Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,689,553 |
A→G |
intergenic (+169/+57) |
ydgA → / ← uidC |
hypothetical protein/membrane‑associated protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,689,553 | 0 | A | G | 99.6%
| 701.6
/ NA
| 223 | intergenic (+169/+57) | ydgA/uidC | hypothetical protein/membrane‑associated protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (99/123); total (99/124) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 246 total aligned reads displayed.
GCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCAT > NC_000913/1689463‑1689642
|
gCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGcg < 1:3733286/93‑1 (MQ=255)
cTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAgcgc > 2:6700017/1‑93 (MQ=255)
ttATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGcgcg > 1:1731962/1‑93 (MQ=255)
ttAGCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGcgcg > 2:8928425/1‑93 (MQ=255)
tATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAgcgcgc < 1:4065734/93‑1 (MQ=255)
aTCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCa < 1:1380029/93‑1 (MQ=255)
tCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCAc < 2:9503858/93‑1 (MQ=255)
tCAGCCCTACCTTTTCCTGCAACACTTTGAATTTAGGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCGGCATCCGGCATAAAAAACGCGCAc < 2:4562823/93‑1 (MQ=25)
cAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACt > 1:715441/1‑93 (MQ=255)
cAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACt > 1:8111777/1‑93 (MQ=255)
aGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACtt < 1:7930552/93‑1 (MQ=255)
aGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACtt > 2:7101286/1‑93 (MQ=255)
ggCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACttt > 2:3609064/1‑93 (MQ=255)
gCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTg > 1:5937681/1‑93 (MQ=255)
ccTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGt > 1:8999804/1‑93 (MQ=255)
ccTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGt < 2:2902522/93‑1 (MQ=255)
ccTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGt < 1:4226115/93‑1 (MQ=255)
tACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTca < 2:2814007/93‑1 (MQ=255)
tACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTca > 1:1208081/1‑93 (MQ=255)
tACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTca > 2:4623394/1‑93 (MQ=255)
tACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCAATTTGTca > 2:808796/1‑93 (MQ=255)
tACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGATGGATAAGGCGTTTACGCCGACTCCGGCATACAAAAAGCGCACTTTGtta > 1:7027261/1‑91 (MQ=25)
ctacTTTTTCTGCCACCCCTTTGATTTATGAGTTTTTGGAGGCTGGGAAAAGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTca < 1:4350147/90‑1 (MQ=12)
aCCTTTTCCTGCAACACTTTGCATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTcaa > 1:1979737/1‑93 (MQ=255)
ccTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTcaac < 2:975739/93‑1 (MQ=255)
cTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTcaaca > 1:915669/1‑93 (MQ=255)
ttttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTcaacaa < 2:1718417/93‑1 (MQ=255)
ttttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTcaacaa > 1:5842465/1‑93 (MQ=255)
ttttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTcaacaa < 1:164525/93‑1 (MQ=255)
ttttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTcaacaa < 2:5972495/93‑1 (MQ=255)
ttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATc < 2:6543012/93‑1 (MQ=255)
ttCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATc < 2:3785417/93‑1 (MQ=255)
ttCCTGCAACACTTTGAATTTATGAGTGTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCTGCATAAAAAGCGCGCACTTTGTCAACAATc < 2:8650444/93‑1 (MQ=255)
tGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGaa > 2:2264694/1‑93 (MQ=255)
gCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGaaa < 2:1942812/93‑1 (MQ=255)
gCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGaaa < 2:5837675/93‑1 (MQ=255)
gCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGaaa < 1:4478099/93‑1 (MQ=255)
gCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGaaa > 2:8303311/1‑93 (MQ=255)
cAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAAc < 1:3864828/93‑1 (MQ=255)
cAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGAATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAAc < 1:4604274/93‑1 (MQ=255)
acTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCg < 1:6415480/93‑1 (MQ=255)
acTTCGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCg > 2:1898095/1‑93 (MQ=255)
tttGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCCCGCACTTTGTCAACAATCCGAAACGCCGga < 2:122972/93‑1 (MQ=255)
tGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGgaga < 2:7358021/93‑1 (MQ=255)
tGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGgaga < 2:8245408/93‑1 (MQ=255)
tGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGgaga > 1:9171613/1‑93 (MQ=255)
gAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGAt < 2:4121415/93‑1 (MQ=255)
aaTTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGAtt < 2:5685192/93‑1 (MQ=255)
ttATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGAttttt > 1:2159653/1‑93 (MQ=255)
ttATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGAttttt < 2:3525458/93‑1 (MQ=255)
aTGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTtct > 1:9995756/1‑93 (MQ=255)
aTGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTtct < 1:7599630/93‑1 (MQ=255)
aGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTtctctc > 1:7513759/1‑93 (MQ=255)
aGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTtctctc < 1:3461024/93‑1 (MQ=255)
aGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTtctctc < 2:9450900/93‑1 (MQ=255)
gTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTcc < 1:6196673/93‑1 (MQ=255)
gTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTcc > 2:936639/1‑93 (MQ=255)
tttttGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCg < 2:3209732/93‑1 (MQ=255)
tttGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCTGGAGATTTTTCTCTCCGGc > 2:7756311/1‑93 (MQ=255)
tttGTAGCCGGGAGAGGGCTTTCACGCCGCATCCGGAAAAAAAGGCGCGCTTTTTGCCAACAATCTAAACCGCCGGATATTTTTCTCTCCGGc < 2:5443921/93‑1 (MQ=12)
ttGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCg < 1:2336276/93‑1 (MQ=255)
gTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGtt < 1:2665459/93‑1 (MQ=255)
gCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAttt > 2:8780299/1‑93 (MQ=255)
cTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAtttt < 1:1017004/93‑1 (MQ=255)
cTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAtttt < 1:8771808/93‑1 (MQ=255)
ggATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAtttttt > 2:634888/1‑93 (MQ=255)
ggATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAtttttt > 2:6192561/1‑93 (MQ=255)
gATAGGGCGTTTACGCGCCATCCGGCATAAAAAGCCCCCACTTGGCCAACAATCGGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTa < 2:2012762/93‑1 (MQ=37)
tAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACt > 1:5939377/1‑93 (MQ=255)
tAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACt < 1:6944610/93‑1 (MQ=255)
aGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTc < 1:1003423/93‑1 (MQ=255)
ggCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCa > 1:8364059/1‑93 (MQ=255)
gTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCa < 2:7796049/93‑1 (MQ=255)
gTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCa > 1:6770320/1‑93 (MQ=255)
tttACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCAt < 1:8407618/93‑1 (MQ=255)
tACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATaa < 2:9806498/93‑1 (MQ=255)
aCGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATaaa < 2:4744376/93‑1 (MQ=255)
aCGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATaaa < 1:2987780/93‑1 (MQ=255)
cgccgcATCCGGCATAAAAAGCGCGCACTTTGTCAACGATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAg > 1:5267505/1‑93 (MQ=255)
cgccgcATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAg < 1:6879771/93‑1 (MQ=255)
gccgcATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCCTACAGt > 1:6521698/1‑93 (MQ=255)
gcATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGTAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCATCATAAAGTCAt > 1:5707494/1‑93 (MQ=255)
gcATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCAt < 2:7220056/93‑1 (MQ=255)
gcATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCAt > 1:3161869/1‑93 (MQ=255)
cATCTGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATa < 1:1080361/93‑1 (MQ=255)
cATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATa > 1:5044810/1‑93 (MQ=255)
aTCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATAc > 2:9189434/1‑93 (MQ=255)
aTCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATAc < 1:2016514/93‑1 (MQ=255)
tCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACt > 2:1840646/1‑93 (MQ=255)
tCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACt > 1:4727463/1‑93 (MQ=255)
cGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGa < 1:7267008/93‑1 (MQ=255)
cGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGa < 2:2144147/93‑1 (MQ=255)
cATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATa < 1:5163151/93‑1 (MQ=255)
cATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATa < 1:9858906/93‑1 (MQ=255)
tAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACt > 2:4416292/1‑93 (MQ=255)
tAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACt > 2:953114/1‑93 (MQ=255)
tAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACt > 2:162161/1‑93 (MQ=255)
aaaaagCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTc > 1:2745877/1‑93 (MQ=255)
aaaagCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCa < 2:4985398/93‑1 (MQ=255)
aaagCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCAt > 2:6800401/1‑93 (MQ=255)
|
GCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCAT > NC_000913/1689463‑1689642
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTT > NC_000913/1689460‑1689645
|
TACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAG > SRR4302540.9154220/1‑94 (MQ=60)
TACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAG > SRR4302540.4766208/1‑94 (MQ=60)
TACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAG > SRR4302540.10147053/1‑94 (MQ=60)
ACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGC < SRR4302540.2608050/94‑1 (MQ=60)
ACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGC > SRR4302540.5959338/1‑94 (MQ=60)
GCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGC < SRR4302540.3774019/94‑1 (MQ=60)
CTTATCAGGCTTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCG < SRR4302540.4752597/94‑1 (MQ=60)
CTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCG > SRR4302540.10102660/1‑94 (MQ=60)
CTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCG > SRR4302540.1750654/1‑94 (MQ=60)
TATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCA < SRR4302540.1179739/94‑1 (MQ=60)
TATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCA < SRR4302540.4109563/94‑1 (MQ=60)
ATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCAC < SRR4302540.1394744/94‑1 (MQ=60)
TCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACT > SRR4302540.8205926/1‑94 (MQ=60)
TCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACT > SRR4302540.723121/1‑94 (MQ=60)
AGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTT < SRR4302540.8022989/94‑1 (MQ=60)
AGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTT < SRR4302540.4168396/94‑1 (MQ=60)
GGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTG < SRR4302540.7511051/94‑1 (MQ=60)
GGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTG < SRR4302540.8540864/94‑1 (MQ=60)
GGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTG > SRR4302540.6003319/1‑94 (MQ=60)
GGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTG > SRR4302540.1017612/1‑94 (MQ=60)
GCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGT > SRR4302540.1606038/1‑94 (MQ=60)
GCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGT > SRR4302540.9107780/1‑94 (MQ=60)
CCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTC < SRR4302540.4272124/94‑1 (MQ=60)
CTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCA > SRR4302540.7041894/1‑94 (MQ=60)
CTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCA > SRR4302540.1220477/1‑94 (MQ=60)
CTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGATGGATAAGGCGTTTACGCCGACTCCGGCATACAAAAAGCGCACTTTGTTA > SRR4302540.7105336/1‑94 (MQ=60)
ctactttttctgccacccctttgATTTATGAGTTTTTGGAGGCTGGGAAAAGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAA < SRR4302540.4397469/71‑1 (MQ=31)
TACCTTTTCCTGCAACACTTTGCATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAA > SRR4302540.2001216/1‑94 (MQ=60)
TACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGAGTTTACGCCGCATCCGGCATAAGAAGCGCGCACTTTGTCAA > SRR4302540.1344023/1‑94 (MQ=60)
CCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACA > SRR4302540.925346/1‑94 (MQ=60)
CTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAA > SRR4302540.5907076/1‑94 (MQ=60)
TTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAAT < SRR4302540.5001889/94‑1 (MQ=60)
TTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAAT < SRR4302540.166172/94‑1 (MQ=60)
TTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATC > SRR4302540.4622702/1‑94 (MQ=60)
TCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTG > SRR4302540.239861/1‑94 (MQ=60)
CTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAA < SRR4302540.9127234/94‑1 (MQ=60)
ttAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAAC < SRR4302540.6510330/92‑1 (MQ=60)
GCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAAC < SRR4302540.5987044/94‑1 (MQ=60)
GCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAAC < SRR4302540.6528442/94‑1 (MQ=60)
GCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAAC < SRR4302540.2063875/94‑1 (MQ=60)
GCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAAC < SRR4302540.8064058/94‑1 (MQ=60)
GCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAAC < SRR4302540.4526670/94‑1 (MQ=60)
CAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACG < SRR4302540.7171511/94‑1 (MQ=60)
CAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACG < SRR4302540.3906839/94‑1 (MQ=60)
CAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGAATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACG < SRR4302540.4653734/94‑1 (MQ=60)
ACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGG > SRR4302540.620518/1‑94 (MQ=60)
ACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGG < SRR4302540.6417518/94‑1 (MQ=60)
ACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGG < SRR4302540.6486872/94‑1 (MQ=60)
ACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGG > SRR4302540.1961510/1‑94 (MQ=60)
ACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGG > SRR4302540.7738867/1‑94 (MQ=60)
CTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGA > SRR4302540.6004163/1‑94 (MQ=60)
TTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGA > SRR4302540.9281634/1‑94 (MQ=60)
TTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGA > SRR4302540.4398876/1‑94 (MQ=60)
AATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTT > SRR4302540.4289377/1‑94 (MQ=60)
ATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTT < SRR4302540.1057235/94‑1 (MQ=60)
TTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTT > SRR4302540.2182907/1‑94 (MQ=60)
TTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTAAACAATCTGAAACGCCGGAGATTTTT < SRR4302540.3665412/94‑1 (MQ=60)
TATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCT > SRR4302540.10112228/1‑94 (MQ=60)
ATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTC < SRR4302540.7685022/94‑1 (MQ=60)
TGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCT < SRR4302540.8689180/94‑1 (MQ=60)
GAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTC > SRR4302540.7597760/1‑94 (MQ=60)
AGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCC < SRR4302540.3498694/94‑1 (MQ=60)
GTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCG < SRR4302540.7561249/94‑1 (MQ=60)
GTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCG < SRR4302540.6265661/94‑1 (MQ=60)
GTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCG < SRR4302540.8382758/94‑1 (MQ=60)
TTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGT < SRR4302540.2361453/94‑1 (MQ=60)
TGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTT > SRR4302540.5316183/1‑94 (MQ=60)
GTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTA < SRR4302540.2694357/94‑1 (MQ=60)
GTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTA < SRR4302540.2334010/94‑1 (MQ=60)
TAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTAT < SRR4302540.3781366/94‑1 (MQ=60)
GGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTT > SRR4302540.8896164/1‑94 (MQ=60)
CTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTT < SRR4302540.9279886/94‑1 (MQ=60)
CTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTT < SRR4302540.8873448/94‑1 (MQ=60)
CTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTT < SRR4302540.1027310/94‑1 (MQ=60)
CTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTT < SRR4302540.1103589/94‑1 (MQ=60)
TGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTT > SRR4302540.5947553/1‑94 (MQ=60)
GGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTA < SRR4302540.404497/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTA < SRR4302540.7292301/94‑1 (MQ=60)
GGATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTA > SRR4302540.9109963/1‑94 (MQ=60)
GATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTAT > SRR4302540.3053547/1‑94 (MQ=60)
GATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTAC < SRR4302540.760523/94‑1 (MQ=60)
ATAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACT > SRR4302540.6005033/1‑94 (MQ=60)
TAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTT < SRR4302540.7022062/94‑1 (MQ=60)
TAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTT < SRR4302540.7021905/94‑1 (MQ=60)
TAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTT < SRR4302540.7021904/94‑1 (MQ=60)
TAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTT < SRR4302540.5494300/94‑1 (MQ=60)
TAAGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTT < SRR4302540.5494299/94‑1 (MQ=60)
AGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCA < SRR4302540.1013608/94‑1 (MQ=60)
AGGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCA > SRR4302540.8461118/1‑94 (MQ=60)
GGCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAG < SRR4302540.3032966/94‑1 (MQ=60)
GCGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGC < SRR4302540.271416/94‑1 (MQ=60)
CGTTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCA > SRR4302540.6845143/1‑94 (MQ=60)
TTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATA < SRR4302540.1585286/94‑1 (MQ=60)
TTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATA < SRR4302540.8505203/94‑1 (MQ=60)
TTTACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATA < SRR4302540.8505204/94‑1 (MQ=60)
TACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAA > SRR4302540.963273/1‑94 (MQ=60)
TACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTAAGCATAAA > SRR4302540.2121227/1‑94 (MQ=60)
ACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACGATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAG > SRR4302540.5324994/1‑94 (MQ=60)
ACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAG < SRR4302540.1691974/94‑1 (MQ=60)
ACGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAG < SRR4302540.3020734/94‑1 (MQ=60)
CGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCCTACAGT > SRR4302540.6594131/1‑94 (MQ=60)
CGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGT > SRR4302540.3457619/1‑94 (MQ=60)
CGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGT < SRR4302540.7801604/94‑1 (MQ=60)
CGCCGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGT < SRR4302540.6956030/94‑1 (MQ=60)
CGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGTAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCATCATAAAGTCAT > SRR4302540.5770329/1‑94 (MQ=60)
CGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCAT > SRR4302540.5770330/1‑94 (MQ=60)
CGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCAT > SRR4302540.3196265/1‑94 (MQ=60)
CGCATCCGGCATAAAAAGCGCGCACTTTGTCAACAACCTGAAACGCCGGAGATTTTTCTCGCCGGCGTTATTTTTTTCTTCAGCATAAAGTCAT < SRR4302540.2625268/94‑1 (MQ=60)
GCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATA > SRR4302540.625711/1‑94 (MQ=60)
GCATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATA > SRR4302540.5099373/1‑94 (MQ=60)
CATCTGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATAC < SRR4302540.1091416/94‑1 (MQ=60)
ATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACT < SRR4302540.2038313/94‑1 (MQ=60)
ATCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACT > SRR4302540.4777952/1‑94 (MQ=60)
TCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTG > SRR4302540.1998282/1‑94 (MQ=60)
TCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTG < SRR4302540.2014763/94‑1 (MQ=60)
TCCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTG < SRR4302540.8250174/94‑1 (MQ=60)
CCGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGA > SRR4302540.430553/1‑94 (MQ=60)
CGGCATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAA < SRR4302540.7348096/94‑1 (MQ=60)
CATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATAC < SRR4302540.9974105/94‑1 (MQ=60)
CATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATAC < SRR4302540.5219290/94‑1 (MQ=60)
CATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATAC < SRR4302540.5219289/94‑1 (MQ=60)
ATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACT > SRR4302540.6929716/1‑94 (MQ=60)
ATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACT > SRR4302540.6870220/1‑94 (MQ=60)
ATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACT > SRR4302540.4857886/1‑94 (MQ=60)
ATAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACT > SRR4302540.2929944/1‑94 (MQ=60)
TAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTC < SRR4302540.4578016/94‑1 (MQ=60)
TAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTC > SRR4302540.3551856/1‑94 (MQ=60)
TAAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTC > SRR4302540.2775534/1‑94 (MQ=60)
AAAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCA > SRR4302540.9847472/1‑94 (MQ=60)
AAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCAT < SRR4302540.6776459/94‑1 (MQ=60)
AAAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCAT < SRR4302540.4083869/94‑1 (MQ=60)
AAAGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATT > SRR4302540.760795/1‑94 (MQ=60)
AGCGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTT < SRR4302540.2881942/94‑1 (MQ=60)
|
TACGCTTATCAGGCCTACCTTTTCCTGCAACACTTTGAATTTATGAGTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGCGCACTTTGTCAACAATCTGAAACGCCGGAGATTTTTCTCTCCGGCGTTATTTTTTACTTCAGCATAAAGTCATACTGAATACTCATTTT > NC_000913/1689460‑1689645
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
