Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,680,496 |
(C)5→4 |
coding (323/729 nt) |
rstA → |
response transcriptional regulatory protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,680,492 | 0 | C | . | 100.0%
| 1163.2
/ NA
| 256 | coding (319/729 nt) | rstA | response transcriptional regulatory protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (133/123); total (133/123) |
Only 100 of 298 total aligned reads displayed.
GACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCT > NC_000913/1680400‑1680580
|
gACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGc > 2:9536118/1‑93 (MQ=255)
ccGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGccc < 1:4812140/93‑1 (MQ=255)
ccGATTGTTCTTCTAACCTCTCTCGATAGAGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGccc > 2:6921399/1‑93 (MQ=255)
cGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccc > 2:8797970/1‑93 (MQ=255)
cGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccc < 1:7143732/93‑1 (MQ=255)
cGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccc < 2:4872754/93‑1 (MQ=255)
gATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccct > 2:798357/1‑92 (MQ=255)
gATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccct > 1:9058803/1‑92 (MQ=255)
gATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccct > 2:6256582/1‑92 (MQ=255)
aTTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccctg < 2:6649072/93‑3 (MQ=255)
aTTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccctg > 1:449603/1‑91 (MQ=255)
ttGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGcccctgc > 1:1585114/1‑90 (MQ=255)
gTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCctgctg > 1:7751551/1‑93 (MQ=255)
ttctAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGtttt < 1:1924923/93‑1 (MQ=255)
ttctAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGtttt < 1:7295203/93‑1 (MQ=255)
tctAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACAAC‑CCCCCGCCTGtttgc > 1:6710361/1‑91 (MQ=255)
tAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCt < 2:7740409/93‑1 (MQ=255)
aaCCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTa > 1:5384892/1‑93 (MQ=255)
aaCCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTa > 2:80908/1‑93 (MQ=255)
aaCCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTa < 2:5822133/93‑1 (MQ=255)
aCCTCTCTCGATAGCGATATGAACCTCATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAg < 2:3853680/93‑1 (MQ=255)
ccTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAgc < 1:6458719/93‑1 (MQ=255)
tctctcGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAgcgc > 2:6538941/1‑93 (MQ=255)
tcGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGttt > 2:1913346/1‑93 (MQ=255)
cGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTa < 2:7127509/93‑1 (MQ=255)
gATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAc > 1:2082859/1‑93 (MQ=255)
gATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAc < 1:3275080/93‑1 (MQ=255)
gATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAc > 2:4944898/1‑93 (MQ=255)
aTAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACg > 1:10018326/1‑93 (MQ=255)
aTAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACg < 2:2968872/93‑1 (MQ=255)
tAGCGATATGAACCGCATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGt < 1:2611491/93‑1 (MQ=255)
tAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGt > 1:3004137/1‑93 (MQ=255)
tAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGt < 2:3288943/93‑1 (MQ=255)
tAGCGATATGAACCACATCCTGGCACTGGAAATGGG‑GCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGtt > 1:8081182/1‑93 (MQ=255)
aGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGtt < 1:2403139/93‑1 (MQ=255)
aGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGtt < 2:8524350/93‑1 (MQ=255)
gCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGttt < 1:9839919/93‑1 (MQ=255)
gATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGc > 2:2306981/1‑93 (MQ=255)
gATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGc < 1:505956/93‑1 (MQ=255)
gATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGc > 2:9668765/1‑93 (MQ=255)
atatGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCa > 2:9911660/1‑93 (MQ=255)
atGAACCACATCCTGGCACTGGAAATGGTTGCCTGCGACGATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCAtt < 2:1554782/93‑1 (MQ=255)
atGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCAtt < 1:392047/93‑1 (MQ=255)
aaCCACCTCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGc < 2:3492150/93‑1 (MQ=255)
aaCCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGc < 2:720669/93‑1 (MQ=255)
aaCCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGc < 2:5177951/93‑1 (MQ=255)
aCCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCg > 2:5910965/1‑93 (MQ=255)
aCCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCg > 1:6318059/1‑93 (MQ=255)
ccACATCCGTGCACTGGAAATGGGTGCCTGCGGCTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGt < 1:3138612/93‑1 (MQ=255)
cacaTCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTc > 2:1009144/1‑93 (MQ=255)
cacaTCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTc > 2:9324095/1‑93 (MQ=255)
acaTCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCa > 1:9592224/1‑93 (MQ=255)
acaTCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCa > 1:7599283/1‑93 (MQ=255)
aTCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGa > 1:1448893/1‑93 (MQ=255)
aTCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGa > 1:1860238/1‑93 (MQ=255)
tCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGaa < 2:3067625/93‑1 (MQ=255)
tCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGaa > 1:5171075/1‑93 (MQ=255)
tCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGaa > 1:2310395/1‑93 (MQ=255)
ccTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAAt > 1:2838373/1‑93 (MQ=255)
ccTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAAt < 1:5793987/93‑1 (MQ=255)
cTGGCACTGGAAATGGGTGCTTGAGACTATATTATCAACACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATg < 2:5430657/93‑1 (MQ=255)
cTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGGATg > 2:3991920/1‑93 (MQ=255)
tGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGa < 1:4185277/93‑1 (MQ=255)
gCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGc < 2:1200235/93‑1 (MQ=255)
cACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCa < 2:4237486/93‑1 (MQ=255)
cACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCa < 1:5297242/93‑1 (MQ=255)
aCTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCaa > 2:3224996/1‑93 (MQ=255)
aCTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCaa > 1:1689847/1‑93 (MQ=255)
tGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGc > 2:4374208/1‑93 (MQ=255)
tGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGc > 1:8701415/1‑93 (MQ=255)
tGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGc > 1:5439185/1‑93 (MQ=255)
aaaTGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCcac < 2:1345852/93‑1 (MQ=255)
aaTGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCcaca > 1:2977142/1‑93 (MQ=255)
aaTGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCcaca < 2:216120/93‑1 (MQ=255)
aTGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCacac > 2:7305230/1‑93 (MQ=255)
tGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACt > 1:1299676/1‑93 (MQ=255)
gggTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTg > 1:2774929/1‑93 (MQ=255)
ggTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGa > 1:6128827/1‑93 (MQ=255)
cTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCaaa > 1:1181723/1‑93 (MQ=255)
cTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCaaa < 2:8686405/93‑1 (MQ=255)
cTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCaaa < 1:9322443/93‑1 (MQ=255)
tGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAg < 2:6389839/93‑1 (MQ=255)
aCTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCt > 2:4327501/1‑93 (MQ=255)
aCTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCt > 2:9114227/1‑93 (MQ=255)
tataTTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTc > 2:2493526/1‑93 (MQ=255)
tataTTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTc > 1:3559808/1‑93 (MQ=255)
atatTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCa < 1:7854494/93‑1 (MQ=255)
atatTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCa > 2:5197360/1‑93 (MQ=255)
atatTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCa > 1:705813/1‑93 (MQ=255)
tatTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAg > 1:7995108/1‑93 (MQ=255)
ttCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGTGTTAGAATGAGCAAGCCACACTGACCAAAGTTCTTCAGGa > 2:9221696/1‑93 (MQ=255)
tctcAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGaa > 2:8356866/1‑93 (MQ=255)
tctcAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGaa < 1:8241798/93‑1 (MQ=255)
tctcAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGaa > 2:2594999/1‑93 (MQ=255)
ctcAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGaaa < 2:5097539/93‑1 (MQ=255)
aaaaCGACG‑CCCCGGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGt < 2:3675839/93‑1 (MQ=255)
aaaCGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGtc > 2:9071695/1‑93 (MQ=255)
acgacg‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGtctc < 1:8494628/93‑1 (MQ=255)
acgacg‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGtctc < 1:6553519/93‑1 (MQ=255)
cgacg‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTctct < 2:7613446/93‑1 (MQ=255)
|
GACCGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCT > NC_000913/1680400‑1680580
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTA > NC_000913/1680403‑1680589
|
CGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCT > SRR4302540.4217605/1‑94 (MQ=60)
CGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCT < SRR4302540.6546381/94‑1 (MQ=60)
CGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCT < SRR4302540.7223325/94‑1 (MQ=60)
CGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCT > SRR4302540.9167560/1‑94 (MQ=60)
CGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCT > SRR4302540.5386462/1‑94 (MQ=60)
CGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCT > SRR4302540.9738635/1‑94 (MQ=60)
ATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGC > SRR4302540.1602427/1‑94 (MQ=60)
TGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTG > SRR4302540.7842079/1‑94 (MQ=60)
TCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTT < SRR4302540.1662717/94‑1 (MQ=60)
CTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTT > SRR4302540.3585428/1‑94 (MQ=60)
TTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTG > SRR4302540.5294569/1‑94 (MQ=60)
TTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTG > SRR4302540.8646191/1‑94 (MQ=60)
TTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTG < SRR4302540.1945905/94‑1 (MQ=60)
TTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTG < SRR4302540.7376620/94‑1 (MQ=60)
TTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTG < SRR4302540.9583658/94‑1 (MQ=60)
TCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGC < SRR4302540.1995096/94‑1 (MQ=60)
CTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCT < SRR4302540.5181292/94‑1 (MQ=60)
TAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTA > SRR4302540.5444121/1‑94 (MQ=60)
TAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTA > SRR4302540.2894390/1‑94 (MQ=60)
AACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAG > SRR4302540.1631694/1‑94 (MQ=60)
AACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAG > SRR4302540.6060980/1‑94 (MQ=60)
ACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGC < SRR4302540.4001710/94‑1 (MQ=60)
CCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCG < SRR4302540.6530607/94‑1 (MQ=60)
CCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCG < SRR4302540.6025853/94‑1 (MQ=60)
CTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGC > SRR4302540.5140303/1‑94 (MQ=60)
TCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTT > SRR4302540.7875964/1‑94 (MQ=60)
CTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTT < SRR4302540.1566553/94‑1 (MQ=60)
CTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTT < SRR4302540.2894052/94‑1 (MQ=60)
CTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTT > SRR4302540.8454933/1‑94 (MQ=60)
TCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTA < SRR4302540.666568/94‑1 (MQ=60)
CGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAC < SRR4302540.2415023/94‑1 (MQ=60)
CGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAC < SRR4302540.2630631/94‑1 (MQ=60)
CGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAC > SRR4302540.2105232/1‑94 (MQ=60)
CGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAC > SRR4302540.2861367/1‑94 (MQ=60)
CGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAC < SRR4302540.7150/94‑1 (MQ=60)
CGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAC < SRR4302540.8156686/94‑1 (MQ=60)
CGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTAC < SRR4302540.1073754/94‑1 (MQ=60)
GATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACG < SRR4302540.3310845/94‑1 (MQ=60)
GATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACG > SRR4302540.10036349/1‑94 (MQ=60)
GATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACG > SRR4302540.10134934/1‑94 (MQ=60)
ATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGT > SRR4302540.3730504/1‑94 (MQ=60)
ATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGT > SRR4302540.6899779/1‑94 (MQ=60)
ATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGT > SRR4302540.3037217/1‑94 (MQ=60)
ATAGCGATATGAACCACATCCTGGCACTGGAAATGGG‑GCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTT > SRR4302540.8174978/1‑94 (MQ=60)
TAGCGATATGAACCGCATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTT < SRR4302540.2639684/94‑1 (MQ=60)
TAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTT < SRR4302540.5292833/94‑1 (MQ=60)
TAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTT > SRR4302540.7708782/1‑94 (MQ=60)
TAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTT > SRR4302540.3156109/1‑94 (MQ=60)
AGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTT < SRR4302540.4969870/94‑1 (MQ=60)
AGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTT < SRR4302540.2429056/94‑1 (MQ=60)
AGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTT > SRR4302540.3751136/1‑94 (MQ=60)
GCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTG < SRR4302540.9954964/94‑1 (MQ=60)
CGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGC > SRR4302540.4326148/1‑94 (MQ=60)
CGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGC > SRR4302540.1356098/1‑94 (MQ=60)
CGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGC > SRR4302540.8050557/1‑94 (MQ=60)
GATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCA > SRR4302540.6527493/1‑94 (MQ=60)
GATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCA < SRR4302540.511373/94‑1 (MQ=60)
GATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCA < SRR4302540.146457/94‑1 (MQ=60)
ATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCAT > SRR4302540.3169081/1‑94 (MQ=60)
ATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTT < SRR4302540.396107/94‑1 (MQ=60)
GAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGC < SRR4302540.9281152/94‑1 (MQ=60)
AACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCT > SRR4302540.7589029/1‑94 (MQ=60)
AACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCG > SRR4302540.6388415/1‑94 (MQ=60)
CCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTC > SRR4302540.7932226/1‑94 (MQ=60)
CCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTC < SRR4302540.946247/94‑1 (MQ=60)
CCACATCCGTGCACTGGAAATGGGTGCCTGCGGCTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTC < SRR4302540.3172842/94‑1 (MQ=60)
CACATCCTGGCACTGGAAATGGGTGCCTGCGACTATCTTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATgtgctccg > SRR4302540.7684670/1‑86 (MQ=60)
CACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCA < SRR4302540.827712/94‑1 (MQ=60)
CACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCA < SRR4302540.6532481/94‑1 (MQ=60)
CACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCA > SRR4302540.7684669/1‑94 (MQ=60)
CACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCA > SRR4302540.9705428/1‑94 (MQ=60)
ACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAG > SRR4302540.275602/1‑94 (MQ=60)
ACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAG < SRR4302540.6864155/94‑1 (MQ=60)
ACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAG < SRR4302540.1444306/94‑1 (MQ=60)
CATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGA > SRR4302540.1464646/1‑94 (MQ=60)
CATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGA > SRR4302540.1880639/1‑94 (MQ=60)
ATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAA > SRR4302540.6379322/1‑94 (MQ=60)
ATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAA > SRR4302540.4510401/1‑94 (MQ=60)
ATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAA > SRR4302540.5227343/1‑94 (MQ=60)
ATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAA > SRR4302540.2335266/1‑94 (MQ=60)
TCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAAT > SRR4302540.2869075/1‑94 (MQ=60)
TCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAAT < SRR4302540.8773496/94‑1 (MQ=60)
TCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAAT < SRR4302540.7969779/94‑1 (MQ=60)
CCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATG < SRR4302540.5858009/94‑1 (MQ=60)
TGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAG < SRR4302540.9011198/94‑1 (MQ=60)
TGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAG > SRR4302540.6737625/1‑94 (MQ=60)
TGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAG < SRR4302540.4230762/94‑1 (MQ=60)
GCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCA < SRR4302540.6523929/94‑1 (MQ=60)
GCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCA > SRR4302540.2082911/1‑94 (MQ=60)
CACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAA > SRR4302540.1708169/1‑94 (MQ=60)
CACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAA < SRR4302540.5355191/94‑1 (MQ=60)
ACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAG < SRR4302540.5667531/94‑1 (MQ=60)
ACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAG > SRR4302540.1925522/1‑94 (MQ=60)
ACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAG > SRR4302540.3010915/1‑94 (MQ=60)
CTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCCTCTGCGTCAGAATCAGCACGC > SRR4302540.5499028/1‑94 (MQ=60)
CTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGC > SRR4302540.5499027/1‑94 (MQ=60)
CTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGC > SRR4302540.8802417/1‑94 (MQ=60)
TGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCC > SRR4302540.1720540/1‑94 (MQ=60)
GGAAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGCCAGCATGAGCAACCCA > SRR4302540.549351/1‑94 (MQ=60)
AAATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACA > SRR4302540.3010039/1‑94 (MQ=60)
AATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACAC < SRR4302540.2300288/94‑1 (MQ=60)
ATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACT > SRR4302540.1870663/1‑94 (MQ=60)
ATGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACT > SRR4302540.1313147/1‑94 (MQ=60)
TGGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTG > SRR4302540.2804918/1‑94 (MQ=60)
GGGTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGA > SRR4302540.6197092/1‑94 (MQ=60)
GGTGCCTGCCACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGAC < SRR4302540.240929/94‑1 (MQ=60)
GTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACC > SRR4302540.3344335/1‑94 (MQ=60)
GTGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACC < SRR4302540.2291354/94‑1 (MQ=60)
GTGCCTGCAGCTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACC < SRR4302540.1291167/94‑1 (MQ=60)
TGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCA < SRR4302540.5425620/94‑1 (MQ=60)
TGCCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCA < SRR4302540.8435049/94‑1 (MQ=60)
CCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAA < SRR4302540.7667388/94‑1 (MQ=60)
CCTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAA > SRR4302540.1193923/1‑94 (MQ=60)
CTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAG > SRR4302540.4573893/1‑94 (MQ=60)
CTGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAG < SRR4302540.9433661/94‑1 (MQ=60)
TGCGACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGG < SRR4302540.7310797/94‑1 (MQ=60)
GACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCT > SRR4302540.1226228/1‑94 (MQ=60)
ACTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTT > SRR4302540.9004787/1‑94 (MQ=60)
CTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGTATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTC > SRR4302540.6371007/1‑94 (MQ=60)
CTATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTC > SRR4302540.3598695/1‑94 (MQ=60)
TATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCA > SRR4302540.713394/1‑94 (MQ=60)
ATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAG < SRR4302540.7946271/94‑1 (MQ=60)
ATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAG < SRR4302540.3031000/94‑1 (MQ=60)
ATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAG > SRR4302540.8088177/1‑94 (MQ=60)
ATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAG > SRR4302540.8104664/1‑94 (MQ=60)
ATATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAG < SRR4302540.1934240/94‑1 (MQ=60)
ATTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGA > SRR4302540.2685072/1‑94 (MQ=60)
TTCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAA > SRR4302540.10060409/1‑94 (MQ=60)
TCTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAA < SRR4302540.8337586/94‑1 (MQ=60)
CTCAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAAC < SRR4302540.9375307/94‑1 (MQ=60)
CAAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGT > SRR4302540.9729731/1‑94 (MQ=60)
AAAACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTC < SRR4302540.2465293/94‑1 (MQ=60)
ACGACG‑CCCCTTCTTTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCT < SRR4302540.81755/94‑1 (MQ=60)
ACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCT < SRR4302540.8593335/94‑1 (MQ=60)
ACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCT < SRR4302540.6626198/94‑1 (MQ=60)
ACGACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCT < SRR4302540.282049/94‑1 (MQ=60)
GACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGA > SRR4302540.2443140/1‑94 (MQ=60)
GACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGA > SRR4302540.1232274/1‑94 (MQ=60)
ACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGAC < SRR4302540.1860802/94‑1 (MQ=60)
ACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGAC > SRR4302540.244526/1‑94 (MQ=60)
ACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGAC < SRR4302540.6287307/94‑1 (MQ=60)
ACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGAC < SRR4302540.6666327/94‑1 (MQ=60)
ACG‑CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGAC < SRR4302540.6666328/94‑1 (MQ=60)
gcgCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGAC < SRR4302540.2221411/91‑1 (MQ=60)
ccgCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGAC < SRR4302540.3605047/91‑1 (MQ=60)
cgCCCCTGTTGTTTTGCTAGCGGGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACT < SRR4302540.9794141/92‑1 (MQ=60)
cgCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACT > SRR4302540.6781884/3‑94 (MQ=60)
cgCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACT > SRR4302540.5044816/3‑94 (MQ=60)
GCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTC > SRR4302540.7827684/1‑94 (MQ=60)
CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCC > SRR4302540.9405101/1‑94 (MQ=60)
CCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCC > SRR4302540.3799242/1‑94 (MQ=60)
CCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCC > SRR4302540.1171742/1‑94 (MQ=60)
CCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCC > SRR4302540.3027332/1‑94 (MQ=60)
CTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTA > SRR4302540.3872330/1‑94 (MQ=60)
CTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTA > SRR4302540.3872331/1‑94 (MQ=60)
CTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTA > SRR4302540.5089951/1‑94 (MQ=60)
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CGATTGTTCTTCTAACCTCTCTCGATAGCGATATGAACCACATCCTGGCACTGGAAATGGGTGCCTGCGACTATATTCTCAAAACGACGCCCCCTGCTGTTTTGCTAGCGCGTTTACGTTTGCATTTGCGTCAGAATGAGCAAGCCACACTGACCAAAGGTCTTCAGGAAACGTCTCTGACTCCCTA > NC_000913/1680403‑1680589
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
