑1 (MQ=255)
|
TACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGA‑GTTTTTGG‑‑CC‑CCCCACGAGATCGCCACGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATC > NC_000913/1472262‑1472440
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑G‑‑CCCCCCACGAGATCGCCACGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGAT > NC_000913/1472261‑1472444
|
TTACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCG < SRR4302540.4499716/94‑1 (MQ=60)
TTACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCG < SRR4302540.472600/94‑1 (MQ=60)
TTACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCG > SRR4302540.3426565/1‑94 (MQ=60)
TACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGT > SRR4302540.9099987/1‑94 (MQ=60)
ACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTC < SRR4302540.8701716/94‑1 (MQ=60)
ACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTC < SRR4302540.5842848/94‑1 (MQ=60)
CTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCG > SRR4302540.7985084/1‑94 (MQ=60)
TCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGC > SRR4302540.7814751/1‑94 (MQ=60)
CTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCT < SRR4302540.7098109/94‑1 (MQ=60)
CTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCT > SRR4302540.3089547/1‑94 (MQ=60)
CGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTAT < SRR4302540.1897207/94‑1 (MQ=60)
GGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GCCCCCCCCACGAGATCGCCGCGTCGCTAT > SRR4302540.3700903/1‑94 (MQ=60)
GGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGCCGCTATA > SRR4302540.7226791/1‑94 (MQ=60)
GGTACAAAATCCGTTAACCGTATTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATA < SRR4302540.5106293/94‑1 (MQ=60)
GTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAA < SRR4302540.3610739/94‑1 (MQ=60)
TACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GA‑CCCCCCACGAGATCGCCGCGTCGCTATAAC > SRR4302540.9268144/1‑94 (MQ=60)
TACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGCCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGAGCGCCGCTTCGCTATAAC > SRR4302540.3376405/1‑94 (MQ=60)
AAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGT > SRR4302540.6147659/1‑94 (MQ=60)
ATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCT > SRR4302540.7002196/1‑94 (MQ=60)
ATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCT > SRR4302540.4101662/1‑94 (MQ=60)
ATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCT < SRR4302540.1191187/94‑1 (MQ=60)
TCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTG > SRR4302540.3732105/1‑94 (MQ=60)
CCGTTAGCCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑G‑‑CCCCCCACGAGATCGCCGCCTCGCTATAACCGTGCTGCG < SRR4302540.8305240/94‑1 (MQ=60)
CCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGC > SRR4302540.9321757/1‑94 (MQ=60)
CGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCG < SRR4302540.4026368/94‑1 (MQ=60)
TAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GCCCCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTG < SRR4302540.4697354/94‑1 (MQ=60)
TAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGA < SRR4302540.622942/94‑1 (MQ=60)
TAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGA < SRR4302540.8505422/94‑1 (MQ=60)
TAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGA < SRR4302540.1318831/94‑1 (MQ=60)
TAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGA > SRR4302540.548134/1‑94 (MQ=60)
AACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAG < SRR4302540.1843671/94‑1 (MQ=60)
ACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GCCCCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAG < SRR4302540.1612414/94‑1 (MQ=60)
ACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GCCCCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAG < SRR4302540.6280474/94‑1 (MQ=60)
ACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGG < SRR4302540.1623729/94‑1 (MQ=60)
ACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGG < SRR4302540.10003804/94‑1 (MQ=60)
CCGTCTTGATTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCTCGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGC < SRR4302540.5591654/94‑1 (MQ=60)
CGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCG > SRR4302540.6586523/1‑94 (MQ=60)
CGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCG < SRR4302540.6969920/94‑1 (MQ=60)
GTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGC > SRR4302540.901835/1‑94 (MQ=60)
TCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCT < SRR4302540.4927734/94‑1 (MQ=60)
CTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTGCCC‑‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCT < SRR4302540.9127751/94‑1 (MQ=60)
CTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTG < SRR4302540.4446976/94‑1 (MQ=60)
CTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTG > SRR4302540.2589778/1‑94 (MQ=60)
CTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTG > SRR4302540.2589777/1‑94 (MQ=60)
CTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTG > SRR4302540.1498883/1‑94 (MQ=60)
TTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGG > SRR4302540.6614651/1‑94 (MQ=60)
GTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCAT < SRR4302540.1274072/94‑1 (MQ=60)
TATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTG > SRR4302540.2176215/1‑94 (MQ=60)
ATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGG < SRR4302540.5512835/94‑1 (MQ=60)
ATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGG < SRR4302540.9780177/94‑1 (MQ=60)
ATGGCGCCATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGG < SRR4302540.5852446/94‑1 (MQ=60)
TGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGG > SRR4302540.1005314/1‑94 (MQ=60)
GGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGC < SRR4302540.10080896/94‑1 (MQ=60)
GCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTC < SRR4302540.5913297/94‑1 (MQ=60)
CGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCA < SRR4302540.4351039/94‑1 (MQ=60)
GATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAA > SRR4302540.6496319/1‑94 (MQ=60)
ATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAAT < SRR4302540.8054338/94‑1 (MQ=60)
GCAACTGGCAGGTCCTGGAGTTTTTGC‑C‑‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCA < SRR4302540.8869003/94‑1 (MQ=60)
CAACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCGCGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCAT < SRR4302540.6895025/94‑1 (MQ=60)
AACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATA < SRR4302540.3675331/94‑1 (MQ=60)
AACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATA < SRR4302540.4441616/94‑1 (MQ=60)
AACTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATA < SRR4302540.5016634/94‑1 (MQ=60)
CTGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATT > SRR4302540.6270504/1‑94 (MQ=60)
TGGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTG > SRR4302540.5241248/1‑94 (MQ=60)
GGCAGGTGCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGA < SRR4302540.7780991/94‑1 (MQ=60)
GGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGA < SRR4302540.5080973/94‑1 (MQ=60)
GGCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGA < SRR4302540.7780990/94‑1 (MQ=60)
GCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGAT < SRR4302540.1526326/94‑1 (MQ=60)
GCAGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGAT < SRR4302540.2301743/94‑1 (MQ=60)
AGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATAC < SRR4302540.6933078/94‑1 (MQ=60)
AGGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATAC < SRR4302540.4970194/94‑1 (MQ=60)
GGTCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACC > SRR4302540.8791230/1‑94 (MQ=60)
TCCTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAG > SRR4302540.3999545/1‑94 (MQ=60)
CTGGAGTTTTTG‑‑GCCCCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGC > SRR4302540.4521238/1‑94 (MQ=60)
CTGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCG < SRR4302540.4572776/94‑1 (MQ=60)
TGGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGA > SRR4302540.1143814/1‑94 (MQ=60)
GGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGAC < SRR4302540.5147443/94‑1 (MQ=60)
GGAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGAC > SRR4302540.440380/1‑94 (MQ=60)
GAGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACT > SRR4302540.79875/1‑94 (MQ=60)
AGTTTTTGC‑C‑‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTT > SRR4302540.8783334/1‑94 (MQ=60)
AGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTT < SRR4302540.200644/94‑1 (MQ=60)
AGTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTT < SRR4302540.6742384/94‑1 (MQ=60)
GTTTTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTT < SRR4302540.1362013/94‑1 (MQ=60)
TTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTAT < SRR4302540.8556771/94‑1 (MQ=60)
TTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTAT < SRR4302540.5700934/94‑1 (MQ=60)
TTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTAT < SRR4302540.1950522/94‑1 (MQ=60)
TTTG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTAT < SRR4302540.1145676/94‑1 (MQ=60)
TTG‑‑GCCCCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTAT < SRR4302540.4113120/94‑1 (MQ=60)
TG‑‑GC‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGG < SRR4302540.9452422/94‑1 (MQ=60)
G‑‑C‑‑CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTC > SRR4302540.7744227/1‑94 (MQ=60)
CCCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCG < SRR4302540.6155429/94‑1 (MQ=60)
CCCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGC < SRR4302540.1652110/94‑1 (MQ=60)
CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCA < SRR4302540.5273597/94‑1 (MQ=60)
CCCCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCA > SRR4302540.2720474/1‑94 (MQ=60)
CCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACG < SRR4302540.1309622/94‑1 (MQ=60)
CCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACG < SRR4302540.1681934/94‑1 (MQ=60)
CCACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACG < SRR4302540.1625072/94‑1 (MQ=60)
CACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGT > SRR4302540.2091549/1‑94 (MQ=60)
ACGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTC < SRR4302540.8190756/94‑1 (MQ=60)
CGAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCATGTCA > SRR4302540.679321/1‑94 (MQ=60)
GAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCAC < SRR4302540.1664364/94‑1 (MQ=60)
GAGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCAC > SRR4302540.8144113/1‑94 (MQ=60)
GAGATCGCCGCGTCGCTATAACCGTGCTGCGCGAGGCGCTGGCATTAGCGGTCAATCATATTGATACCAGCGACTTTTATGGTGCGCACGTCAC > SRR4302540.10010620/1‑94 (MQ=60)
AGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACC < SRR4302540.1691583/94‑1 (MQ=60)
AGATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACC < SRR4302540.3321893/94‑1 (MQ=60)
GATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCA < SRR4302540.9870065/94‑1 (MQ=60)
GATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCA > SRR4302540.6326755/1‑94 (MQ=60)
ATCGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAA > SRR4302540.7840883/1‑94 (MQ=60)
CGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATC < SRR4302540.7234870/94‑1 (MQ=60)
CGCCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATC < SRR4302540.5240402/94‑1 (MQ=60)
CCGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAG < SRR4302540.5013757/94‑1 (MQ=60)
CGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGA > SRR4302540.8728648/1‑94 (MQ=60)
CGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGA > SRR4302540.3220192/1‑94 (MQ=60)
CGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGA < SRR4302540.2668453/94‑1 (MQ=60)
CGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGA > SRR4302540.60841/1‑94 (MQ=60)
CGCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGA > SRR4302540.1532131/1‑94 (MQ=60)
GCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGAT < SRR4302540.4221182/94‑1 (MQ=60)
GCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGAT < SRR4302540.4116083/94‑1 (MQ=60)
GCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGAT > SRR4302540.2551972/1‑94 (MQ=60)
GCGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGAT < SRR4302540.6786295/94‑1 (MQ=60)
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TTACTCTCGGTACAAAATCCGTTAACCGTCTTGGTTATGGCGCGATGCAACTGGCAGGTCCTGGAGTTTTTG‑‑G‑‑CCCCCCACGAGATCGCCACGTCGCTATAACCGTGCTGCGTGAGGCGCTGGCATTGGGCGTCAATCATATTGATACCAGCGACTTTTATGGTCCGCACGTCACCAATCAGAT > NC_000913/1472261‑1472444
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
